BAC Information

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BAC

Clone NameB6Ng01-329G13
Chromosome5 (Build37)8 (Build37)
Map Location 97,401,610 - 97,402,72586,296,275 - 86,296,364
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG666231, Cnot6l, LOC100040559, Mrpl1, Fras1, Anxa3, EG666266
Downstream geneLOC670358, Bmp2k, Paqr3, LOC100040598, EG433923, EG666293, C80008, Gk2, Antxr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-329G13.bB6Ng01-329G13.g
ACCGA116381GA116382
length1,108401
definitionB6Ng01-329G13.b B6Ng01-329G13.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(97,401,610 - 97,402,725)(86,296,275 - 86,296,364)
sequence
gaattcaaggccagcctgaggaggtggtgaagtatttccttcagtgatct
ttgcttcacagctggatactcttcctttatcgcctgctaactcattggac
cacatgactttcagtgacttcagaactgagtcatttgacatttgtcttca
ttagggtttttattgctgtgaagagataccatgaccgcagcaactcttag
aaagaaaaacatttaattgggggccaacttatcagacatggtgctagaca
agctgctgtcagttctacatcttgatccaaaggcagcaggaagacaaagt
gataacttcctcagacaacgccacacctattccagtaagactgcacctcc
taactgtgccactccctgtgggctaatgggggccatttttatgcaaagca
ctaaaacgttattctgaaaaataaaatctggtgacctcttgccagctctg
atcttgggttctggaccaaatctgacatggcctttccctcgcctcttggg
ttccagacaccactgtctccaggctcacacagcttccctggttttctccc
aagctactgtcaccatgtatggcactctgattgagacacatcaatgtttc
cacattagagatgacccatcttttgtctggtctccttcagcggcacctag
aactagaacatttgtgctctttccaggggcttattaattattattttgtg
tggctacatatatagagctcaggcaataacttagcaaatatttctcacat
ccataaatggatgtgcatatttcagttcaaatgattttagttgacttgga
gggagaacagattctcttatagtgtacttgaacaaattcaagcaagagga
aaaattctcagagaagtgttaatgttgtgatattattaacagatgggtac
aagcacttaagatctggttatttctttttaaagtgacatggctaaacaag
tctgtggcttgagtgattcctggagtccacatacgtagatgagagactga
ctccacagttattgccgtgctctatgtattgtgccacacaaaataataat
attaagtgattttcaacaccaatgtttaaatgaacttgtttgaattctat
tgcatttt
gaattccttaagacacaataattacaacactgaacatacagaacaatgaa
agaattttaaaagttgcaagggggaaaagaccaagtaacatacaaaggaa
gacccactagaatagcatcttaattttctttcttttttctttctttctct
ctctctctctctctctctctctctctctctctctctctctctctctctct
ctctctctctctctctcacttattgagagtgagagtgtatgtctctgtat
ctgtcttcagacactctctatgagggcgtcgcatctccgtccctgtggct
ggggggcgggaggtgggtgcggggatataaaaacagaaactttggtagat
gtgtgtgtatgtgcacgcactgactcacccccccacgctgtgtgtgtgtg
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_97401610_97402725
seq2: B6Ng01-329G13.b_47_1154

seq1  GAATTCAAGGCCAGCCTGAGGAGGTGGTGAAGTATTTCCTTCAGTGATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCCAGCCTGAGGAGGTGGTGAAGTATTTCCTTCAGTGATCT  50

seq1  TTGCTTCACAGCTGGATACTCTTCCTTTATCGCCTGCTAACTCATTGGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCACAGCTGGATACTCTTCCTTTATCGCCTGCTAACTCATTGGAC  100

seq1  CACATGACTTTCAGTGACTTCAGAACTGAGTCATTTGACATTTGTCTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGACTTTCAGTGACTTCAGAACTGAGTCATTTGACATTTGTCTTCA  150

seq1  TTAGGGTTTTTATTGCTGTGAAGAGATACCATGACCGCAGCAACTCTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGTTTTTATTGCTGTGAAGAGATACCATGACCGCAGCAACTCTTAG  200

seq1  AAAGAAAAACATTTAATTGGGGGCCAACTTATCAGACATGGTGCTAGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAACATTTAATTGGGGGCCAACTTATCAGACATGGTGCTAGACA  250

seq1  AGCTGCTGTCAGTTCTACATCTTGATCCAAAGGCAGCAGGAAGACAAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTGTCAGTTCTACATCTTGATCCAAAGGCAGCAGGAAGACAAAGT  300

seq1  GATAACTTCCTCAGACAACGCCACACCTATTCCAGTAAGACTGCACCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACTTCCTCAGACAACGCCACACCTATTCCAGTAAGACTGCACCTCC  350

