BAC Information

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BAC

Clone NameB6Ng01-335M10
Chromosome8 (Build37)
Map Location 109,112,328 - 109,258,720
singlet/doubletdoublet
Overlap geneCdh1, Tmco7
Upstream gene2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90, 6030452D12Rik, Cdh3, LOC100042734
Downstream geneHas3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b, LOC100042791, Nfat5, Nqo1, Nob1, Wwp2, LOC100042812, Psmd7, LOC100041744, LOC668038
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335M10.bB6Ng01-335M10.g
ACCGA120893GA120894
length1,1581,017
definitionB6Ng01-335M10.b B6Ng01-335M10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,112,328 - 109,113,476)(109,257,711 - 109,258,720)
sequence
taaatcaaacaaagcaaaagcagagttgtttgtctctagacactccccca
acacacacacacacacacacacacacacacacacacacacacacacacac
acacacacagtgaatttccagcccttcccttggtatctgtgattctatct
agccagggtgaaactgactgtcaaggagctattttcattggctggcaaac
ttcaagagggcttgccctttgggaggggctttctctctcccctaggctgg
gtctgatattggcctgattcctccacacacacacaccccactctgagaag
ggaggcagtctctctctctctctctcttttttttttttttgtttgtttgt
ttgtttgcatggaggtgacacaggttgctgcagagcttttggccttaaca
gccgttctcagtcctgatcagtcatcactaagaccaaagttatttgtaca
atgggagagacctaccaccccttatcaggaggtctgactgactaactctc
taggctggagagggcctgctctctgtggacttggctcaggaaaagccctg
gccactgagtaatgtgcactgtggaaatgataatagttaatgtttactta
acatttcctgtctgctgtgtttacttagcttaccgcacctggggtgtttt
gtttgttttctgttttttgtttgtttgtttgtttttctctttgagacagg
gtctctctctctacagagattggctaccttagaattcactatttagttga
ggttggcctcagacttccagaaatccacccaggctctttctctgcctctt
gaggggctgggattaaaggcaaatgccacctcaccctgatccttagagct
actcaaccacattagctgcttaattatttttcttggaaaggatgaaagaa
ctgagagagtcagagagaggccctatttgtttgttttggtttgtttttca
gtgctaggtttgaacccatgacctagccttcgaggaaagcatgataccat
tgagctaatcctcagtcttctagtggagaggtttaattggctttggtcaa
aaggctgtgactaagaaggtggtgtgggtggtcgaatcattgcctgtcaa
tccagcatctcagccggcggacataggaggactgtgagtttgaagcaatc
ctacatat
gaattctcctttgccccagccactgcatttgacatttaccaaaggaggta
gaaactcaggctcacagaagaacctgcagctggttgtttatagcagctct
agtcatgaatctcgaagctcagaggtgactaagatgacctccataaggtg
agtgcataaacagacttgtcaagacagtgtcatttagtactgtcggtgcg
ctagcaagccatgaaaagacatggaggaatattagtgaggagaaataata
caaagtgagaggaagcaatctgcaaggatacaggtgagagagagagagag
agagagagagagagagagagagagagagagagtgtaagtgagtgagtaca
gggggcagatgtgagagtgaacctatttttaggatacaggaggatggcag
acatgtggaacctattaacagtacaagccccagagtgaaccctgatgtaa
gctgcagactgggagccacactgatgtggttatgtggattcctcagttac
aacaaagagcccagaatgtagctcagggtacacctagcaggtgaaagggt
tgagtccccaggagatacacacaaacacacacacacacacacacacacac
acacacacacgaggtaaagaattctaaaaagccgttactctttggtaaca
atggggaggctagggacatgagggcataggagatatctgagaaacgtctg
tatctgctcaattttgttgtgaccctaaaactactctaaaaaataaactc
tgtgcctgggagataactaggcaagtgaaagcacttgcctttgtaagtct
aattacaggtttagatccagaacccacttgctggaaatgtctgtgaccca
ggcactccttacagtgacacagggagggcagagacgggagcaatattaca
aagtcaaggaggcccagctgaaaggacctggacagggcagcctgcctggg
gtttttatagcacagcaccaagttgacaagagaattttttactttcataa
tcaagtcggcagagata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_109112328_109113476
seq2: B6Ng01-335M10.b_56_1213

seq1  TAAATCAAACAAAGCAAAAGCAGAGTTGTTTGTCTCTAGACACTCCCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCAAACAAAGCAAAAGCAGAGTTGTTTGTCTCTAGACACTCCCCCA  50

seq1  ACACACACACACACACACACACACACACACACACACACACACACACACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACACACACACACACAC  100

seq1  ACACACACAGTGAATTTCCAGCCCTTCCCTTGGTATCTGTGATTCTATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACAGTGAATTTCCAGCCCTTCCCTTGGTATCTGTGATTCTATCT  150

seq1  AGCCAGGGTGAAACTGACTGTCAAGGAGCTATTTTCATTGGCTGGCAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGGTGAAACTGACTGTCAAGGAGCTATTTTCATTGGCTGGCAAAC  200

