BAC Information

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BAC

Clone NameB6Ng01-329F16
Chromosome8 (Build37)
Map Location 86,716,348 - 86,717,105
singlet/doubletsinglet
Overlap genenone
Upstream geneTbc1d9, Ucp1, Elmod2, 4933434I20Rik, Clgn, Scoc, LOC546077, LOC675854, Olfr370, Ndufb7, Gpsn2, Dnajb1, Gipc1, Ptger1, Pkn1, Ddx39, Cd97, EG384857, Lphn1, Asf1b, Prkaca, Samd1, 1700067K01Rik, 2210011C24Rik, 4432412L15Rik, Il27ra, Rln3, C330011M18Rik, Rfx1, BC057552, LOC100039920, Podnl1, Cc2d1a, 4930432K21Rik, Nanos3
Downstream geneZswim4, D8Ertd738e, 2410018C20Rik, Ccdc130, Cacna1a, Ier2, LOC100039975, Btbd14b, Trmt1, LOC100039997, Lyl1, Nfix, Dand5, Gadd45gip1, Rad23a, Calr, LOC546080, Farsa, Syce2, Gcdh, Klf1, Dnase2a, Mast1, Rtbdn, Rnaseh2a, LOC666841, Prdx2, Junb, Hook2, Best2, Asna1, 2310036O22Rik, Tnpo2, Fbxw9, EG436049, Dhps, 1500041N16Rik, BC056474, Man2b1, EG244556, EG624855
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-329F16.bB6Ng01-329F16.g
ACCGA116339GA116340
length7591,182
definitionB6Ng01-329F16.b B6Ng01-329F16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcaaaccggtccggagctagcttcttcctgcctcctttataata
aatggagaaactgaggctgcaagaactttgtgcaggcgatagattcaaag
tggtccgtggaggcaccagagcaggttactcctaaaacaaggcctccatt
ttactaatgtaaatggtaaactgaggcagcagcccaaagcccaggcctgc
ccggctgcgcccccgcctcagtcctctcgtcgccgccagccctgggctgc
aggccagcccgcccggcgcccgcccgtccgcgtcacgccgcgatgagtca
ccgcccgccccgcccccgcgccaacaaacatcgtgttgcccggcaacgtc
ctccaacatccttcggccggggttcgagcctcctagccctgacaggagtc
tggcagggacgctcccctgatgattttccccacgtcggggttcagatcgg
tccttgcagtaccgatatgtgctgaaggttaagggagacttctgtgttcc
ggttccggtgtgagaacaatcgagttgagaaccagactcacccctgtatg
cccgtggaaaggccgatgggaactggactctcaagagtcaaagtggctct
cctataagcagccgacttggatagggattgcagtccaaagtctgccacag
gggcatttctatttctgctaaactgctaaacttccaggatcgctgcaggt
gtttgacatctgtcattaataagtattgttcttgattttttttggggggg
gggagaagt
gaattcttggaatttttcagagagtatgtaaatgcttaagccctgatagg
caacatgggttgtagactgttccagggggctggttggagtatgaaagatg
cacggttctctatctctcccctctgccctttctttcctatctagtggcag
aaggtgaaaccaggaggataaagaatggggaaagaagaacccacaaagta
gcaaatattgggtacaactagatagtgacccaatagagtgattgaataaa
cagatgaccacaaagaaaaatcacctgaagaagcagaagaaatagacaga
aattggtatcaggagtggggtgttgctatgatagttctgtcatccatgta
tttttagaaggattttggtggcatttcaactttgggctgggaaagccatt
gagttctcagaactcagtggactgtttctgtgggaccttgggagatagta
atactgaaagcagtacagatgataggagtctggcttgtgaagtttcagaa
ggaagttttcaaagactattggggccattcagcattttgaattaaaaacc
tgtgatctggtcttctggggctgaagaatcagctgtgattgacaaatatc
agaaccactaaagttaaacctttgctgtgctgggacaatcaatactggtc
aggtggggctaaagaataggctgtgattaagaagagatcagcatcattga
ggtgatatcttttgggaagtgttttctcaaggtaagcacatagaagctgt
ggtccagagggagccaaagttgcatcatatgctggtaactgaacttggta
atgtaagagtttccttcccaggtggtattgggtttgaagccatgagggaa
tcatggcaaacagttaaagcttggtaccatgagagtccagaagaggccac
tgggtgaaggagaagaatcagttgcagtagaagctccaggatttaaggac
tcgtggagagagatgaggcttaagaatcatgtgcaaaggttcagaatcct
caacagagcccaggagagactattgatgaagtgtaggctggagtgcagtg
gagaaccagcatttgagacatcattactgttaagatgatcatcgagcctg
atgcaactgtggggatgagctgccttaccttggaccagctgccatacact
gcgtgaacggcgcagaaatcctgtggacagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_86716348_86717105
seq2: B6Ng01-329F16.b_46_804

