BAC Information

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BAC

Clone NameB6Ng01-333D21
Chromosome8 (Build37)
Map Location 86,774,535 - 86,931,291
singlet/doubletdoublet
Overlap gene2410018C20Rik, Ccdc130
Upstream geneTbc1d9, Ucp1, Elmod2, 4933434I20Rik, Clgn, Scoc, LOC546077, LOC675854, Olfr370, Ndufb7, Gpsn2, Dnajb1, Gipc1, Ptger1, Pkn1, Ddx39, Cd97, EG384857, Lphn1, Asf1b, Prkaca, Samd1, 1700067K01Rik, 2210011C24Rik, 4432412L15Rik, Il27ra, Rln3, C330011M18Rik, Rfx1, BC057552, LOC100039920, Podnl1, Cc2d1a, 4930432K21Rik, Nanos3, Zswim4, D8Ertd738e
Downstream geneCacna1a, Ier2, LOC100039975, Btbd14b, Trmt1, LOC100039997, Lyl1, Nfix, Dand5, Gadd45gip1, Rad23a, Calr, LOC546080, Farsa, Syce2, Gcdh, Klf1, Dnase2a, Mast1, Rtbdn, Rnaseh2a, LOC666841, Prdx2, Junb, Hook2, Best2, Asna1, 2310036O22Rik, Tnpo2, Fbxw9, EG436049, Dhps, 1500041N16Rik, BC056474, Man2b1, EG244556, EG624855, Olfr371, Vps35, Orc6l, D830007F02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333D21.bB6Ng01-333D21.g
ACCGA119110GA119111
length511435
definitionB6Ng01-333D21.b B6Ng01-333D21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,930,777 - 86,931,291)(86,774,535 - 86,774,975)
sequence
tttcgtgctatttgtacaactttttggattttctgaactttaaggaaaag
agaaaatgcaaacagttagcaagagaaagctgtgtgtgcacacggctcgt
tctgtgtgcatatgtctcgttgccttcctgggcacctgctgcgtgcccag
tcattttgcagccacagtccaagatggtgtgtccgagctgaatggtgaca
gaatgagggataaataaacagaatgagggaacatgcagtgtgtaggaagg
cactacctgtgcagtaataaagaggaacctgcacagagctttggggactc
ggaatgatcagttgcatgggggattgtcacacagactggcaaccctcttc
cttgtcactgtgccccatcatcctcttatcaacttcacattgtaaattaa
cttcatacttttaactgcttgaaattaccagtgttaaatatcatgttccc
tgtcactattgtatttaaactgatctttaactttttcattaaatttatgt
gtgtgtattat
caggttctttgactctcaagaataaagcaaagcaggttgtaggggctcac
atttttgaccttttgctcaagaggcagaggtaggtggatctttgtgagtt
ctagggtagcctggtccatagagcaagtccaagggcagccggagctacaa
agagactgccttaaaacacaaatatttatcttgattactgaactttggtg
tcttcttttataggacttgttctagcacagaggtttagttcctgggtccc
agctcccatatggcagctcacaaccacttgtaattccagttccaggagat
ctggtacccttttctggtctgggagagcaccaggggtttgcatgtaaaac
actcacacataaataaaagtaaatagccagtagtggtgcttgcatttaat
cccaacatttgggttacagaggcatgatgatctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_86930777_86931291
seq2: B6Ng01-333D21.b_46_562 (reverse)

seq1  ATAATACACACACATAAATTTAATGAAAAAGTTAAAGATCAGTTTAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATACACACACATAAATTTAATGAAAAAGTTAAAGATCAGTTTAAATA  50

seq1  CAATAGTGACAGGGAACATGATATTTAACACTGGTAATTTCAAGCAGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGTGACAGGGAACATGATATTTAACACTGGTAATTTCAAGCAGTTA  100

seq1  AAAGTATGAAGTTAATTTACAATGTGAAGATGATAAGAGGATGATGGGGC  150
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AAAGTATGAAGTTAATTTACAATGTGAAGTTGATAAGAGGATGATGGGGC  150

