BAC Information

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BAC

Clone NameB6Ng01-328A15
Chromosome8 (Build37)
Map Location 96,272,832 - 96,421,908
singlet/doubletdoublet
Overlap geneGnao1
Upstream geneMmp2, Aytl1, Capns2, LOC100040752, Slc6a2, EG244595, LOC382044, Es1, LOC676523, Ces3, Es22, AU018778, Ces1, 2310039D24Rik, Ces7
Downstream geneAmfr, Nudt21, Ogfod1, Bbs2, Mt4, Mt3, Mt2, Mt1, Nup93, LOC100041555, Slc12a3, Herpud1, EG434339, AI451557, Cpne2, 2310065K24Rik, Rspry1, Arl2bp, Pllp, Ccl22, Cx3cl1, 1700121C10Rik, Ccl17, Ciapin1, LOC664947, Coq9, Polr2c, Dok4, LOC100040942
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-328A15.bB6Ng01-328A15.g
ACCGA115407GA115408
length1,1951,091
definitionB6Ng01-328A15.b B6Ng01-328A15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,272,832 - 96,274,023)(96,420,802 - 96,421,908)
sequence
gaattcattggccaaccagtctaagccaaactggtgtgtgccagatccaa
tgagagaccttgtgtctaaaaataaggtagagagggactgaggaagacat
cagtataaacctctggcctctacatctgtgtgcacatatgcttgtgtatc
tgcatatacctgaacatacccccccacacacacacacaaattgttgcttg
gggagtattaagttatttgtacttaaacacacaaattcaagatcactcaa
aattaaaaaacaatgacgattattttcatctatggtaattaataaagata
ataattacagaaaagtctggaaattgtaagtatggaagaaaacccaacat
gtgtctcaatgagaagaaataattcaatgagaagaaaagagcggccaacc
agaaggataacagtaagaaaaataacggatgagggctgggaagaattttc
caggctgaggagtaatgaaagaacagagctctcatatcaaatatttatgt
caacagcccagagacaaaaacaaaattaaatccacatctaagaacatcat
ggtgtaaattcagattcatagagaattataggtggaaccaagtcactgtt
ctcccaactgcagtagatcaagaaggggtgtatttcagcaggacaaaaag
gagagtcggcaggaaggactgggatatgagggacgtgaaggattgcgtgc
taaccataactgacccgtgacttgcaaaacagctcgaaccaaagtcctac
ctaaccgtgaagtggcatgcaggggtagacattctgtgagaaaaataaat
aaaacatgaaacgctttgctatatttgaagagcagagagagtggggaact
aaataaaatgtgaagaaattaggggaaaatcacacacacgcacacacaca
cacacacatacacacacacacacaatctcaaatttaaaaattaccagtgt
ggaagtgagaggaagaataattaaaaatatgtgtgattctaaaataaagc
aaaaaagagcttggtaaatagaaagttacatgataggaataaattcaact
atttaatgaattgtagcctcctggaaatagattaaacctcagtcattgaa
gtggtactgtaactgtcgaataagtagcaaatgtcagcagtggctacttt
ctctcttcccaaagccgagagagttctggtaataaaaaagatgga
gaattctttctctgacagtgctggaaatctagttctcagtcaggtccctc
tacctttgaaggctacccagccttgaccacagggaacagaaaggccatgc
tcaagactttcccaagaagacggcccgttttctccaagcctgattaacag
ccttttaccaatgcaaccctttccataaggctacacataggcactgcaca
cactggccatttgagggtaaattccaggtactccccttctcttagaatgg
ggagaggaagactataattccattcaagagactttctgatgacctactat
gctcagggttcagtaaacatgggctcagcacagaacttggcagggagcag
gtgttctgcagatgatggctgttttcatgctcacagttctctggccagga
ggatgaaggagacgctgcagtcctcagcagccactgcacaccacttaccc
acactgccccacaggtactttctgatcatcagccttctccgaacaaggtt
ccctttgtgcctagtcctgcacagagaacgctgactggaacaagcctcaa
gaggcggaggtacccttgctccccattctgccttccatgttccctcggtc
tgcctccccctggagaagaacctgtgatagatacattgccagcttcctgt
cctgcctctggggagcagcagatggatgggctcggccaggaccctgctgc
ccaccccaggctggcatagacactgtgccagccacccactaccccaggcc
ctggagttgccatcctgagctgaggtgactgccctgtggaatgaggattt
gtgcacaacattctaaattttacatgcaaagctatctgacacataatttg
tcagaccctgagaaggcacaatagctttcgtctgtgaggcagggaaatgt
ttatctgtcaagtcaccagagactaagttccctactcagagactgcaatg
caagccagctgctcaagtcctcagctgtcaggctcagctgctctgaggct
tcagctgctcctgggtgggggtggggagcaagtcagcctttggagagact
ctcagtgtttcacgcgtctctcacacagtcctcatttacgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_96272832_96274023
seq2: B6Ng01-328A15.b_46_1240

