BAC Information

Click to search

BAC

Clone NameB6Ng01-332G19
Chromosome8 (Build37)
Map Location 108,291,241 - 108,429,628
singlet/doubletdoublet
Overlap geneRanbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1
Upstream gene4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2
Downstream geneCtrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-332G19.bB6Ng01-332G19.g
ACCGA118533GA118534
length1,158960
definitionB6Ng01-332G19.b B6Ng01-332G19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,291,241 - 108,292,415)(108,428,671 - 108,429,628)
sequence
gaattcactctgtagaccaggctggcatgtgccaccactgtccagcatgc
tttaaatatttaatgacaaagttttcccttcccttctctccctccagttt
tctccatgcacccattctgtcagtgtcattcctgaggtcggcatcagtgg
cctgtttcctgagggtgtgtgtagatagaccacctgctcagtccatgtta
cctttatgtgtaggattcagggcttgtcacttaggtaacaaatgtagggc
ctcttctctgaggaaaactatttcttctgctctcagcactcctcagttgc
cagtcaaaggctgaggcttcatgagagcgcccacttcaattggtgattca
ggtccagtttacgcagccacgctgaagagacttcatggatctaactgctg
acatttctagatgaaatctcacagcaaacttcctgttcctctggccctta
caattttcctgccccttcttccactatgaccctagatagagccttaggtg
gcagatttgtggcatccatcagttgagactgagccctatttcatctttga
aggaaaagaagacacaattgatagcccacatttctttttttgttttgttt
tttgtttttttttttttgttttttttttttgtttttgtttttgagacagg
gtttctctgtgtagccctggctgtcctggaactcactctgtagaccaggc
tggcctcgaactcagaaatacgcctgcctctgcctcccgagtgctgggat
caaaggcatgcgccatcacgcccagcaatagcccacatttctgaagttga
gtttgttttttccatgtctgagaacaatttcaatcgagaacagctcaagt
ccctgtccctttggagtcttgtaaagttgaaagttgacatttcaaagtcc
ccgagtacaagaggtagggcctcccaacccaactccagtaagattctgaa
caacagacacaattgctcatggatgtgtattttaattaaaaataattctg
tcaaaatacacagaatcttttcatctcaagtacaattactagatgttgtg
ttggattctgtcaaaccctctcacaccacaagttcatgctaatgcgaatt
caacttgcaaggacaaggcagacaggtggccactgtggaggatgccagtt
cagctgta
gaattctcttcaatgacgcaatagaaaggtgcattacaagtacaggtaca
gctcagtggaagacaacttgcctaatctgtgccagccctcagtgccacag
aaaggagagcaaaactatgtaaatcaacattgatactatataccagaatc
gctatctgtgatatagtgtagaatacgcctaagtgtatgtatctattatg
catgagagattttattcattgattcttttacttactgagagggtctcata
cagcccgtgctgaccttgaacttgctatgtaggtaaagatgactttgaac
tcctgttcctccagcctctacttcaaagttccgagatcacagacctgtat
ctctacgttcagtcctttgtggtgctagggactgaacccagggcttcctg
aatgccaggcaagcactccatccactgactgagctttatctccagctctc
cttctctttagatatgattttttttctttttcttttatttattatttatt
atatgtaagtacactgtagctgtcttcagacactccagaagagggagtca
gatctcgtttacagatggttgtgagccaccatgtggttgctgggatttga
actccggaccttcggaagagcagtcgggtgctcttacctgctgagccatc
tcaccaagccctttttttcttattattacaagagattaagatcaaaaggc
ttcacatattcaaggcagtgctcaacactgagttatatctcagcaccatt
ttggcaatggtgtttaaaatttcttagccaggtggtagtggtgcacgcct
gtaatcccaggactaggggaggtagaggtggtagatcctctgacttccag
gccagcatggtttcagctctgtagttcatgacagccaggactacccagag
gaaacaaactattcattcatatattaatatagtatatggtgacacatatg
gtgcacagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_108291241_108292415
seq2: B6Ng01-332G19.b_46_1203

seq1  GAATTCACTCTGTAGACCAGGCTGGCATGTGCCACCACTGTCCAGCATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGACCAGGCTGGCATGTGCCACCACTGTCCAGCATGC  50

seq1  TTTAAATATTTAATGACAAAGTTTTCCCTTCCCTTCTCTCCCTCCAGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATATTTAATGACAAAGTTTTCCCTTCCCTTCTCTCCCTCCAGTTT  100

seq1  TCTCCATGCACCCATTCTGTCAGTGTCATTCCTGAGGTCGGCATCAGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATGCACCCATTCTGTCAGTGTCATTCCTGAGGTCGGCATCAGTGG  150

seq1  CCTGTTTCCTGAGGGTGTGTGTAGATAGACCACCTGCTCAGTCCATGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTCCTGAGGGTGTGTGTAGATAGACCACCTGCTCAGTCCATGTTA  200

