BAC Information

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BAC

Clone NameB6Ng01-336J08
Chromosome8 (Build37)
Map Location 17,262,550 - 17,281,446
singlet/doubletdoublet
Overlap geneCsmd1
Upstream genenone
Downstream geneLOC665638, LOC100040466
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336J08.bB6Ng01-336J08.g
ACCGA121463GA121464
length1,197929
definitionB6Ng01-336J08.b B6Ng01-336J08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,280,852 - 17,281,446)(17,262,550 - 17,263,479)
sequence
gaattctcgtctctttcaaagtagaatatgatcttttgtatcactacact
ttatccttctttacctattgtcttagggtttccatagctgtgaagggaca
cggtgactaaggcaactcttacaaggacaacaattaattggggctgactt
acaggttcagaggttcagtccctgatcatcaagtttgggagcatggtaat
gtctgtgcaggcactggagaaggggctgagagttctgcatcttgttctga
aggcaaacaggggaaggctgtcctttaggcatcctttaagcccatcccta
cagtgacatacttccttcaacatggccacacctactctaagaaagccaca
actcctaatattgccattccttgggccaaccatattcaagccaccttacc
cattcatccactgacagccactagtttgtttccataaatcattttctggg
attaaggctatagtgaacttggggtgcagatgtctctgtgaggtactgat
tttattcattatattctcaggagttactgttttgagtttacataaatact
gtatgtgtgtgtgtgtgtattttaaatgtccataacaattttgatttcca
ctaatggtgtaaaatgactctgatttctccaaagtcttgatccatacata
ttatctattatctttcattagtctcaattctaacaggtacaagatgctat
ctcattttcattctgatctccattcctctgatgattagccccaggagaaa
tctctaaaacaacttatgtattttgtggttttatgtttacatgagctgca
acagaaagattcatggtttggtcaatttactaatgctctgtttatccttg
attcttaccaggcagtaaaataaaaagagttatgctcatattattctaaa
cattcaacattccaactgtggaactatgagatacaatttatttcttcttt
gaacaatcaactgtaatatcaatctgggaacattttatgctaaaggagac
atgctttctatatttcagtggttcattgatagaggcaggttatagtgtta
taatgggacaatatgattagtgctgtccttcaggactatgactagcaagg
tttctacatatttcccaatggttagcacatctcatctaattccattatgt
atcatgaatctaaacaatgaacttcccatggggggttttggctttgg

gaattcaaggctctgtcagtctttctttctttaggactttaattaacaat
gatattaaaacaagcatattgttacatcagaatacctggaattaactatg
catttacttgtgtttatgggagttatgagtttctagccaatagtgcataa
cttttaaaaatggttaaagatacaaacttaatcttttatacttatagttc
taaaatgtgcttttaaaatatgcgctctcaggaaaagtatgctcacttgg
aaatctgaaaataacctggtactatctgtatttccaagcatcagatttca
tgactgtttttgttgttgttatgtttgttttctttttttatgtagctgtc
tactgtttgtgctggattatatcacctcaacttaaagcaaattctagaag
gaaaattacttccactgaaagagatatgacctcctttacaaaactcagca
gtgaaagcaagacctggcacagtgtagggaggctgttctgtatcacaggc
tgttgtgctaatatgaaaggaacaacagaggctgtgtgcctagcacaggc
ttctgaaagcctttaccaaatgcactttgctatccagccttttctatgtt
tccactgatgatctaccagttaagagaagtcatgaaaaagtgaaatttgc
ctgctactagaatgttgtggggaagaaaaattgtcctttttcatgtaccc
actggtgagagcatcaagtcccaaaggacaatttcaaatcagtcattacc
cagatcatcctggtcacactcagtggaccacaaacccaaacaaaagaaat
ggatttggtagagggatgcacaggagagggctgttacaggatagcaggac
agagataaaagatggtaagtgagaaaatgtatcaaatgtattttatatat
atatatatatatgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_17280852_17281446
seq2: B6Ng01-336J08.b_651_1243 (reverse)

seq1  CCAAAAC--AAAACACCCATGGAAGGCTCATTGTTTTAATATCATGATAC  48
      ||||| |  ||| | ||||||| | | |||||||||  || |||||||||
seq2  CCAAAGCCAAAACCCCCCATGGGAAGTTCATTGTTTAGAT-TCATGATAC  49

seq1  ATTAATGGATTTAGATTGAGATGTGGCTACCATT-GGAAATATGTAGAAA  97
      | ||||||| ||||| |||||||||   |||||| |||||||||||||||
seq2  A-TAATGGAATTAGA-TGAGATGTGCTAACCATTGGGAAATATGTAGAAA  97

seq1  CCTTTGCTAGTCATAGTCCTTGAAGGACAGCACTAATCATATTGTCCCAT  147
      || |||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CC-TTGCTAGTCATAGTCC-TGAAGGACAGCACTAATCATATTGTCCCAT  145

seq1  TATTAACACTATAACCTGCCTCTATCAATGAACCACTGAAATATAGAAAG  197
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TA-TAACACTATAACCTGCCTCTATCAATGAACCACTGAAATATAGAAAG  194

seq1  CATGTCTCCTTTAGCAT-AAATGTT-CCAGATTGATATTACAGTTGATTT  245
      ||||||||||||||||| ||||||| ||||||||||||||||||||| ||
seq2  CATGTCTCCTTTAGCATAAAATGTTCCCAGATTGATATTACAGTTGA-TT  243

seq1  GTTCAAAGAAGAAATAAATTGTATCTCATAGTTCCACAGTTGGAATGTTG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAAGAAGAAATAAATTGTATCTCATAGTTCCACAGTTGGAATGTTG  293