seq1  GAATTCTCAAACCGGTCCGGAGCTAGCTTCTTCCTGCCTCCTTTATAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAACCGGTCCGGAGCTAGCTTCTTCCTGCCTCCTTTATAATA  50

seq1  AATGGAGAAACTGAGGCTGCAAGAACTTTGTGCAGGCGATAGATTCAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGAAACTGAGGCTGCAAGAACTTTGTGCAGGCGATAGATTCAAAG  100

seq1  TGGTCCGTGGAGGCACCAGAGCAGGTTACTCCTAAAACAAGGCCTCCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCGTGGAGGCACCAGAGCAGGTTACTCCTAAAACAAGGCCTCCATT  150

seq1  TTACTAATGTAAATGGTAAACTGAGGCAGCAGCCCAAAGCCCAGGCCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAATGTAAATGGTAAACTGAGGCAGCAGCCCAAAGCCCAGGCCTGC  200

seq1  CCGGCTGCGCCCCCGCCTCAGTCCTCTCGTCGCCGCCAGCCCTGGGCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCTGCGCCCCCGCCTCAGTCCTCTCGTCGCCGCCAGCCCTGGGCTGC  250

seq1  AGGCCAGCCCGCCCGGCGCCCGCCCGTCCGCGTCACGCCGCGATGAGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGCCCGCCCGGCGCCCGCCCGTCCGCGTCACGCCGCGATGAGTCA  300

seq1  CCGCCCGCCCCGCCCCCGCGCCAACAAACATCGTGTTGCCCGGCAACGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCCGCCCCGCCCCCGCGCCAACAAACATCGTGTTGCCCGGCAACGTC  350

seq1  CTCCAACATCCTTCGGCCGGGGTTCGAGCCTCCTAGCCCTGACAGGAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAACATCCTTCGGCCGGGGTTCGAGCCTCCTAGCCCTGACAGGAGTC  400

seq1  TGGCAGGGACGCTCCCCTGATGATTTTCCCCACGTCGGGGTTCAGATCGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGGGACGCTCCCCTGATGATTTTCCCCACGTCGGGGTTCAGATCGG  450

seq1  TCCTTGCAGTACCGATATGTGCTGAAGGTTAAGGGAGACTTCTGTGTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGCAGTACCGATATGTGCTGAAGGTTAAGGGAGACTTCTGTGTTCC  500

seq1  GGTTCCGGTGTGAGAACAATCGAGTTGAGAACCAGACTCACCCCTGTATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCGGTGTGAGAACAATCGAGTTGAGAACCAGACTCACCCCTGTATG  550

seq1  CCCGTGGAAAGGCCGATGGGAACTGGACTCTCAAGAGTCAAAGTGGCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTGGAAAGGCCGATGGGAACTGGACTCTCAAGAGTCAAAGTGGCTCT  600

seq1  CCTATAAGCAGCCGACTTGGATAGGGATTGCAGTCCAAAGTCTGCCACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATAAGCAGCCGACTTGGATAGGGATTGCAGTCCAAAGTCTGCCACAG  650

seq1  GGGCATTTCTATTTCTGCTAAACTGCTAAACTTCCAGGATCGCTGCAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATTTCTATTTCTGCTAAACTGCTAAACTTCCAGGATCGCTGCAGGT  700

seq1  GTTTGACATCTGTCATTAATAAGTATTGTTCTTGATTTTTTTT-GGGGGG  749
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTTTGACATCTGTCATTAATAAGTATTGTTCTTGATTTTTTTTGGGGGGG  750

seq1  GGGAGAAGT  758
      |||||||||
seq2  GGGAGAAGT  759