BAC Information

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BAC

Clone NameB6Ng01-336C16
Chromosome8 (Build37)
Map Location 39,489,818 - 39,490,979
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC621149, Sgcz
Downstream geneTusc3, LOC100038974, LOC632066, EG621335
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336C16.bB6Ng01-336C16.g
ACCGA121169GA121170
length1,1531,073
definitionB6Ng01-336C16.b B6Ng01-336C16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttgaaatacctttcatatttttgaatgttttttcgtacactact
tcatttaatgtcatgggagttctggtgaacaaagtaataaaaaagaacag
aaaatgggaattatgttgggttcagaatcattgagaaattgaatagcaca
atcttataatgtataaataggtagggaaaagtgataaaaatcaatgcaga
gatctacagtgacaccttggccacagtgatgcctttagtcaacacaggac
tgagttaatgctattctttagaaatatcttcatggtgtctttggtaaggg
taaattaccagcataaagagatgaataagacaagaatagtaaataacttg
gggactattgtgtgtgtaagggaattgagtcataactaactgaacaaaga
tggtgacagtgtaatgataaaagacagatggctttcaaaggaggtataga
actgttggaagtaaacaaccaatgtcttgctttgactttaggcctactcc
atgcgaagaaacccatacttaactgctggtttacccaagattcagtactt
ataggtagctcagagacctagggaacagccaaccactacctgccatgaaa
aatgtatcaatataatgatatttttctatgcttatagatctgtttatcca
gtcatcatcattgaggattcctcctgcagcagatggaaacagatacagag
acccaaagccagacatacagagagagagaaggttcaaatggaaagtctcc
attaaaatctttaatttatttttaatttatttttgggatagcattgaaaa
tgtaaacgaggaaaattcctaattaaaaaaaaaaagaaaaaaaaaagaaa
aaataggaaaaaaatcttaaccctcaaagctcaaggaatcctgtggagga
agagacagaaagattgcaagagccagagggcatgaatgttaccaggagaa
taaggccttctgaatcaactacccaaggcacatctaagtaggcttgcaga
gactgaagcagcaagcaggaccactaatgcgggtctgtaccagatctatg
tggtatatatatactctcagtatggcattttatggtgatgactgactata
aataagtgggtctctgactcctgtgcttgctctgacccttatcgtctgtg
ggg

gaattcatgtgcctatttaaaaataggacccatgaatgagacatggacta
ccttagtttaatgtgttactctacatttgtattaattttctgtcgcacaa
tataatctcagattttataccaaaacgcagctccactatgtttgtattcc
tgctattttctttatatagtcttaagtttactaatacctaggctagtttt
gtaatttttatattttgaatactgtttaataaagactggagtacagttat
ccctatattatgccatcatgggttcaattgggcacattcccaggaatctt
ctgtagctcttttttcctttttattttttctttttcttttttttttatga
ggaaccttcttactgatttccatagtgacaaggcaaatttacattgatta
gcaacatataaggacaccctctctttttagaatcttgccaacatttatta
tttgtttccacaatgacagtcgttctgactgtggtgaaagggaaagtcaa
tgcagttgcaatttgcatttccctgatgactaagtatatttgacactttt
ttacatatgcttattagccatttgtgcttcaacctttgaaaactgtttat
ttcatgtgtccctttattgattagattgtttggaaggatttttttttcat
agatctttgtatttctttactctaggtagtaagtttgtcctttcactcaa
tcttaattttttgttttttttttgtaattcagagtttttttttaattaga
tattttctttatttatatttcaaatgttatgccctttcctggtttcccct
ctgaaaacccctccccctgcccccacccccaactcagccactcccacttt
ccctacactgggcatcccacccttactggaccaagggcctctcctcccat
tgatgttcaacaaggccatcctctgctacatatggggctaggagccatgt
ccctcatgtgtactctttgttggcgtgtagtcctggagcctctggatgtc
tgcttacttcatatggtgtctcctatgcgtctgagaccactcactccttt
ggctactctttagatctcatgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_39489818_39490979
seq2: B6Ng01-336C16.b_47_1199

seq1  GAATTCTTGAAATACCTTTCATATTTTTGAATGTTTTTTCGTACACTACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAAATACCTTTCATATTTTTGAATGTTTTTTCGTACACTACT  50

seq1  TCATTTAATGTCATGGGAGTTCTGGTGAACAAAGTAATAAAAAAGAACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTAATGTCATGGGAGTTCTGGTGAACAAAGTAATAAAAAAGAACAG  100

seq1  AAAATGGGAATTATGTTGGGTTCAGAATCATTGAGAAATTGAATAGCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGGAATTATGTTGGGTTCAGAATCATTGAGAAATTGAATAGCACA  150