seq1  TTCAAGAGGGCTTGCCCTTTGGGAGGGGCTTTCTCTCTCCCCTAGGCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGAGGGCTTGCCCTTTGGGAGGGGCTTTCTCTCTCCCCTAGGCTGG  250

seq1  GTCTGATATTGGCCTGATTCCTCCACACACACACACCCCACTCTGAGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGATATTGGCCTGATTCCTCCACACACACACACCCCACTCTGAGAAG  300

seq1  GGAGGCAGTCTCTCTCTCTCTCTCTCTTTTTTTTTTTTTTGTTTGTTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAGTCTCTCTCTCTCTCTCTCTTTTTTTTTTTTTTGTTTGTTTGT  350

seq1  TTGTTTGCATGGAGGTGACACAGGTTGCTGCAGAGCTTTTGGCCTTAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGCATGGAGGTGACACAGGTTGCTGCAGAGCTTTTGGCCTTAACA  400

seq1  GCCGTTCTCAGTCCTGATCAGTCATCACTAAGACCAAAGTTATTTGTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTTCTCAGTCCTGATCAGTCATCACTAAGACCAAAGTTATTTGTACA  450

seq1  ATGGGAGAGACCTACCACCCCTTATCAGGAGGTCTGACTGACTAACTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAGAGACCTACCACCCCTTATCAGGAGGTCTGACTGACTAACTCTC  500

seq1  TAGGCTGGAGAGGGCCTGCTCTCTGTGGACTTGGCTCAGGAAAAGCCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTGGAGAGGGCCTGCTCTCTGTGGACTTGGCTCAGGAAAAGCCCTG  550

seq1  GCCACTGAGTAATGTGCACTGTGGAAATGATAATAGTTAATGTTTACTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTGAGTAATGTGCACTGTGGAAATGATAATAGTTAATGTTTACTTA  600

seq1  ACATTTCCTGTCTGCTGTGTTTACTTAGCTTACCGCACCTGGGGTGTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCCTGTCTGCTGTGTTTACTTAGCTTACCGCACCTGGGGTGTTTT  650

seq1  GTTTGTTTTCTGTTTTTTGTTTGTTTGTTTGTTTTTCTCTTTGAGACAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTTCTGTTTTTTGTTTGTTTGTTTGTTTTTCTCTTTGAGACAGG  700

seq1  GTCTCTCTCTCTACAGAGATTGGCTACCTTAGAATTCACTATTTAGTTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCTCTCTACAGAGATTGGCTACCTTAGAATTCACTATTTAGTTGA  750

seq1  GGTTGGCCTCAGACTTCCAGAAATCCACCCAGGCTCTTTCTCTGCCTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGCCTCAGACTTCCAGAAATCCACCCAGGCTCTTTCTCTGCCTCTT  800

seq1  GA-GGGCTGGGATTAAAGGCAAATGCCACCTCA-CCTGATCCTTAGAGCT  848
      || |||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GAGGGGCTGGGATTAAAGGCAAATGCCACCTCACCCTGATCCTTAGAGCT  850

seq1  ACTCAACCACA-TAGCTGCTTAATTATTTTTCTTGG-AAGGATGAAAGAA  896
      ||||||||||| |||||||||||||||||||||||| |||||||||||||
seq2  ACTCAACCACATTAGCTGCTTAATTATTTTTCTTGGAAAGGATGAAAGAA  900

seq1  CTGAGAGAGTCCAGAGAGAGG-CCTATTTGTTTTGTTTTGTTTTGTTTTT  945
      |||||||||| |||||||||| |||||||| ||||||||| |||| ||||
seq2  CTGAGAGAGT-CAGAGAGAGGCCCTATTTG-TTTGTTTTGGTTTG-TTTT  947

seq1  TCAGTGCTAGGTTTGAACCCATGACCTTAGCCTTCGAGGAAAGCATGATA  995
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TCAGTGCTAGGTTTGAACCCATGACC-TAGCCTTCGAGGAAAGCATGATA  996

seq1  CCATTGAGCTAAATCCTCAGTC-TCTAGT-GAGA-GTTTAAATGGC-TTG  1041
      |||||||||| ||||||||||| |||||| |||| |||||| |||| |||
seq2  CCATTGAGCT-AATCCTCAGTCTTCTAGTGGAGAGGTTTAATTGGCTTTG  1045

seq1  TTCAAAAGCTTGTGACTAAGA----GGTGTGTGGTGTCAGATACATGCCT  1087
       |||||||  |||||||||||    |||||| |  |||  ||   |||||
seq2  GTCAAAAGGCTGTGACTAAGAAGGTGGTGTGGGTGGTCGAATCATTGCCT  1095

seq1  GTCATCCCAGCAT-TCAGCCGCCTGAGATAGGAGGACTGTGAATTTGAAG  1136
      ||||  ||||||| ||||||| | || ||||||||||||||| |||||||
seq2  GTCAATCCAGCATCTCAGCCGGCGGACATAGGAGGACTGTGAGTTTGAAG  1145

