BAC Information

Click to search

BAC

Clone NameB6Ng01-330K15
Chromosome8 (Build37)
Map Location 52,893,076 - 53,049,607
singlet/doubletdoublet
Overlap geneLOC623872
Upstream geneLOC667517
Downstream geneLOC100040220, LOC623935, 1190028D05Rik, LOC676688
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-330K15.bB6Ng01-330K15.g
ACCGA117261GA117262
length1,228856
definitionB6Ng01-330K15.b B6Ng01-330K15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,893,076 - 52,894,311)(53,049,066 - 53,049,607)
sequence
tcttgaggtgaaagcagaagtattagaacttcaagttctactttgtctag
gcagaatgtaaatggtcatctcaggcaatatgaaacactgtctttagata
gatagatagatagatagatagatagatagatagatagataaacagacttc
aataaaatataacaaaacacaattattagaaataattattttcaatatta
aagatacatatgaataagctagtgttaatcatgtttaagctctggctctt
tttgttcttttttgatgttttaattaattatatgctaattcttagttacc
aatacctttaaggattctaacagaaaagatatacaattgtgatgtaaact
aattaatctcttgaagctattaatttgttaatactgctgaaaattttaca
gttaatatcgttggtggaatattattctgaatggctcttgtttcccttag
tctttgtaatctctgttaaaagaacactggcatatcacattgaatagagt
ataaaaaaataaggtttattttagggataacaggaataacaacgttacag
gattttaaagaaaacatctagtaaagaatctcattaattttattcgggga
aagtgtgcagtcaacctcagtaatttcttcatccttggaaagctttcagc
atacagtaattgaacatttttccccaaggtcaccgagtaaggaagaggta
ccatatgggatgtcatagtactagacaaaagattctatgctcttaactgt
attggccagtagagtgatcccagagtagttgatcaggaaaccaagttgct
ctgcctaattctctaactaattatcaatgatcccaggcaagttagttatc
aactctttctttaatttatttccttctcccatattttttaaagagctacc
ttacctctacttagagctaagagacttacaatcagacaatactatatgcg
ctaatgccatcattactacagtgtatctcagactggaatcactccctggt
tatgggtaagaagataatttagtatcttaaggatacactactacttagac
ctgcataattccaccaggaaggaacattagaagccacatttaggactatt
tactttagtgtggctcaataatccagttgccaaattgtagctgcttgcat
tcttttagcacaaaacaggccaaccataatactggaatcagggtgaagat
taagcggtctaatatctgctttctcaag

gaattcacttggtggcttataatagtttgctttttgcttgttttcttttg
ctataaatagaaattttctcacacaatatattctgattatggcttccatt
ccctctacttctcctagtagcaactctctgcccatgcaacccacccatga
tgctctctcattagaaaacaagctatctttaataaagaattaatgataaa
aatataaaaggataaaagaaaacttaaatacctctgagtaaaagaaaata
gagaaacaaaataaaaagagccagtaggaaggcaaaagaagcagatgtag
atgcagatacttacttctttgcacatcagaaattgcataaaaacactaaa
aaaataagacaaaagatgccaaggcaaaaagtagtaggcaggcgtggtgg
caaacacctttaatcccagcagtcaggaagcaaaggcaggcagatttctg
agttcgaggccagcctggtctagaaagtgagttccaggacagccagggtt
acacagaaaaaccctatcttgaaaaaaacaaaaaacaaaaacaaaaacaa
acaaacaaacaaaaaattaaggaaaacatgcatccattgttattgttggg
agtgcaaatttgtacagacatcatggaaattagagtgacatttttacagg
aagatttgaagccatctatatcaggatccagctacagcactcttagacat
atcctcaaaggacacttcatactatgacaaaaacaattgctcaaccatgt
tctttggtgctccattcacaatacccagaaatcagacagcattttgttac
taaacagaaaaaatggtaaaggaaatatgatacattttacacaatggaat
attact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_52893076_52894311
seq2: B6Ng01-330K15.b_57_1284

seq1  TCTTGAGGTGAAAGCAGAAGTATTAGAACTTCAAGTTCTACTTTGTCTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAGGTGAAAGCAGAAGTATTAGAACTTCAAGTTCTACTTTGTCTAG  50