seq1  CCTTTATGTGTAGGATTCAGGGCTTGTCACTTAGGTAACAAATGTAGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATGTGTAGGATTCAGGGCTTGTCACTTAGGTAACAAATGTAGGGC  250

seq1  CTCTTCTCTGAGGAAAACTATTTCTTCTGCTCTCAGCACTCCTCAGTTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTCTGAGGAAAACTATTTCTTCTGCTCTCAGCACTCCTCAGTTGC  300

seq1  CAGTCAAAGGCTGAGGCTTCATGAGAGCGCCCACTTCAATTGGTGATTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAAAGGCTGAGGCTTCATGAGAGCGCCCACTTCAATTGGTGATTCA  350

seq1  GGTCCAGTTTACGCAGCCACGCTGAAGAGACTTCATGGATCTAACTGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCAGTTTACGCAGCCACGCTGAAGAGACTTCATGGATCTAACTGCTG  400

seq1  ACATTTCTAGATGAAATCTCACAGCAAACTTCCTGTTCCTCTGGCCCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCTAGATGAAATCTCACAGCAAACTTCCTGTTCCTCTGGCCCTTA  450

seq1  CAATTTTCCTGCCCCTTCTTCCACTATGACCCTAGATAGAGCCTTAGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTCCTGCCCCTTCTTCCACTATGACCCTAGATAGAGCCTTAGGTG  500

seq1  GCAGATTTGTGGCATCCATCAGTTGAGACTGAGCCCTATTTCATCTTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATTTGTGGCATCCATCAGTTGAGACTGAGCCCTATTTCATCTTTGA  550

seq1  AGGAAAAGAAGACACAATTGATAGCCCACATTTCTTTTTTTGTTTTGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAGAAGACACAATTGATAGCCCACATTTCTTTTTTTGTTTTGTTT  600

seq1  TTTGTTTTTTTTTTTTTGTTTTTTTTTTTTGTTTTTGTTTTTGAGACAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTTTTTTTTTGTTTTTTTTTTTTGTTTTTGTTTTTGAGACAGG  650

seq1  GTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGC  700

seq1  TGGCCTCGAACTCAGAAATACGCCTGCCTCTGCCTCCCGAGTGCTGGGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTCGAACTCAGAAATACGCCTGCCTCTGCCTCCCGAGTGCTGGGAT  750

seq1  CAAAGGCATGCGCCATCACGCCCAGCAATAGCCCACATTTCTGAAGTTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGCATGCGCCATCACGCCCAGCAATAGCCCACATTTCTGAAGTTGA  800

seq1  GTTTGTTTTTTCCATGTCTGAGAACAATTTCAATCGAGAACAGCTCAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTTTTCCATGTCTGAGAACAATTTCAATCGAGAACAGCTCAAGT  850

seq1  CCCTGTCCCTTTTGGAGTCTTGTAAAGTTGAAAGTTGACATTTCAAAAGT  900
      ||||||||| |||||||||||||||||||||||||||||||||| |||||
seq2  CCCTGTCCC-TTTGGAGTCTTGTAAAGTTGAAAGTTGACATTTC-AAAGT  898

seq1  CCCCGAGGTACCAAGAGGTAGGGCCTCCCAACCCCAACTCCAGTAAGATT  950
      |||||| ||| |||||||||||||||||||| ||||||||||||||||||
seq2  CCCCGA-GTA-CAAGAGGTAGGGCCTCCCAA-CCCAACTCCAGTAAGATT  945

seq1  CTGAACAACAGACACAATTGCTCATGGATGTGTATTTTAA-TAAAAATAA  999
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTGAACAACAGACACAATTGCTCATGGATGTGTATTTTAATTAAAAATAA  995

seq1  TTCTGTCAAAATACAACAGGAATCTTTTCATCTCAAGTACAATTTACTAG  1049
      |||||||||||||| ||| ||||||||||||||||||||||| |||||| 
seq2  TTCTGTCAAAATAC-ACA-GAATCTTTTCATCTCAAGTACAA-TTACTA-  1041

seq1  GATGTTTGTGTTGGAATTCTGTC-AACCCTCTCACACCACAAGTTTCATG  1098
      |||| ||||||||| |||||||| ||||||||||||||||||| ||||||
seq2  GATG-TTGTGTTGG-ATTCTGTCAAACCCTCTCACACCACAAG-TTCATG  1088

seq1  CTAATGCCGAATATCAACTTGCAAGGACAAAGGCAGAGCCAGTGTGCACA  1148
      |||||| ||||| ||||||||||||||| ||||||||  ||| |||  ||
seq2  CTAATG-CGAAT-TCAACTTGCAAGGAC-AAGGCAGA--CAG-GTGGCCA  1132

