BAC Information

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BAC

Clone NameB6Ng01-328J09
Chromosome8 (Build37)
Map Location 78,065,040 - 78,066,105
singlet/doubletsinglet
Overlap gene1700007B14Rik
Upstream geneIsx, Hmgb2l1, Tom1, LOC100039134, Hmox1, Mcm5, Rasd2, LOC675507, LOC384845, LOC666211, LOC100039229
Downstream geneLOC666036, LOC100039185, EG631594, LOC666226
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-328J09.bB6Ng01-328J09.g
ACCGA115809GA115810
length1,0641,230
definitionB6Ng01-328J09.b B6Ng01-328J09.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctccttcaaaagaaatatgaagtacagtgccttgcttaaagccag
atgtatcagaactagcttggaagacccacctggccaagtatagcttttga
tttttttacttatgtctccattgattgtgtatatggctaagcacgtacta
taatggcatagcaagcggtgactctgctggggagctagcacctgctaagc
aaatgtgaagaccatagttcaaatctgtcttggggattttgtgtgagtaa
ggacacgcagggcaagtgtttgctattccaaggctccaataaggatatga
gaagtggagacaagagaatcccagagacactctcaggctcaataccctag
acaacacagtgaacaaacaatagtgatcccatctcaaacaaggtaagatg
gtaagaaccaacacctagggttttcttttgatctctacatgcacaccata
gaatgtgcacatctggacacgtgcgcacacacatgcacacttttgctctg
atgtcttggttttgtattcttctcaattttccaagacctcctactcttta
gaaaccttattgctactaaaacctccatataacctgccatacattttgca
atgtgactaataacagtgatcatgacaggaaaacatatctatccaaatga
gaaatacatctaagtactttggttcaaaattatcaatgagcacacaaaca
gctggcttcagaaagatccacattttactacatttttgtggggagcaggt
gtggcggcagtcccaaaggcgccagggactgcagctaagtcatatgactt
gcacctgacttcctcatataagaaacaaacatctggagtgctgggcaggt
gtaccaggataccggtgaatccaatttgatggagatatgcccctgctgcc
ctgattagctgaagctgcgtgcctggtgaggtggcgtggcctgctgtgcg
tggatgagagagagtataaaaggagtgagaggcccagggttcggggggag
atataaaacaaggaagatataaaaacaaggagaatataaacagggagaat
ataaaacagggaga
gaattcaatgaaaatgaaggcatagcatatccaaacttacgggatacaat
gaaagcagtgctaagaggaaagttcatagcattaagagccttcataaaga
aattgaagaacaaatcaaagaatcaacaaaatcaagggatggttctttga
gaaaaatcaacaagatagccaaatcattagccaaactaactaaaaggcag
agaaagaatattcaaattatcaaaatcaaaaatggaaagggggagaaaac
aacagacacagagaaaaatccaagaaatcattaggacttacttcaaaaac
ctgtactctgcagaattggaaatataaatgaaatggatgactttcttgac
agatactatgtaccaaagttaaaccaagatcagataaactacttaaatat
taccataatttctaaggaaatagaagcagtcattaaaatcttctaatctt
taaaaagggccagatggtttaagcatagaattctaccaggctttcaaata
ttcctccaactagttcacaaattaaaaacaaaaggaacagtcaccctcat
acctaaaccacacaaagactcaacaaagaaagagaatttcagatcaattt
cccttatgaatattgatgcaaaaaatactcaataaaaaacttgaaaagct
aattcaagaacacactaaaaatgtgagggttaaaaaaacaaaacaaaaca
aaacaaaacaaaaaaaacaacaacaacaacaacaacaaaaacacactaaa
acatcatcaaccatgatcaaataggttttatcccaggtatgcagggatgg
tcaaatataaaaaattccatcaattaaatccaccataaaaagaaactgaa
agaaaaaaatcacaagatcatctcattagatgtagaaattttttggtggg
gagggttccaaaggtccacagaggactctccacaccacagggcccctagc
aaacccagggcctcagttcacgagtgagtggaaaccaacatcagttccaa
agaatcccggaggtcttgtgccagcagaacagggacaaaggaaccccacc
tgacctgaatttctgtgctccaaatgaaagggcagccacattcataaata
aaatttagtaaagctcaagcacacattgcacctccaccaaagtagtgtag
cctccaacctccatttatcatggacgaacctgatcgaaactacaggaacc
atggaccaccatacgagaaggttttatgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_78065040_78066105
seq2: B6Ng01-328J09.b_48_1111 (reverse)

seq1  TCTCCCTTGTTTTTATATCTCCCTTGTTTATATCTCCCTTGTTTTTATAT  50
      |||||||  ||| ||| |||||| |||||||||   ||||||||||||||
seq2  TCTCCCTGTTTTATAT-TCTCCC-TGTTTATATTCTCCTTGTTTTTATAT  48