seq1  GAATTCATTGGCCAACCAGTCTAAGCCAAACTGGTGTGTGCCAGATCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGGCCAACCAGTCTAAGCCAAACTGGTGTGTGCCAGATCCAA  50

seq1  TGAGAGACCTTGTGTCTAAAAATAAGGTAGAGAGGGACTGAGGAAGACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGACCTTGTGTCTAAAAATAAGGTAGAGAGGGACTGAGGAAGACAT  100

seq1  CAGTATAAACCTCTGGCCTCTACATCTGTGTGCACATATGCTTGTGTATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATAAACCTCTGGCCTCTACATCTGTGTGCACATATGCTTGTGTATC  150

seq1  TGCATATACCTGAACATACCCCCCCACACACACACACAAATTGTTGCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATATACCTGAACATACCCCCCCACACACACACACAAATTGTTGCTTG  200

seq1  GGGAGTATTAAGTTATTTGTACTTAAACACACAAATTCAAGATCACTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTATTAAGTTATTTGTACTTAAACACACAAATTCAAGATCACTCAA  250

seq1  AATTAAAAAACAATGACGATTATTTTCATCTATGGTAATTAATAAAGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAAAACAATGACGATTATTTTCATCTATGGTAATTAATAAAGATA  300

seq1  ATAATTACAGAAAAGTCTGGAAATTGTAAGTATGGAAGAAAACCCAACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTACAGAAAAGTCTGGAAATTGTAAGTATGGAAGAAAACCCAACAT  350

seq1  GTGTCTCAATGAGAAGAAATAATTCAATGAGAAGAAAAGAGCGGCCAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTCAATGAGAAGAAATAATTCAATGAGAAGAAAAGAGCGGCCAACC  400

seq1  AGAAGGATAACAGTAAGAAAAATAACGGATGAGGGCTGGGAAGAATTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGATAACAGTAAGAAAAATAACGGATGAGGGCTGGGAAGAATTTTC  450

seq1  CAGGCTGAGGAGTAATGAAAGAACAGAGCTCTCATATCAAATATTTATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGAGGAGTAATGAAAGAACAGAGCTCTCATATCAAATATTTATGT  500

seq1  CAACAGCCCAGAGACAAAAACAAAATTAAATCCACATCTAAGAACATCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGCCCAGAGACAAAAACAAAATTAAATCCACATCTAAGAACATCAT  550

seq1  GGTGTAAATTCAGATTCATAGAGAATTATAGGTGGAACCAAGTCACTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTAAATTCAGATTCATAGAGAATTATAGGTGGAACCAAGTCACTGTT  600

seq1  CTCCCAACTGCAGTAGATCAAGAAGGGGTGTATTTCAGCAGGACAAAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAACTGCAGTAGATCAAGAAGGGGTGTATTTCAGCAGGACAAAAAG  650

seq1  GAGAGTCGGCAGGAAGGACTGGGATATGAGGGACGTGAAGGATTGCGTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTCGGCAGGAAGGACTGGGATATGAGGGACGTGAAGGATTGCGTGC  700