seq1  GCAGAATGTAAATGGTCATCTCAGGCAATATGAAACACTGTCTTTAGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAATGTAAATGGTCATCTCAGGCAATATGAAACACTGTCTTTAGATA  100

seq1  GATAGATAGATAGATAGATAGATAGATAGATAGATAGATAAACAGACTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGATAGATAGATAGATAGATAGATAGATAGATAGATAAACAGACTTC  150

seq1  AATAAAATATAACAAAACACAATTATTAGAAATAATTATTTTCAATATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATATAACAAAACACAATTATTAGAAATAATTATTTTCAATATTA  200

seq1  AAGATACATATGAATAAGCTAGTGTTAATCATGTTTAAGCTCTGGCTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATACATATGAATAAGCTAGTGTTAATCATGTTTAAGCTCTGGCTCTT  250

seq1  TTTGTTCTTTTTTGATGTTTTAATTAATTATATGCTAATTCTTAGTTACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCTTTTTTGATGTTTTAATTAATTATATGCTAATTCTTAGTTACC  300

seq1  AATACCTTTAAGGATTCTAACAGAAAAGATATACAATTGTGATGTAAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCTTTAAGGATTCTAACAGAAAAGATATACAATTGTGATGTAAACT  350

seq1  AATTAATCTCTTGAAGCTATTAATTTGTTAATACTGCTGAAAATTTTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATCTCTTGAAGCTATTAATTTGTTAATACTGCTGAAAATTTTACA  400

seq1  GTTAATATCGTTGGTGGAATATTATTCTGAATGGCTCTTGTTTCCCTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATATCGTTGGTGGAATATTATTCTGAATGGCTCTTGTTTCCCTTAG  450

seq1  TCTTTGTAATCTCTGTTAAAAGAACACTGGCATATCACATTGAATAGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTAATCTCTGTTAAAAGAACACTGGCATATCACATTGAATAGAGT  500

seq1  ATAAAAAAATAAGGTTTATTTTAGGGATAACAGGAATAACAACGTTACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAAATAAGGTTTATTTTAGGGATAACAGGAATAACAACGTTACAG  550

seq1  GATTTTAAAGAAAACATCTAGTAAAGAATCTCATTAATTTTATTCGGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTAAAGAAAACATCTAGTAAAGAATCTCATTAATTTTATTCGGGGA  600

seq1  AAGTGTGCAGTCAACCTCAGTAATTTCTTCATCCTTGGAAAGCTTTCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGCAGTCAACCTCAGTAATTTCTTCATCCTTGGAAAGCTTTCAGC  650

seq1  ATACAGTAATTGAACATTTTTCCCCAAGGTCACCGAGTAAGGAAGAGGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTAATTGAACATTTTTCCCCAAGGTCACCGAGTAAGGAAGAGGTA  700

seq1  CCATATGGGATGTCATAGTACTAGACAAAAGATTCTATGCTCTTAACTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATGGGATGTCATAGTACTAGACAAAAGATTCTATGCTCTTAACTGT  750

seq1  ATTGGCCAGTAGAGTGATCCCAGAGTAGTTGATCAGGAAACCAAGTTGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCCAGTAGAGTGATCCCAGAGTAGTTGATCAGGAAACCAAGTTGCT  800

seq1  CTGCCTAATTCTCTAACTAATTATCAATGATCCCAGGCAAGTTAGTTATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTAATTCTCTAACTAATTATCAATGATCCCAGGCAAGTTAGTTATC  850

seq1  AACTCTTTCTTTAATTTATTTCCTTCTCCCATATTTTTTAAAGAGCTACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTTCTTTAATTTATTTCCTTCTCCCATATTTTTTAAAGAGCTACC  900

seq1  TTACCTCTACTTAGAGCTAAGGAGACTTACAATCAGACAATACTATATGC  950
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTACCTCTACTTAGAGCTAA-GAGACTTACAATCAGACAATACTATATGC  949

seq1  GCTAATGCCATCATTACTACAGTGTATCTCAGAACTGGAATCACTCCCTG  1000
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GCTAATGCCATCATTACTACAGTGTATCTCAG-ACTGGAATCACTCCCTG  998