seq1  CTCCCTTGTTTTTATATCT-CCCCCGAACCCTGGGCCTCTCACTCCTTTT  99
      || ||||| |||||||||| ||||||||||||||||||||||||||||||
seq2  CTTCCTTG-TTTTATATCTCCCCCCGAACCCTGGGCCTCTCACTCCTTTT  97

seq1  ATACTCTCTCTCATCCACGCACAGCAGGCCACGCCACCTCACCAGGCACG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCTCTCTCATCCACGCACAGCAGGCCACGCCACCTCACCAGGCACG  147

seq1  CAGCTTCAGCTAATCAGGGCAGCAGGGGCATATCTCCATCAAATTGGATT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTCAGCTAATCAGGGCAGCAGGGGCATATCTCCATCAAATTGGATT  197

seq1  CACCGGTATCCTGGTACACCTGCCCAGCACTCCAGATGTTTGTTTCTTAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGGTATCCTGGTACACCTGCCCAGCACTCCAGATGTTTGTTTCTTAT  247

seq1  ATGAGGAAGTCAGGTGCAAGTCATATGACTTAGCTGCAGTCCCTGGCGCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGAAGTCAGGTGCAAGTCATATGACTTAGCTGCAGTCCCTGGCGCC  297

seq1  TTTGGGACTGCCGCCACACCTGCTCCCCACAAAAATGTAGTAAAATGTGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGACTGCCGCCACACCTGCTCCCCACAAAAATGTAGTAAAATGTGG  347

seq1  ATCTTTCTGAAGCCAGCTGTTTGTGTGCTCATTGATAATTTTGAACCAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCTGAAGCCAGCTGTTTGTGTGCTCATTGATAATTTTGAACCAAA  397

seq1  GTACTTAGATGTATTTCTCATTTGGATAGATATGTTTTCCTGTCATGATC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTAGATGTATTTCTCATTTGGATAGATATGTTTTCCTGTCATGATC  447

seq1  ACTGTTATTAGTCACATTGCAAAATGTATGGCAGGTTATATGGAGGTTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTATTAGTCACATTGCAAAATGTATGGCAGGTTATATGGAGGTTTT  497

seq1  AGTAGCAATAAGGTTTCTAAAGAGTAGGAGGTCTTGGAAAATTGAGAAGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCAATAAGGTTTCTAAAGAGTAGGAGGTCTTGGAAAATTGAGAAGA  547

seq1  ATACAAAACCAAGACATCAGAGCAAAAGTGTGCATGTGTGTGCGCACGTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAAACCAAGACATCAGAGCAAAAGTGTGCATGTGTGTGCGCACGTG  597

seq1  TCCAGATGTGCACATTCTATGGTGTGCATGTAGAGATCAAAAGAAAACCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGATGTGCACATTCTATGGTGTGCATGTAGAGATCAAAAGAAAACCC  647

seq1  TAGGTGTTGGTTCTTACCATCTTACCTTGTTTGAGATGGGATCACTATTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGTTGGTTCTTACCATCTTACCTTGTTTGAGATGGGATCACTATTG  697

seq1  TTTGTTCACTGTGTTGTCTAGGGTATTGAGCCTGAGAGTGTCTCTGGGAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCACTGTGTTGTCTAGGGTATTGAGCCTGAGAGTGTCTCTGGGAT  747

seq1  TCTCTTGTCTCCACTTCTCATATCCTTATTGGAGCCTTGGAATAGCAAAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTGTCTCCACTTCTCATATCCTTATTGGAGCCTTGGAATAGCAAAC  797

seq1  ACTTGCCCTGCGTGTCCTTACTCACACAAAATCCCCAAGACAGATTTGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCCCTGCGTGTCCTTACTCACACAAAATCCCCAAGACAGATTTGAA  847

seq1  CTATGGTCTTCACATTTGCTTAGCAGGTGCTAGCTCCCCAGCAGAGTCAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGTCTTCACATTTGCTTAGCAGGTGCTAGCTCCCCAGCAGAGTCAC  897

seq1  CGCTTGCTATGCCATTATAGTACGTGCTTAGCCATATACACAATCAATGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTGCTATGCCATTATAGTACGTGCTTAGCCATATACACAATCAATGG  947

seq1  AGACATAAGTAAAAAAATCAAAAGCTATACTTGGCCAGGTGGGTCTTCCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATAAGTAAAAAAATCAAAAGCTATACTTGGCCAGGTGGGTCTTCCA  997

seq1  AGCTAGTTCTGATACATCTGGCTTTAAGCAAGGCACTGTACTTCATATTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGTTCTGATACATCTGGCTTTAAGCAAGGCACTGTACTTCATATTT  1047

seq1  CTTTTGAAGGAGAATTC  1066
      |||||||||||||||||
seq2  CTTTTGAAGGAGAATTC  1064