BAC Information

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BAC

Clone NameB6Ng01-334D23
Chromosome11 (Build37)8 (Build37)
Map Location 89,886,650 - 89,886,87285,459,382 - 85,460,564
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneDgke, A930013B10Rik, Gm525, LOC100039114, Nog, LOC100039047, 4932411E22Rik, Ankfn1, Pctp
Downstream geneTmem100, LOC100039104, Mmd, Hlf, Stxbp4, LOC100039267, Cox11, Tom1l1, LOC638903
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-334D23.bB6Ng01-334D23.g
ACCGA119798GA119799
length4291,172
definitionB6Ng01-334D23.b B6Ng01-334D23.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(89,886,650 - 89,886,872)(85,459,382 - 85,460,564)
sequence
caccggaagaccaacagagtcaactaacctagactcttgggggctctcag
aaactgaaccatgaaccaaagaacatatgcgagctagacccaggcctccc
tgcacaaatgtagcagatgtgcagcttggtcttcatctgggtcctgaacg
ctgggagcaggggctttccctaaagctgttgcctgcccatgagatatgtt
tttctaattgagcttccttgtctggcctcaatggggaggatatgcctagc
ctcaccgagatttgatgtgccaaggtggggaaataccctagggggaccta
cctgatcagaggagaaagggaaggggggagggggaaagtatcttggaagg
atgtgacctctctgtggtcagtgaacagaatataacgtgataagtaaaaa
aataaattaatttaaaaaaaggaaaaggg
gaattctatttgtctgaagcaatttcattctttaagtaagtacatctcat
attttatgcaagacttaaatctccaggtgtgactttttccagcacacacc
taagcaaagcaaacacaacttaaagtgagtattactgactgttactctca
cagtaacatgtgaggtgctaatgacaacctctggaaaatggccaatcaat
acatatggtctatgtctccatgcaactgaataatctttagaaatctctga
actattttcactataataatattggtagatcttctagtattttatgtttg
gaagcactgctgtgaattgaacttaaaatgtttacttgtatatgttaact
acaatccattaattatattgcatgtgatatattacttatataatatgcat
atataaataacatatactccattaattgtattgcatgcatatatattagg
tatgtgttacaatgtttctcttgtgctttgttgctgttgatagatgattt
cattgagtgttgaagaagcctagcacgcctgccatgagtctcactggcat
tatggccttatttattagaaagtatgtgtttactttttattgatgatgcc
atagtttcaaattattacaatttcatgtaggaaaacatttttctgtctgg
tttagaatgctctgggccttgtgagcacatgattttttgtcttcccgagt
aaggctttatgacttagatgattcttgctgcgcctctaccttctctctgt
gttctccagttcccccacccccacctctcgcctttctctcctgctcttgg
actcctcattcacttcgttgacttcagagttcgcaatctgcattccattt
ccatcttagccctgttacattacctaacgaaaatattcctggatgtgtac
ttacaacactcaacactgtaagtgaattcttagttgaatagctccctaac
caaggtttaatcttgacccacaggcaactgcatccagattttttaatgta
ggctttgcatagagtgcttgaatacttttgttagtaaatgaatgtttcta
tacggccacaattactaaacaggtattatggtaaatattttgggaatatg
atgcaaactaacattaaaatgtaaaaactcaacggacacatgctgctggt
gtatgttaggagaccacgtgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_89886650_89886872
seq2: B6Ng01-334D23.b_261_478

seq1  GCTTCCTTGTCTGGTCTCAGTAAGAAAGGATGCACCTACCCTGGCAGAGA  50
      |||||||||||||| |||| |  |  |||||   |||| |||  | ||||
seq2  GCTTCCTTGTCTGGCCTCAAT-GGGGAGGATATGCCTAGCCTCACCGAGA  49

seq1  CTTGATGCGCCAGGGTGGGGGAATACCC-AGGGGAGTCCAGTGTCTCAGA  99
       |||||| |||| ||||||| ||||||| |||||   | |     |||||
seq2  TTTGATGTGCCAAGGTGGGGAAATACCCTAGGGGGACCTACCTGATCAGA  99

seq1  GGAGAAGGGGAAGGGGGATGGCGGGAGTGTCTCT-----GTGTGTG-TGT  143
      |||||| ||||||||||  || ||||  || |||     |  ||||   |
seq2  GGAGAAAGGGAAGGGGGGAGG-GGGAAAGTATCTTGGAAGGATGTGACCT  148

seq1  GGGGGGGGGGACGGACCAAGAGACAGCAGTGTTTAATGTAAATAAATTAA  193
          | ||  |  || ||  | | | | ||| |  | ||||| |||| ||
seq2  CTCTGTGGTCAGTGAACAGAATATAAC-GTGAT--AAGTAAAAAAATAAA  195

seq1  TTAATTTAAAAAAAGAAAGAAAGAAAAGGG  223
      |||||||||||||||       ||||||||
seq2  TTAATTTAAAAAAAG-------GAAAAGGG  218

seq1: chr8_85459382_85460564
seq2: B6Ng01-334D23.g_67_1238

seq1  GAATTCTATTTGTCTGAAGCAATTTCATTCTTTAAGTAAGTACATCTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTTGTCTGAAGCAATTTCATTCTTTAAGTAAGTACATCTCAT  50