seq1  GTTATGGGTAAG-AGATAATTTAGTATCTTAAGGATAACACTACTACATA  1049
      |||||||||||| ||||||||||||||||||||||| |||||||||| | 
seq2  GTTATGGGTAAGAAGATAATTTAGTATCTTAAGGAT-ACACTACTAC-TT  1046

seq1  AGACCTGCATAATTCCACCA-GAAGAACAATTAG-AGGCACATTTTAAGA  1097
      |||||||||||||||||||| |||| |  ||||| || |||| |||| ||
seq2  AGACCTGCATAATTCCACCAGGAAGGAACATTAGAAGCCACA-TTTAGGA  1095

seq1  CTATTTACTTTAGTGTGGCTCATTAATCCAGTTTGCAAAATTGTAAGCTT  1147
      |||||||||||||||||||||| |||||||| |||| ||||||| ||| |
seq2  CTATTTACTTTAGTGTGGCTCAATAATCCAG-TTGCCAAATTGT-AGC-T  1142

seq1  GCTGGCATTCCTTTCTAGCCACAAACAGGCCAACACATAATACT-GAATC  1196
      ||| ||||||  || ||||   |||||||||||| ||||||||| |||||
seq2  GCTTGCATTC--TTTTAGCACAAAACAGGCCAAC-CATAATACTGGAATC  1189

seq1  AGGGTGAAGATTTTAGCTG-CTATATATCTGCTTTTTCAAG  1236
      |||||||||| || ||| | ||| ||||||||||| |||||
seq2  AGGGTGAAGA-TTAAGCGGTCTA-ATATCTGCTTTCTCAAG  1228


seq1: chr8_53049066_53049607
seq2: B6Ng01-330K15.g_68_609 (reverse)

seq1  GTTTTTGTTTTTTGTTTTTTTCAAGATAGGGTTTTTCTGTGTAACCCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGTTTTTTGTTTTTTTCAAGATAGGGTTTTTCTGTGTAACCCTGG  50

seq1  CTGTCCTGGAACTCACTTTCTAGACCAGGCTGGCCTCGAACTCAGAAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTGGAACTCACTTTCTAGACCAGGCTGGCCTCGAACTCAGAAATC  100

seq1  TGCCTGCCTTTGCTTCCTGACTGCTGGGATTAAAGGTGTTTGCCACCACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCCTTTGCTTCCTGACTGCTGGGATTAAAGGTGTTTGCCACCACG  150

seq1  CCTGCCTACTACTTTTTGCCTTGGCATCTTTTGTCTTATTTTTTTAGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTACTACTTTTTGCCTTGGCATCTTTTGTCTTATTTTTTTAGTGT  200

seq1  TTTTATGCAATTTCTGATGTGCAAAGAAGTAAGTATCTGCATCTACATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGCAATTTCTGATGTGCAAAGAAGTAAGTATCTGCATCTACATCT  250

seq1  GCTTCTTTTGCCTTCCTACTGGCTCTTTTTATTTTGTTTCTCTATTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTTTGCCTTCCTACTGGCTCTTTTTATTTTGTTTCTCTATTTTCT  300

seq1  TTTACTCAGAGGTATTTAAGTTTTCTTTTATCCTTTTATATTTTTATCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTCAGAGGTATTTAAGTTTTCTTTTATCCTTTTATATTTTTATCAT  350

seq1  TAATTCTTTATTAAAGATAGCTTGTTTTCTAATGAGAGAGCATCATGGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTTTATTAAAGATAGCTTGTTTTCTAATGAGAGAGCATCATGGGT  400

seq1  GGGTTGCATGGGCAGAGAGTTGCTACTAGGAGAAGTAGAGGGAATGGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGCATGGGCAGAGAGTTGCTACTAGGAGAAGTAGAGGGAATGGAAG  450

seq1  CCATAATCAGAATATATTGTGTGAGAAAATTTCTATTTATAGCAAAAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAATCAGAATATATTGTGTGAGAAAATTTCTATTTATAGCAAAAGAA  500

seq1  AACAAGCAAAAAGCAAACTATTATAAGCCACCAAGTGAATTC  542
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGCAAAAAGCAAACTATTATAAGCCACCAAGTGAATTC  542


| Home | SequenceCutter | Blast | Download |