seq1  CTGTGGAGGATGCCAGTTTCAGCTGTA  1175
      |||||||||||||||| ||||||||||
seq2  CTGTGGAGGATGCCAG-TTCAGCTGTA  1158

seq1: chr8_108428671_108429628
seq2: B6Ng01-332G19.g_67_1026 (reverse)

seq1  GTCTGTGCCACCATATGTGTCA-CATATATTTATATTTATATATGAATG-  48
      ||||||| |||||||||||||| ||||||  |||||| ||||||||||| 
seq2  GTCTGTG-CACCATATGTGTCACCATATA-CTATATTAATATATGAATGA  48

seq1  ATAGGTTTTGTTT-CTCTGTGTAGTCCTGGCTGTCCTGAACTACAGAGCC  97
      ||||  ||||||| ||||| ||||||||||||||| ||||||||||||| 
seq2  ATAG--TTTGTTTCCTCTGGGTAGTCCTGGCTGTCATGAACTACAGAGCT  96

seq1  TGAACCATGCTGGCCTCGAAGTCAGA-GATCTACCACCTCTACCT-CCCT  145
        |||||||||||||| ||||||||| |||||||||||||||||| ||||
seq2  GAAACCATGCTGGCCTGGAAGTCAGAGGATCTACCACCTCTACCTCCCCT  146

seq1  AGTCCTGGGATTACAGGCGTGCACCACTACCACCTGGCTAAGAAATTTTA  195
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGTCCTGGGATTACAGGCGTGCACCACTACCACCTGGCTAAGAAATTTT-  195

seq1  AAACACCATTGCCAAAATGGTGCTGAGATATAACTCAGTGTTGAGCACCT  245
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAACACCATTGCCAAAATGGTGCTGAGATATAACTCAGTGTTGAGCA-CT  244

seq1  GCCTTGAATATGTGAAGCCTTTTGATC-TAATCTCTTGTAATAATAAGAA  294
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GCCTTGAATATGTGAAGCCTTTTGATCTTAATCTCTTGTAATAATAAGAA  294

seq1  AAAAAGGGC-TGGTGAGATGGCTCAGCAGGTAAGAGCACCCGACTGCTCT  343
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGGCTTGGTGAGATGGCTCAGCAGGTAAGAGCACCCGACTGCTCT  344

seq1  TCCGAAGGTCCGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGAAGGTCCGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACC  394

seq1  ATCTGT-AACGAGATCTGACTCCCTCTTCTGGAGTGTCTGAAGACAGCTA  442
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTAAACGAGATCTGACTCCCTCTTCTGGAGTGTCTGAAGACAGCTA  444

seq1  CAGTGTACTTACATATAATAAATAATAAATAAAAGAAAAAGAAAAAAAAT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTACTTACATATAATAAATAATAAATAAAAGAAAAAGAAAAAAAAT  494

seq1  CATATCTAAAGAGAAGGAGAGCTGGAGATAAAGCTCAGTCAGTGGATGGA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCTAAAGAGAAGGAGAGCTGGAGATAAAGCTCAGTCAGTGGATGGA  544

seq1  GTGCTTGCCTGGCATTCAGGAAGCCCTGGGTTCAGTCCCTAGCACCACAA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTGCCTGGCATTCAGGAAGCCCTGGGTTCAGTCCCTAGCACCACAA  594

seq1  AGGACTGAACGTAGAGATACAGGTCTGTGATCTCGGAACTTTGAAGTAGA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTGAACGTAGAGATACAGGTCTGTGATCTCGGAACTTTGAAGTAGA  644

seq1  GGCTGGAGGAACAGGAGTTCAAAGTCATCTTTACCTACATAGCAAGTTCA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGAGGAACAGGAGTTCAAAGTCATCTTTACCTACATAGCAAGTTCA  694

seq1  AGGTCAGCACGGGCTGTATGAGACCCTCTCAGTAAGTAAAAGAATCAATG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAGCACGGGCTGTATGAGACCCTCTCAGTAAGTAAAAGAATCAATG  744

seq1  AATAAAATCTCTCATGCATAATAGATACATACACTTAGGCGTATTCTACA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATCTCTCATGCATAATAGATACATACACTTAGGCGTATTCTACA  794

seq1  CTATATCACAGATAGCGATTCTGGTATATAGTATCAATGTTGATTTACAT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATCACAGATAGCGATTCTGGTATATAGTATCAATGTTGATTTACAT  844

seq1  AGTTTTGCTCTCCTTTCTGTGGCACTGAGGGCTGGCACAGATTAGGCAAG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGCTCTCCTTTCTGTGGCACTGAGGGCTGGCACAGATTAGGCAAG  894

seq1  TTGTCTTCCACTGAGCTGTACCTGTACTTGTAATGCACCTTTCTATTGCG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTCCACTGAGCTGTACCTGTACTTGTAATGCACCTTTCTATTGCG  944

seq1  TCATTGAAGAGAATTC  958
      ||||||||||||||||
seq2  TCATTGAAGAGAATTC  960