seq1  ATTTTATGCAAGACTTAAATCTCCAGGTGTGACTTTTTCCAGCACACACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATGCAAGACTTAAATCTCCAGGTGTGACTTTTTCCAGCACACACC  100

seq1  TAAGCAAAGCAAACACAACTTAAAGTGAGTATTACTGACTGTTACTCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAAAGCAAACACAACTTAAAGTGAGTATTACTGACTGTTACTCTCA  150

seq1  CAGTAACATGTGAGGTGCTAATGACAACCTCTGGAAAATGGCCAATCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAACATGTGAGGTGCTAATGACAACCTCTGGAAAATGGCCAATCAAT  200

seq1  ACATATGGTCTATGTCTCCATGCAACTGAATAATCTTTAGAAATCTCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGGTCTATGTCTCCATGCAACTGAATAATCTTTAGAAATCTCTGA  250

seq1  ACTATTTTCACTATAATAATATTGGTAGATCTTCTAGTATTTTATGTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTTCACTATAATAATATTGGTAGATCTTCTAGTATTTTATGTTTG  300

seq1  GAAGCACTGCTGTGAATTGAACTTAAAATGTTTACTTGTATATGTTAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCACTGCTGTGAATTGAACTTAAAATGTTTACTTGTATATGTTAACT  350

seq1  ACAATCCATTAATTATATTGCATGTGATATATTACTTATATAATATGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCCATTAATTATATTGCATGTGATATATTACTTATATAATATGCAT  400

seq1  ATATAAATAACATATACTCCATTAATTGTATTGCATGCATATATATTAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAATAACATATACTCCATTAATTGTATTGCATGCATATATATTAGG  450

seq1  TATGTGTTACAATGTTTCTCTTGTGCTTTGTTGCTGTTGATAGATGATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTTACAATGTTTCTCTTGTGCTTTGTTGCTGTTGATAGATGATTT  500

seq1  CATTGAGTGTTGAAGAAGCCTAGCACGCCTGCCATGAGTCTCACTGGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAGTGTTGAAGAAGCCTAGCACGCCTGCCATGAGTCTCACTGGCAT  550

seq1  TATGGCCTTATTTATTAGAAAGTATGTGTTTACTTTTTATTGATGATGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCCTTATTTATTAGAAAGTATGTGTTTACTTTTTATTGATGATGCC  600

seq1  ATAGTTTCAAATTATTACAATTTCATGTAGGAAAACATTTTTCTGTCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTCAAATTATTACAATTTCATGTAGGAAAACATTTTTCTGTCTGG  650

seq1  TTTAGAATGCTCTGGGCCTTGTGAGCACATGATTTTTTGTCTTCCCGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAATGCTCTGGGCCTTGTGAGCACATGATTTTTTGTCTTCCCGAGT  700

seq1  AAGGCTTTATGACTTAGATGATTCTTGCTGCGCCTCTACCTTCTCTCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTTTATGACTTAGATGATTCTTGCTGCGCCTCTACCTTCTCTCTGT  750

seq1  GTTCTCCAGTTCCCCCACCCCCACCTCTCGCCTTTCTCTCCTGCTCTTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCCAGTTCCCCCACCCCCACCTCTCGCCTTTCTCTCCTGCTCTTGG  800

seq1  ACTCCTCATTCACTTCGTTGACTTCAGAGTTCGCAATCTGCATTCCATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTCATTCACTTCGTTGACTTCAGAGTTCGCAATCTGCATTCCATTT  850

seq1  CCATCTTAGCCCTGTTACATTACCTAACGAAAATATTCCTGGATGTGTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTAGCCCTGTTACATTACCTAACGAAAATATTCCTGGATGTGTAC  900

seq1  TTACAACACTCAACACTGTAAGTGAATTCTTAGTTTGAATAGCTCCCTAA  950
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTACAACACTCAACACTGTAAGTGAATTCTTAG-TTGAATAGCTCCCTAA  949

seq1  CCAAGGTTTAATCTTGACCCACAGGCAACTGCATCCAGATTTTTTAATGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGTTTAATCTTGACCCACAGGCAACTGCATCCAGATTTTTTAATGT  999

seq1  AGGCTTTGCATAGAAGGTGCTTGAATACTTTTTGTTAAGTAAATGAATGT  1050
      ||||||||||||||  |||||||||||| ||||||| |||||||||||||
seq2  AGGCTTTGCATAGA--GTGCTTGAATAC-TTTTGTT-AGTAAATGAATGT  1045

seq1  TTCTAATACGGCCACAATTACTAAACAGGTTAATATGGTAAATATTTT-G  1099
      |||| |||||||||||||||||||||||| || ||||||||||||||| |
seq2  TTCT-ATACGGCCACAATTACTAAACAGG-TATTATGGTAAATATTTTGG  1093

seq1  GATAATGATGCCAAAAATTAACATTAAAATGTAAAAACCTCAACCAGACA  1149
      ||  |||||||   ||| ||||||||||||||||||| ||||| | ||||
seq2  GAATATGATGC---AAACTAACATTAAAATGTAAAAA-CTCAA-CGGACA  1138

seq1  CATGCTGCTGGTGGTATTGTTAGGAG-CCAC-TGAG  1183
      |||||||||||| ||| ||||||||| |||| ||||
seq2  CATGCTGCTGGT-GTA-TGTTAGGAGACCACGTGAG  1172