seq1  ACAGTGACAAGGAAGAGGGTTGCCAGTCTGTGTGACAATCCCCCATGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGACAAGGAAGAGGGTTGCCAGTCTGTGTGACAATCCCCCATGCAA  200

seq1  CTGCTCATTCCGAGTCCCCAAAGCTCTGTGCTGGTTCCTCTTTATTACTG  250
      ||| ||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTGATCATTCCGAGTCCCCAAAGCTCTGTGCAGGTTCCTCTTTATTACTG  250

seq1  CACAGGTAGTGCCTTCCTACACACTGCATGTTCCCTCATTCTGTTTATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGTAGTGCCTTCCTACACACTGCATGTTCCCTCATTCTGTTTATTT  300

seq1  ATCCCTCATTCTGTCACCATTCAGCTCGGACACACCATCTTGGACTGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTCATTCTGTCACCATTCAGCTCGGACACACCATCTTGGACTGTGG  350

seq1  CTGCAAAATGACTGGGCACGCAGCAGGTGCCCAGGAAGGCAACGAGACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAAATGACTGGGCACGCAGCAGGTGCCCAGGAAGGCAACGAGACAT  400

seq1  ATGCACACAGAACGAGCCGTGTGCACACACAGCTTTCTCTTGCTAACTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACACAGAACGAGCCGTGTGCACACACAGCTTTCTCTTGCTAACTGT  450

seq1  TTGCATTTTCTCTTTTCCTTAAAGTTCAG-ACCTCCAAAAAGTTGTACAA  499
      ||||||||||||||||||||||||||||| |  |||||||||||||||||
seq2  TTGCATTTTCTCTTTTCCTTAAAGTTCAGAAAATCCAAAAAGTTGTACAA  500

seq1  ATAGCACG-AAGAATTC  515
      |||||||| ||||||||
seq2  ATAGCACGAAAGAATTC  517

seq1: chr8_86774535_86774975
seq2: B6Ng01-333D21.g_69_509

seq1  GAATTCCAGGTTCACAGACTCTCAAGAATAAAGCAAAGCAGGTTGTAGGG  50
      |||||||||||||   ||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTTCTTTGACTCTCAAGAATAAAGCAAAGCAGGTTGTAGGG  50

seq1  GCTCACACTTTTGACCTTTTGCTCAAGAGGCAGAGGTAGGTGGATCTTTG  100
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACATTTTTGACCTTTTGCTCAAGAGGCAGAGGTAGGTGGATCTTTG  100

seq1  TGAGTTCTAGGGTAGCCTGGTCCATAGAGCAAGTCCAAGGGCAGCCAGAG  150
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGAGTTCTAGGGTAGCCTGGTCCATAGAGCAAGTCCAAGGGCAGCCGGAG  150

seq1  CTACAAAGAGACTGCCTTAAAACACAAATATTTATCTTGATTACTGAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAAGAGACTGCCTTAAAACACAAATATTTATCTTGATTACTGAACT  200

seq1  TTGGTGTCTTCTTTTATAGGACTTGTTCTAGCACAGAGGTTTAGTTCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGTCTTCTTTTATAGGACTTGTTCTAGCACAGAGGTTTAGTTCCTG  250

seq1  GGTCCCAGCTCCCATATGGCAGCTCACAACCACTTGTAATTCCAGTTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCAGCTCCCATATGGCAGCTCACAACCACTTGTAATTCCAGTTCCA  300

seq1  GGAGATCTGGTACCCTTTTCTGGTCTGGGAGAGCACCAGGGGTTTGCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATCTGGTACCCTTTTCTGGTCTGGGAGAGCACCAGGGGTTTGCATG  350

seq1  TAAAACACTCACACATAAATAAAAGTAAATAGCCAGTAGTGGTGCATGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TAAAACACTCACACATAAATAAAAGTAAATAGCCAGTAGTGGTGCTTGCA  400

seq1  TTTAATCCCAGCACTTGGGAGACAGAGGCAGGAGGATCTCT  441
      |||||||||| || |||||  ||||||||| || |||||||
seq2  TTTAATCCCAACATTTGGGTTACAGAGGCATGATGATCTCT  441