seq1  TAACCATAACTGACCCGTGACTTGCAAAACAGCTCGAACCAAAGTCCTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCATAACTGACCCGTGACTTGCAAAACAGCTCGAACCAAAGTCCTAC  750

seq1  CTAACCGTGAAGTGGCATGCAGGGGTAGACATTCTGTGAGAAAAATAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCGTGAAGTGGCATGCAGGGGTAGACATTCTGTGAGAAAAATAAAT  800

seq1  AAAACATGAAACGCTTTGCTATATTTGAAGAGCAGAGAGAGTGGGGAACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATGAAACGCTTTGCTATATTTGAAGAGCAGAGAGAGTGGGGAACT  850

seq1  AAATAAAATGTGAAGAAATTAGGGGAAAATCACACACACGCACACACACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAATGTGAAGAAATTAGGGGAAAATCACACACACGCACACACACA  900

seq1  CACACACATACACACACACACACAATCTCAAATTTAAAAATTACCAGTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACATACACACACACACACAATCTCAAATTTAAAAATTACCAGTGT  950

seq1  GGAAGTGAGAGGAAGAATAATTAAAAATATGTGTGATTCTAAAATAAAGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTGAGAGGAAGAATAATTAAAAATATGTGTGATTCTAAAATAAAGC  1000

seq1  AAAAAAGAGCTTGGTAAATAGAAAGTTACATGATAGGAATAAATTCAACT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAGCTTGGTAAATAGAAAGTTACATGATAGGAATAAATTCAACT  1050

seq1  ATTTAATGAATTGTAGCCT-CTGGAAATAGATTAAA-CTCAGTTCATTGA  1098
      ||||||||||||||||||| |||||||||||||||| ||||| |||||||
seq2  ATTTAATGAATTGTAGCCTCCTGGAAATAGATTAAACCTCAG-TCATTGA  1099

seq1  AGTGGTTACTGTAACTGTCGATAAAGTAGCAAATGTCAGCAGTTGGCTAC  1148
      ||||| |||||||||||||||  ||||||||||||||||||| |||||||
seq2  AGTGG-TACTGTAACTGTCGAATAAGTAGCAAATGTCAGCAG-TGGCTAC  1147

seq1  T---TCTCTGCCCAAAGCAGAGAGAGTTCTGGTAAT-AAAAAGATGGA  1192
      |   ||||| |||||||| ||||||||||||||||| |||||||||||
seq2  TTTCTCTCTTCCCAAAGCCGAGAGAGTTCTGGTAATAAAAAAGATGGA  1195

seq1: chr8_96420802_96421908
seq2: B6Ng01-328A15.g_66_1156 (reverse)

seq1  CCGTAAAATGAGGACTGTGTGAGAGAGGTGTGAAAACAACCTGAGAATTC  50
      |||| ||||||||||||||||||||| | ||| |||||  ||||| | ||
seq2  CCGT-AAATGAGGACTGTGTGAGAGACGCGTG-AAACA--CTGAG-AGTC  45

seq1  TCTCCAAAAGCTGGACTTTGCTCCCCACCCCCACCCAGGGAGCAGCTGGA  100
      |||||||| ||| ||| |||||||||||||||||||| ||||||||| ||
seq2  TCTCCAAAGGCT-GAC-TTGCTCCCCACCCCCACCCA-GGAGCAGCT-GA  91

seq1  GGCCTCAGAGCAGCTGGAGGCCTTGGAACAGCTGGAGGACTTGGAGCAGC  150
       |||||||||||||||   ||||    |||||| |||||||| |||||||
seq2  AGCCTCAGAGCAGCTG--AGCCT---GACAGCT-GAGGACTT-GAGCAGC  134

seq1  TGGCTTGCATTGCAGTCTCTGAGTAGGGAACTTAGTCTCTGGTGACTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTGCATTGCAGTCTCTGAGTAGGGAACTTAGTCTCTGGTGACTTGA  184

seq1  CAGATAAACATTTCCCTGCCTCACAGACGAAAGCTATTGTGCCTTCTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAAACATTTCCCTGCCTCACAGACGAAAGCTATTGTGCCTTCTCAG  234