seq1  ATCTTATAATGTATAAATAGGTAGGGAAAAGTGATAAAAATCAATGCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTATAATGTATAAATAGGTAGGGAAAAGTGATAAAAATCAATGCAGA  200

seq1  GATCTACAGTGACACCTTGGCCACAGTGATGCCTTTAGTCAACACAGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTACAGTGACACCTTGGCCACAGTGATGCCTTTAGTCAACACAGGAC  250

seq1  TGAGTTAATGCTATTCTTTAGAAATATCTTCATGGTGTCTTTGGTAAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTAATGCTATTCTTTAGAAATATCTTCATGGTGTCTTTGGTAAGGG  300

seq1  TAAATTACCAGCATAAAGAGATGAATAAGACAAGAATAGTAAATAACTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTACCAGCATAAAGAGATGAATAAGACAAGAATAGTAAATAACTTG  350

seq1  GGGACTATTGTGTGTGTAAGGGAATTGAGTCATAACTAACTGAACAAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTATTGTGTGTGTAAGGGAATTGAGTCATAACTAACTGAACAAAGA  400

seq1  TGGTGACAGTGTAATGATAAAAGACAGATGGCTTTCAAAGGAGGTATAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGACAGTGTAATGATAAAAGACAGATGGCTTTCAAAGGAGGTATAGA  450

seq1  ACTGTTGGAAGTAAACAACCAATGTCTTGCTTTGACTTTAGGCCTACTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTGGAAGTAAACAACCAATGTCTTGCTTTGACTTTAGGCCTACTCC  500

seq1  ATGCGAAGAAACCCATACTTAACTGCTGGTTTACCCAAGATTCAGTACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGAAGAAACCCATACTTAACTGCTGGTTTACCCAAGATTCAGTACTT  550

seq1  ATAGGTAGCTCAGAGACCTAGGGAACAGCCAACCACTACCTGCCATGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTAGCTCAGAGACCTAGGGAACAGCCAACCACTACCTGCCATGAAA  600

seq1  AATGTATCAATATAATGATATTTTTCTATGCTTATAGATCTGTTTATCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATCAATATAATGATATTTTTCTATGCTTATAGATCTGTTTATCCA  650

seq1  GTCATCATCATTGAGGATTCCTCCTGCAGCAGATGGAAACAGATACAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCATCATTGAGGATTCCTCCTGCAGCAGATGGAAACAGATACAGAG  700

seq1  ACCCAAAGCCAGACATACAGAGAGAGAGAAGGTTCAAATGGAAAGTCTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAAGCCAGACATACAGAGAGAGAGAAGGTTCAAATGGAAAGTCTCC  750

seq1  ATTAAAATCTTTAATTTATTTTTAATTTATTTTTGGGATAGCATTGAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAATCTTTAATTTATTTTTAATTTATTTTTGGGATAGCATTGAAAA  800

seq1  TGTAAACGAGGAAAATTCCTAATTAAAAAAAAAAAGAAAAAAAAAAGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAACGAGGAAAATTCCTAATTAAAAAAAAAAAGAAAAAAAAAAGAAA  850

seq1  AAATAGGAAAAAAATCTTAACCCTCAAAGCTCAAGGAATCCTGTGGAGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGGAAAAAAATCTTAACCCTCAAAGCTCAAGGAATCCTGTGGAGGA  900

seq1  AGAGACAGAAAGATTGCAAGAGCCAGAGGGCATGAATGTTACCAGGAGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGAAAGATTGCAAGAGCCAGAGGGCATGAATGTTACCAGGAGAA  950

seq1  TAAGGCCTTCTGAATCAACTACCCAAGGCACATCTAAGTAGGCTTGCAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCCTTCTGAATCAACTACCCAAGGCACATCTAAGTAGGCTTGCAGA  1000

seq1  GACTGAAGCAGCAAGCAGGACCACTAATGCGGGTCTGTACCAGATCCTAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GACTGAAGCAGCAAGCAGGACCACTAATGCGGGTCTGTACCAGAT-CTAT  1049

seq1  GT-GTATATATTATACCTCTCAGTATTGGCATTTTTATGTGATGACTGAC  1099
      || ||||||| |||| ||||||||| |||||||||   ||||||||||||
seq2  GTGGTATATA-TATA-CTCTCAGTA-TGGCATTTTATGGTGATGACTGAC  1096

seq1  TATTAAATAAGTGGGTCTCTGACTCCTGTGCCTGCTCTTGGAACCCTTAT  1149
      || |||||||||||||||||||||||||||| ||||||    ||||||||
seq2  TA-TAAATAAGTGGGTCTCTGACTCCTGTGCTTGCTCT---GACCCTTAT  1142

seq1  CCTTCTGTTGGGG  1162
       | ||||| ||| 
seq2  -CGTCTGTGGGG-  1153


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