seq1  CCAATCTACATAT  1149
      | |  ||||||||
seq2  CAATCCTACATAT  1158

seq1: chr8_109257711_109258720
seq2: B6Ng01-335M10.g_66_1082 (reverse)

seq1  TATCTCCTGCCGACTTGATTTTG-AAGTAAGATA-TCTCTTGTC-ACTTG  47
      ||||| |||||||||||||| || |||||| | | ||||||||| |||||
seq2  TATCT-CTGCCGACTTGATTATGAAAGTAAAAAATTCTCTTGTCAACTTG  49

seq1  CTGCTGTGCTATATAAACCCCAGGCAGGCTGCCCTGTCAGGTTCCTTTCA  97
       |||||||||||| ||||||||||||||||||||||||  | ||||||||
seq2  GTGCTGTGCTATAAAAACCCCAGGCAGGCTGCCCTGTCCAGGTCCTTTCA  99

seq1  GCTGGGCCTCCTTGACTTTGTAATATTGCTCCCGTCTCTGCC--TCCTGT  145
      ||||||||||||||||||||||||||||||||||||||||||   |||||
seq2  GCTGGGCCTCCTTGACTTTGTAATATTGCTCCCGTCTCTGCCCTCCCTGT  149

seq1  GTCACTGT-AGGAGTG-CTGGGTCACAGACATTTCCAGC-AGTGGGTTCT  192
      |||||||| ||||||| |||||||||||||||||||||| ||||||||||
seq2  GTCACTGTAAGGAGTGCCTGGGTCACAGACATTTCCAGCAAGTGGGTTCT  199

seq1  GGATCTAAACCTGTAATTAGACTTAC-AAGGCAAGTGCTTTCACTTGCCT  241
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GGATCTAAACCTGTAATTAGACTTACAAAGGCAAGTGCTTTCACTTGCCT  249

seq1  AGTTATCTCCCAGGCACAGAGTTTATTTTTTTAGAGTAGTTTTAGGGTCA  291
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGTTATCTCCCAGGCACAGAGTTTA-TTTTTTAGAGTAGTTTTAGGGTCA  298

seq1  CAACAAAATTGAGCAGATACAGACGTTTCTCAGATATCTCCTATGCCCTC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAAATTGAGCAGATACAGACGTTTCTCAGATATCTCCTATGCCCTC  348

seq1  ATGTCCCTAGCCTCCCCATTGTTACCAAAGAGTAACGGCTTTTTAGAATT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCCTAGCCTCCCCATTGTTACCAAAGAGTAACGGCTTTTTAGAATT  398

seq1  CTTTACCTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACCTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTG  448

seq1  TGTATCTCCTGGGGACTCAACCCTTTCACCTGCTAGGTGTACCCTGAGCT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTCCTGGGGACTCAACCCTTTCACCTGCTAGGTGTACCCTGAGCT  498

seq1  ACATTCTGGGCTCTTTGTTGTAACTGAGGAATCCACATAACCACATCAGT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTGGGCTCTTTGTTGTAACTGAGGAATCCACATAACCACATCAGT  548

seq1  GTGGCTCCCAGTCTGCAGCTTACATCAGGGTTCACTCTGGGGCTTGTACT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTCCCAGTCTGCAGCTTACATCAGGGTTCACTCTGGGGCTTGTACT  598

seq1  GTTAATAGGTTCCACATGTCTGCCATCCTCCTGTATCCTAAAAATAGGTT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATAGGTTCCACATGTCTGCCATCCTCCTGTATCCTAAAAATAGGTT  648

seq1  CACTCTCACATCTGCCCCCTGTACTCACTCACTTACACTCTCTCTCTCTC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTCACATCTGCCCCCTGTACTCACTCACTTACACTCTCTCTCTCTC  698

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACCTGTATCCTTGCAG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACCTGTATCCTTGCAG  748

seq1  ATTGCTTCCTCTCACTTTGTATTATTTCTCCTCACTAATATTCCTCCATG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTCCTCTCACTTTGTATTATTTCTCCTCACTAATATTCCTCCATG  798

seq1  TCTTTTCATGGCTTGCTAGCGCACCGACAGTACTAAATGACACTGTCTTG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCATGGCTTGCTAGCGCACCGACAGTACTAAATGACACTGTCTTG  848

seq1  ACAAGTCTGTTTATGCACTCACCTTATGGAGGTCATCTTAGTCACCTCTG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTCTGTTTATGCACTCACCTTATGGAGGTCATCTTAGTCACCTCTG  898

seq1  AGCTTCGAGATTCATGACTAGAGCTGCTATAAACAACCAGCTGCAGGTTC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCGAGATTCATGACTAGAGCTGCTATAAACAACCAGCTGCAGGTTC  948

seq1  TTCTGTGAGCCTGAGTTTCTACCTCCTTTGGTAAATGTCAAATGCAGTGG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGAGCCTGAGTTTCTACCTCCTTTGGTAAATGTCAAATGCAGTGG  998

seq1  CTGGGGCAAAGGAGAATTC  1010
      |||||||||||||||||||
seq2  CTGGGGCAAAGGAGAATTC  1017