seq1  GGTCTGACAAATTATGTGTCAGATAGCTTTGCATGTAAAATTTAGAATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGACAAATTATGTGTCAGATAGCTTTGCATGTAAAATTTAGAATGT  284

seq1  TGTGCACAAATCCTCATTCCACAGGGCAGTCACCTCAGCTCAGGATGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCACAAATCCTCATTCCACAGGGCAGTCACCTCAGCTCAGGATGGCA  334

seq1  ACTCCAGGGCCTGGGGTAGTGGGTGGCTGGCACAGTGTCTATGCCAGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGGGCCTGGGGTAGTGGGTGGCTGGCACAGTGTCTATGCCAGCCT  384

seq1  GGGGTGGGCAGCAGGGTCCTGGCCGAGCCCATCCATCTGCTGCTCCCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGGGCAGCAGGGTCCTGGCCGAGCCCATCCATCTGCTGCTCCCCAG  434

seq1  AGGCAGGACAGGAAGCTGGCAATGTATCTATCACAGGTTCTTCTCCAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGACAGGAAGCTGGCAATGTATCTATCACAGGTTCTTCTCCAGGG  484

seq1  GGAGGCAGACCGAGGGAACATGGAAGGCAGAATGGGGAGCAAGGGTACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAGACCGAGGGAACATGGAAGGCAGAATGGGGAGCAAGGGTACCT  534

seq1  CCGCCTCTTGAGGCTTGTTCCAGTCAGCGTTCTCTGTGCAGGACTAGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCTCTTGAGGCTTGTTCCAGTCAGCGTTCTCTGTGCAGGACTAGGCA  584

seq1  CAAAGGGAACCTTGTTCGGAGAAGGCTGATGATCAGAAAGTACCTGTGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGGAACCTTGTTCGGAGAAGGCTGATGATCAGAAAGTACCTGTGGG  634

seq1  GCAGTGTGGGTAAGTGGTGTGCAGTGGCTGCTGAGGACTGCAGCGTCTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGTGGGTAAGTGGTGTGCAGTGGCTGCTGAGGACTGCAGCGTCTCC  684

seq1  TTCATCCTCCTGGCCAGAGAACTGTGAGCATGAAAACAGCCATCATCTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCCTCCTGGCCAGAGAACTGTGAGCATGAAAACAGCCATCATCTGC  734

seq1  AGAACACCTGCTCCCTGCCAAGTTCTGTGCTGAGCCCATGTTTACTGAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACACCTGCTCCCTGCCAAGTTCTGTGCTGAGCCCATGTTTACTGAAC  784

seq1  CCTGAGCATAGTAGGTCATCAGAAAGTCTCTTGAATGGAATTATAGTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGCATAGTAGGTCATCAGAAAGTCTCTTGAATGGAATTATAGTCTT  834

seq1  CCTCTCCCCATTCTAAGAGAAGGGGAGTACCTGGAATTTACCCTCAAATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCCCATTCTAAGAGAAGGGGAGTACCTGGAATTTACCCTCAAATG  884

seq1  GCCAGTGTGTGCAGTGCCTATGTGTAGCCTTATGGAAAGGGTTGCATTGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTGTGTGCAGTGCCTATGTGTAGCCTTATGGAAAGGGTTGCATTGG  934

seq1  TAAAAGGCTGTTAATCAGGCTTGGAGAAAACGGGCCGTCTTCTTGGGAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGCTGTTAATCAGGCTTGGAGAAAACGGGCCGTCTTCTTGGGAAA  984

seq1  GTCTTGAGCATGGCCTTTCTGTTCCCTGTGGTCAAGGCTGGGTAGCCTTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGAGCATGGCCTTTCTGTTCCCTGTGGTCAAGGCTGGGTAGCCTTC  1034

seq1  AAAGGTAGAGGGACCTGACTGAGAACTAGATTTCCAGCACTGTCAGAGAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTAGAGGGACCTGACTGAGAACTAGATTTCCAGCACTGTCAGAGAA  1084

seq1  AGAATTC  1107
      |||||||
seq2  AGAATTC  1091