seq1  TAACTGTGCCACTCCCTGTGGGCTAATGGGGGCCATTTTTATGCAAAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGTGCCACTCCCTGTGGGCTAATGGGGGCCATTTTTATGCAAAGCA  400

seq1  CTAAAACGTTATTCTGAAAAATAAAATCTGGTGACCTCTTGCCAGCTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAACGTTATTCTGAAAAATAAAATCTGGTGACCTCTTGCCAGCTCTG  450

seq1  ATCTTGGGTTCTGGACCAAATCTGACATGGCCTTTCCCTCGCCTCTTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGGGTTCTGGACCAAATCTGACATGGCCTTTCCCTCGCCTCTTGGG  500

seq1  TTCCAGACACCACTGTCTCCAGGCTCACACAGCTTCCCTGGTTTTCTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGACACCACTGTCTCCAGGCTCACACAGCTTCCCTGGTTTTCTCCC  550

seq1  AAGCTACTGTCACCATGTATGGCACTCTGATTGAGACACATCAATGTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTACTGTCACCATGTATGGCACTCTGATTGAGACACATCAATGTTTC  600

seq1  CACATTAGAGATGACCCATCTTTTGTCTGGTCTCCTTCAGCGGCACCTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTAGAGATGACCCATCTTTTGTCTGGTCTCCTTCAGCGGCACCTAG  650

seq1  AACTAGAACATTTGTGCTCTTTCCAGGGGCTTATTAATTATTATTTTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGAACATTTGTGCTCTTTCCAGGGGCTTATTAATTATTATTTTGTG  700

seq1  TGGCTACATATATAGAGCTCAGGCAATAACTTAGCAAATATTTCTCACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTACATATATAGAGCTCAGGCAATAACTTAGCAAATATTTCTCACAT  750

seq1  CCATAAATGGATGTGCATATTTCAGTTCAAATGATTTTAGTTGACTTGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAATGGATGTGCATATTTCAGTTCAAATGATTTTAGTTGACTTGGA  800

seq1  GGGAGAACAGATTCTCTTATAGTGTACTTGAACAAATTCAAGCAAGAGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAACAGATTCTCTTATAGTGTACTTGAACAAATTCAAGCAAGAGGA  850

seq1  AAAATTCTCAGAGAAGTGTTAATGTTGTGATATTATTAACAGATGGGTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCTCAGAGAAGTGTTAATGTTGTGATATTATTAACAGATGGGTAC  900

seq1  AAGCACTTAAGATCTGGTTATTTCTTTTTAAAGTGACATGGCTAAACAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTTAAGATCTGGTTATTTCTTTTTAAAGTGACATGGCTAAACAAG  950

seq1  TCTGTGGCTTGAGGTTGATTCCTGGAGTCCACATACGGTAGAAGGAGAGA  1000
      |||||||||||||  ||||||||||||||||||||| |||| | ||||| 
seq2  TCTGTGGCTTGAG--TGATTCCTGGAGTCCACATAC-GTAG-ATGAGAG-  995

seq1  ACTGACTCCACAGTTATTGCCCGTGCTCTATGTATGTGGCCACACAAAAT  1050
      ||||||||||||||||||| |||||||||||||||   ||||||||||||
seq2  ACTGACTCCACAGTTATTG-CCGTGCTCTATGTATTGTGCCACACAAAAT  1044

seq1  AATAATTAATAAGTGATTTTTCAACACCAAATGTTT-AATG-ACTGTTTT  1098
      ||||| || ||||||| ||||||||||| ||||||| |||| |||  |||
seq2  AATAA-TATTAAGTGA-TTTTCAACACC-AATGTTTAAATGAACTTGTTT  1091

seq1  AAATTTCTATTGCATTTT  1116
       || ||||||||||||||
seq2  GAA-TTCTATTGCATTTT  1108

seq1: chr8_86296275_86296364
seq2: B6Ng01-329G13.g_211_467

seq1  TTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  50

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGT----------  90
      ||||||||||||||||||||||| ||   || | ||| |           
seq2  CTCTCTCTCTCTCTCTCTCTCTCACTTATTGAGAGTGAGAGTGTATGTCT  100

seq1  --------------------------------------------------  90
                                                        
seq2  CTGTATCTGTCTTCAGACACTCTCTATGAGGGCGTCGCATCTCCGTCCCT  150

seq1  --------------------------------------------------  90
                                                        
seq2  GTGGCTGGGGGGCGGGAGGTGGGTGCGGGGATATAAAAACAGAAACTTTG  200

seq1  --------------------------------------------------  90
                                                        
seq2  GTAGATGTGTGTGTATGTGCACGCACTGACTCACCCCCCCACGCTGTGTG  250

seq1  -------  90
             
seq2  TGTGTGT  257