BAC Information

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BAC

Clone NameB6Ng01-336L01
Chromosome14 (Build37)8 (Build37)
Map Location 84,108,531 - 84,109,66658,454,050 - 58,454,085
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100043773
Downstream geneLOC100043279, LOC100043775, LOC100043776, LOC100043280, LOC100043285, Pcdh17, 9630013A20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336L01.bB6Ng01-336L01.g
ACCGA121536GA121537
length1,16981
definitionB6Ng01-336L01.b B6Ng01-336L01.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(84,108,531 - 84,109,666)(58,454,050 - 58,454,085)
sequence
gaattccacatagatccttcacagacatctcctcccattgatgcctgaca
aggccatcctctgccacatatgtggctggaacaatgggtccctccatgtg
tactatttggttggtggtttactccctgggagctctgggagtactgtttg
gttcacattgctgttcctcctatggggctgcaagctccttcaggtgcttg
ggtcctttgtctaccttctccagtggggaccctgtgcttagtccaataac
cattggctgacagcatctacctctgtatttgttaggcagagcatctcagg
agacagctatatcaggcttctgtcagcaagcatttgttggcatccaaatt
agtgtctgggtttggtgactgtatataggatggatccccaggtaggacag
tctctggatggtctttccttctgtctctgattacacaatgtcttcatatt
tgctcctgtgagtattttgtttccctttctaagatggaccaaagcaccca
cactttagtcttccttcttcttgagcttcatgtggtctgtgaattgtttt
tccctccctttctccttccacgccatccctacctaaacagttctatgttc
attgtctctctttttcaaaaagaaagaaagaaagacaaccaaaagcaaaa
cgcaaaaagatattctggaaaagataaattaaaacatgtagataaaaatg
agacaagttccaaaacagagcacaatgaaacaaaaagcccactaaaatta
tactgagcatgtgtaatagctggttttgtttgtcaacttgacacatctgg
agttgtcacagagaaaggagcttcggttggagagatgcctccacgagatc
cagctgtggtgcattttctcagttagtgatcaagggggaaaggccccatg
tgggtgggaccatctctgggctggtagtcttgggttctatagagagcagg
ctgagaatccaggggaagcaagccattaatacatccctccatggcttctg
cattagctcctgcttcctgacctgcttgattgagttccagtcctgtatcc
tttggtgaacagtatggtggaaagtgtcagcagaataacctttctcccaa
cctgcttcttggccatgatgtttgtgcagaaatagcacctaacagacggc
atgtttgtgtgcacgtata

cagggccaagaagtgggagtgggtgggtaggggagtaggtgggagagctt
gtgcgaaaattttgggatggcttgaaaatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_84108531_84109666
seq2: B6Ng01-336L01.b_93_1212

seq1  AAGGCCATCCTCTGCCACATATGTGGCTGGAACAATGGGTCCCTCCATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCATCCTCTGCCACATATGTGGCTGGAACAATGGGTCCCTCCATGT  50

seq1  GTACTATTTGGTTGGTGGTTTACTCCCTGGGAGCTCTGGGAGTACTGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTATTTGGTTGGTGGTTTACTCCCTGGGAGCTCTGGGAGTACTGTTT  100

seq1  GGTTCACATTGCTGTTCCTCCTATGGGGCTGCAAGCTCCTTCAGGTGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCACATTGCTGTTCCTCCTATGGGGCTGCAAGCTCCTTCAGGTGCTT  150

seq1  GGGTCCTTTGTCTACCTTCTCCAGTGGGGACCCTGTGCTTAGTCCAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCTTTGTCTACCTTCTCCAGTGGGGACCCTGTGCTTAGTCCAATAA  200

seq1  CCATTGGCTGACAGCATCTACCTCTGTATTTGTTAGGCAGAGCATCTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGGCTGACAGCATCTACCTCTGTATTTGTTAGGCAGAGCATCTCAG  250

seq1  GAGACAGCTATATCAGGCTTCTGTCAGCAAGCATTTGTTGGCATCCAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGCTATATCAGGCTTCTGTCAGCAAGCATTTGTTGGCATCCAAAT  300

seq1  TAGTGTCTGGGTTTGGTGACTGTATATAGGATGGATCCCCAGGTAGGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTCTGGGTTTGGTGACTGTATATAGGATGGATCCCCAGGTAGGACA  350

