BAC Information

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BAC

Clone NameB6Ng01-330P16
Chromosome8 (Build37)
Map Location 37,678,158 - 37,793,657
singlet/doubletdoublet
Overlap genenone
Upstream geneMfhas1, LOC100041572, Gm501, Cldn23, LOC671641, D8Ertd82e, Lonrf1, EG544878, 6430573F11Rik, Dlc1, LOC100042892
Downstream geneA730069N07Rik, AI429214, LOC666877, LOC100041616, 1700016D18Rik, LOC641121, LOC621149, Sgcz
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-330P16.bB6Ng01-330P16.g
ACCGA117473GA117474
length699889
definitionB6Ng01-330P16.b B6Ng01-330P16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,792,959 - 37,793,657)(37,678,158 - 37,679,038)
sequence
gaattcttcacgttacttggctccgagagaagtgtaggcatgctgggttg
tttatatagtggagaatgtgggcaaagaaaatgaacctgcgcttcaactg
acgctgatgactagggacctggacactgtgtgtcctccctggtcgttggc
tcatggctgacactgtcagtatttgtaaactagagacgggtctgttgcac
atccaaacctcaagcgtgctcactgccactcatcccttccagcaactctc
cacttaaccctcccactgaccaaaacactaaagcccagctgtttggagtt
cacggagagtcattttctgaacagcgaagaaaattgttattatatgacac
ccctgcttggccttcccttgcagaatggagggcaaggcggtagaagatcc
cccacctccctcttcactgtgcgacaaatgaggtgacaggtaagggagtt
ggaagcatcggtggaaagtacttctgctcatagtggctggactgccacgg
ctgtggtgctgatggtcctggtgacttgcacaggcttctctacgaccaat
cacagggtgtggctgtttctacttaggcaaagagtttgatcatgggatga
agttttacagtttcctttttaggttatttctgtcttgcccatgtcttggt
cagagtctctctctctctctctctctctctctctctctctctctctctc

gaattccttagtttggagggtacattcagcctcattgaggcagatcggtg
ttgccagggtatttacctgcaggcaaatgctggagacccaaaggcagtgc
agggtgcatgtggcccctgcctgccaggagactacagactgggaagcaag
ggggtgaatggaaatgagggactgttgagggcccaggaagtgaagacctt
gatagcccaagaagatgaagttgccgcctgaagtgtggatgctggaggaa
ctgtggactcatccacaattagcatccccacctggtactcacatctctga
atgcactagggcctcattctaagtcgcatataatttgcatatagcttatg
cacactctcccagatactttttaaataattattatcgtattgataactct
tagagtatgaaatacattgtaagcactatgtagatttgtctatgttcagt
atagacacatttatttttcctcctaatactttctctttgcatgattaggc
atagaatttaggatagagctagtcatatgcccttccactgagctacaccc
ctatccccagcacctactttcaatttaaaaattattattattactattac
tactgctgctattattgttattgttgttgttgtgtgtgatgtgcatacag
acacacacacatgctacggtgtgtgtggaggtctgaggccaattttatgt
ttattctctccacttttacatgaattttgaaggatcaaattcaagtcatc
aggccctgcctggtgtctcggtttgtatcgctgtttgctgtgatagaaac
cccaaaaccaactaaggggaagaaagtggttattttcacctttgcagctt
acagtccatcaagaaaaggaaatacgggcatgaacacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_37792959_37793657
seq2: B6Ng01-330P16.b_48_746 (reverse)

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACTCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACTCTGA  50

seq1  CCAAGACATGGGCAAGACAGAAATAACCTAAAAAGGAAACTGTAAAACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGACATGGGCAAGACAGAAATAACCTAAAAAGGAAACTGTAAAACTT  100

seq1  CATCCCATGATCAAACTCTTTGCCTAAGTAGAAACAGCCACACCCTGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCATGATCAAACTCTTTGCCTAAGTAGAAACAGCCACACCCTGTGA  150

seq1  TTGGTCGTAGAGAAGCCTGTGCAAGTCACCAGGACCATCAGCACCACAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCGTAGAGAAGCCTGTGCAAGTCACCAGGACCATCAGCACCACAGC  200

seq1  CGTGGCAGTCCAGCCACTATGAGCAGAAGTACTTTCCACCGATGCTTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGCAGTCCAGCCACTATGAGCAGAAGTACTTTCCACCGATGCTTCCA  250

seq1  ACTCCCTTACCTGTCACCTCATTTGTCGCACAGTGAAGAGGGAGGTGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCTTACCTGTCACCTCATTTGTCGCACAGTGAAGAGGGAGGTGGGG  300

seq1  GATCTTCTACCGCCTTGCCCTCCATTCTGCAAGGGAAGGCCAAGCAGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTCTACCGCCTTGCCCTCCATTCTGCAAGGGAAGGCCAAGCAGGGG  350

seq1  TGTCATATAATAACAATTTTCTTCGCTGTTCAGAAAATGACTCTCCGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATATAATAACAATTTTCTTCGCTGTTCAGAAAATGACTCTCCGTGA  400

seq1  ACTCCAAACAGCTGGGCTTTAGTGTTTTGGTCAGTGGGAGGGTTAAGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAAACAGCTGGGCTTTAGTGTTTTGGTCAGTGGGAGGGTTAAGTGG  450