seq1  AATGTTTAGAATAATATGAGCATAACTCTTTTTATTTTACTGCCTGGTAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTAGAATAATATGAGCATAACTCTTTTTATTTTACTGCCTGGTAA  343

seq1  GAATCAAGGATAAACAGAGCATTAGTAAATTGACCAAACCATGAATCTTT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAAGGATAAACAGAGCATTAGTAAATTGACCAAACCATGAATCTTT  393

seq1  CTGTTGCAGCTCATGTAAACATAAAACCACAAAATACATAAGTTGTTTTA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGCAGCTCATGTAAACATAAAACCACAAAATACATAAGTTGTTTTA  443

seq1  GAGATTTCTCCTGGGGCTAATCATCAGAGGAATGGAGATCAGAATGAAAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTTCTCCTGGGGCTAATCATCAGAGGAATGGAGATCAGAATGAAAA  493

seq1  TGAGATAGCATCTTGTACCTGTTAGAATTGAGACTAATGAAAGATAATAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATAGCATCTTGTACCTGTTAGAATTGAGACTAATGAAAGATAATAG  543

seq1  ATAATATGTATGGATCAAGACTTTGGAGAAATCAGAGTCATTTTACACCA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATGTATGGATCAAGACTTTGGAGAAATCAGAGTCATTTTACACCA  593


seq1: chr8_17262550_17263479
seq2: B6Ng01-336J08.g_65_993

seq1  GAATTCAAGGCTCTGTCAGTCTTTCTTTCTTTAGGACTTTAATTAACAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCTCTGTCAGTCTTTCTTTCTTTAGGACTTTAATTAACAAT  50

seq1  GATATTAAAACAAGCATATTGTTACATCAGAATACCTGGAATTAACTATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTAAAACAAGCATATTGTTACATCAGAATACCTGGAATTAACTATG  100

seq1  CATTTACTTGTGTTTATGGGAGTTATGAGTTTCTAGCCAATAGTGCATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACTTGTGTTTATGGGAGTTATGAGTTTCTAGCCAATAGTGCATAA  150

seq1  CTTTTAAAAATGGTTAAAGATACAAACTTAATCTTTTATACTTATAGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAAAATGGTTAAAGATACAAACTTAATCTTTTATACTTATAGTTC  200

seq1  TAAAATGTGCTTTTAAAATATGCGCTCTCAGGAAAAGTATGCTCACTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGTGCTTTTAAAATATGCGCTCTCAGGAAAAGTATGCTCACTTGG  250

seq1  AAATCTGAAAATAACCTGGTACTATCTGTATTTCCAAGCATCAGATTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGAAAATAACCTGGTACTATCTGTATTTCCAAGCATCAGATTTCA  300

seq1  TGACTGTTTTTGTTGTTGTTATGTTTGTTTTCTTTTTTTATGTAGCTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTTTTTGTTGTTGTTATGTTTGTTTTCTTTTTTTATGTAGCTGTC  350

seq1  TACTGTTTGTGCTGGATTATATCACCTCAACTTAAAGCAAATTCTAGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTTTGTGCTGGATTATATCACCTCAACTTAAAGCAAATTCTAGAAG  400

seq1  GAAAATTACTTCCACTGAAAGAGATATGACCTCCTTTACAAAACTCAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTACTTCCACTGAAAGAGATATGACCTCCTTTACAAAACTCAGCA  450

seq1  GTGAAAGCAAGACCTGGCACAGTGTAGGGAGGCTGTTCTGTATCACAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGCAAGACCTGGCACAGTGTAGGGAGGCTGTTCTGTATCACAGGC  500

seq1  TGTTGTGCTAATATGAAAGGAACAACAGAGGCTGTGTGCCTAGCACAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGCTAATATGAAAGGAACAACAGAGGCTGTGTGCCTAGCACAGGC  550

seq1  TTCTGAAAGCCTTTACCAAATGCACTTTGCTATCCAGCCTTTTCTATGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAAGCCTTTACCAAATGCACTTTGCTATCCAGCCTTTTCTATGTT  600

seq1  TCCACTGATGATCTACCAGTTAAGAGAAGTCATGAAAAAGTGAAATTTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTGATGATCTACCAGTTAAGAGAAGTCATGAAAAAGTGAAATTTGC  650

seq1  CTGCTACTAGAATGTTGTGGGGAAGAAAAATTGTCCTTTTTCATGTACCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTACTAGAATGTTGTGGGGAAGAAAAATTGTCCTTTTTCATGTACCC  700

seq1  ACTGGTGAGAGCATCAAGTCCCAAAGGACAATTTCAAATCAGTCATTACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTGAGAGCATCAAGTCCCAAAGGACAATTTCAAATCAGTCATTACC  750

seq1  CAGATCATCCTGGTCACACTCAGTGGACCACAAACCCAAACAAAAGAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCATCCTGGTCACACTCAGTGGACCACAAACCCAAACAAAAGAAAT  800

seq1  GGATTTGGTAGAGGGATGCACAGGAGAGGGCTGTTACAGGATAGCAGGGA  850
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GGATTTGGTAGAGGGATGCACAGGAGAGGGCTGTTACAGGATAGCA-GGA  849

seq1  CAGAGATAAAAGATGGTAAGTGAGAAAATGTATCAAATGTATTTTATATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATAAAAGATGGTAAGTGAGAAAATGTATCAAATGTATTTTATATA  899

seq1  TATATATATATATGTGTGTGTGTGTGTGTG  930
      ||||||||||||||||||||||||||||||
seq2  TATATATATATATGTGTGTGTGTGTGTGTG  929


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