seq1  GTCTCTGGATGGTCTTTCCTTCTGTCTCTGATTACACAATGTCTTCATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGGATGGTCTTTCCTTCTGTCTCTGATTACACAATGTCTTCATAT  400

seq1  TTGCTCCTGTGAGTATTTTGTTTCCCTTTCTAAGATGGACCAAAGCACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCCTGTGAGTATTTTGTTTCCCTTTCTAAGATGGACCAAAGCACCC  450

seq1  ACACTTTAGTCTTCCTTCTTCTTGAGCTTCATGTGGTCTGTGAATTGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTTAGTCTTCCTTCTTCTTGAGCTTCATGTGGTCTGTGAATTGTTT  500

seq1  TTCCCTCCCTTTCTCCTTCCACGCCATCCCTACCTAAACAGTTCTATGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCCCTTTCTCCTTCCACGCCATCCCTACCTAAACAGTTCTATGTT  550

seq1  CATTGTCTCTCTTTTTCAAAAAGAAAGAAAGAAAGACAACCAAAAGCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTCTCTCTTTTTCAAAAAGAAAGAAAGAAAGACAACCAAAAGCAAA  600

seq1  ACGCAAAAAGATATTCTGGAAAAGATAAATTAAAACATGTAGATAAAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCAAAAAGATATTCTGGAAAAGATAAATTAAAACATGTAGATAAAAAT  650

seq1  GAGACAAGTTCCAAAACAGAGCACAATGAAACAAAAAGCCCACTAAAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAAGTTCCAAAACAGAGCACAATGAAACAAAAAGCCCACTAAAATT  700

seq1  ATACTGAGCATGTGTAATAGCTGGTTTTGTTTGTCAACTTGACACATCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGAGCATGTGTAATAGCTGGTTTTGTTTGTCAACTTGACACATCTG  750

seq1  GAGTTGTCACAGAGAAAGGAGCTTCGGTTGGAGAGATGCCTCCACGAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGTCACAGAGAAAGGAGCTTCGGTTGGAGAGATGCCTCCACGAGAT  800

seq1  CCAGCTGTGGTGCATTTTCTCAGTTAGTGATCAAGGGGGAAAGGCCCCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGTGGTGCATTTTCTCAGTTAGTGATCAAGGGGGAAAGGCCCCAT  850

seq1  GTGGGTGGGACCATCTCTGGGCTGGTAGTCTTGGGTTCTATAAGAGAGCA  900
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GTGGGTGGGACCATCTCTGGGCTGGTAGTCTTGGGTTCTAT-AGAGAGCA  899

seq1  GGCTGAGAAATCCAGGGGAAGCAAGCCATTAAATAACATCCCTCCATGGC  950
      ||||||| ||||||||||||||||||||||||   |||||||||||||||
seq2  GGCTGAG-AATCCAGGGGAAGCAAGCCATTAA--TACATCCCTCCATGGC  946

seq1  TTCTGCATTAGCTCCTGCTTCCTGACCTGCTTGAATTGAGTTCCAGTCCT  1000
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTCTGCATTAGCTCCTGCTTCCTGACCTGCTTG-ATTGAGTTCCAGTCCT  995

seq1  GTATCCTTTGGTGAACAGTAATGTGGAAAGTGTCAGCAGAATAAACCCTT  1050
      ||||||||||||||||||||  ||||||||||||||||||||||  ||||
seq2  GTATCCTTTGGTGAACAGTATGGTGGAAAGTGTCAGCAGAATAA--CCTT  1043

seq1  TCCTCCCCAAACTGCTTCTTGGTCATGATGTTTGTGCAGAAATAGAAACC  1100
      ||   ||||| ||||||||||| |||||||||||||||||||||| |  |
seq2  TC--TCCCAACCTGCTTCTTGGCCATGATGTTTGTGCAGAAATAGCA--C  1089

seq1  CTAACCAAGACAGCATGTTTTGTGTGCCCACGTATA  1136
      |||||  |||| ||||| ||||||||  ||||||||
seq2  CTAAC--AGACGGCATG-TTTGTGTG--CACGTATA  1120


seq1: chr8_58454050_58454085
seq2: B6Ng01-336L01.g_73_108 (reverse)

seq1  ACTCCCCTACCCACCCACTCCCACTTCTTGACCCTG  36
      |||||||||||||||||||||||||||||| |||||
seq2  ACTCCCCTACCCACCCACTCCCACTTCTTGGCCCTG  36


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