seq1  AGAGTTGCTGGAAGGGATGAGTGGCAGTGAGCACGCTTGAGGTTTGGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTGCTGGAAGGGATGAGTGGCAGTGAGCACGCTTGAGGTTTGGATG  500

seq1  TGCAACAGACCCGTCTCTAGTTTACAAATACTGACAGTGTCAGCCATGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACAGACCCGTCTCTAGTTTACAAATACTGACAGTGTCAGCCATGAG  550

seq1  CCAACGACCAGGGAGGACACACAGTGTCCAGGTCCCTAGTCATCAGCGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACGACCAGGGAGGACACACAGTGTCCAGGTCCCTAGTCATCAGCGTC  600

seq1  AGTTGAAGCGCAGGTTCATTTTCTTTGCCCACATTCTCCACTATATAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAAGCGCAGGTTCATTTTCTTTGCCCACATTCTCCACTATATAAAC  650

seq1  AACCCAGCATGCCTACACTTCTCTCGGAGCCAAGTAACGTGAAGAATTC  699
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAGCATGCCTACACTTCTCTCGGAGCCAAGTAACGTGAAGAATTC  699


seq1: chr8_37678158_37679038
seq2: B6Ng01-330P16.g_72_960

seq1  GAATTCCTTAGTTTGGAGGGTACATTCAGCCTCATTGAGGCAGATCGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAGTTTGGAGGGTACATTCAGCCTCATTGAGGCAGATCGGTG  50

seq1  TTGCCAGGGTATTTACCTGCAGGCAAATGCTGGAGACCCAAAGGCAGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAGGGTATTTACCTGCAGGCAAATGCTGGAGACCCAAAGGCAGTGC  100

seq1  AGGGTGCATGTGGCCCCTGCCTGCCAGGAGACTACAGACTGGGAAGCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGCATGTGGCCCCTGCCTGCCAGGAGACTACAGACTGGGAAGCAAG  150

seq1  GGGGTGAATGGAAATGAGGGACTGTTGAGGGCCCAGGAAGTGAAGACCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGAATGGAAATGAGGGACTGTTGAGGGCCCAGGAAGTGAAGACCTT  200

seq1  GATAGCCCAAGAAGATGAAGTTGCCGCCTGAAGTGTGGATGCTGGAGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCCCAAGAAGATGAAGTTGCCGCCTGAAGTGTGGATGCTGGAGGAA  250

seq1  CTGTGGACTCATCCACAATTAGCATCCCCACCTGGTACTCACATCTCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGACTCATCCACAATTAGCATCCCCACCTGGTACTCACATCTCTGA  300

seq1  ATGCACTAGGGCCTCATTCTAAGTCGCATATAATTTGCATATAGCTTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACTAGGGCCTCATTCTAAGTCGCATATAATTTGCATATAGCTTATG  350

seq1  CACACTCTCCCAGATACTTTTTAAATAATTATTATCGTATTGATAACTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTCTCCCAGATACTTTTTAAATAATTATTATCGTATTGATAACTCT  400

seq1  TAGAGTATGAAATACATTGTAAGCACTATGTAGATTTGTCTATGTTCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTATGAAATACATTGTAAGCACTATGTAGATTTGTCTATGTTCAGT  450

seq1  ATAGACACATTTATTTTTCCTCCTAATACTTTCTCTTTGCATGATTAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACACATTTATTTTTCCTCCTAATACTTTCTCTTTGCATGATTAGGC  500

seq1  ATAGAATTTAGGATAGAGCTAGTCATATGCCCTTCCACTGAGCTACACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAATTTAGGATAGAGCTAGTCATATGCCCTTCCACTGAGCTACACCC  550

seq1  CTATCCCCAGCACCTACTTTCAATTTAAAAATTATTATTATTACTATTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCCCAGCACCTACTTTCAATTTAAAAATTATTATTATTACTATTAC  600

seq1  TACTGCTGCTATTATTGTTATTGTTGTTGTTGTGTGTGATGTGCATACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCTGCTATTATTGTTATTGTTGTTGTTGTGTGTGATGTGCATACAG  650

seq1  ACACACACACATGCTACGGTGTGTGTGGAGGTCTGAGGCCAATTTTATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACATGCTACGGTGTGTGTGGAGGTCTGAGGCCAATTTTATGT  700

seq1  TTATTCTCTCCACTTTTACATGAA-TTTGAAGGATCAAATTCAAGTCATC  749
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTATTCTCTCCACTTTTACATGAATTTTGAAGGATCAAATTCAAGTCATC  750

seq1  AGG-CCTGCCTGGTGTCTCGGTTTGTATCGCTG-TTGCTGTGATAGAAA-  796
      ||| ||||||||||||||||||||||||||||| ||||||||||||||| 
seq2  AGGCCCTGCCTGGTGTCTCGGTTTGTATCGCTGTTTGCTGTGATAGAAAC  800

seq1  CACAAAACCAACTAAGGGGAAGAAAGT-GTTA-TTTCACC-TTGCAGCTT  843
      | ||||||||||||||||||||||||| |||| ||||||| |||||||||
seq2  CCCAAAACCAACTAAGGGGAAGAAAGTGGTTATTTTCACCTTTGCAGCTT  850

seq1  ACAGTCCATCAAG-AAAGGAAATACAGGCAGGAACACAG  881
      ||||||||||||| ||||||||||| |||| ||||||||
seq2  ACAGTCCATCAAGAAAAGGAAATACGGGCATGAACACAG  889


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