BAC Information

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BAC

Clone NameB6Ng01-336L13
Chromosome8 (Build37)
Map Location 108,382,309 - 108,484,695
singlet/doubletdoublet
Overlap geneNutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4
Upstream geneLOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11
Downstream geneDpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336L13.bB6Ng01-336L13.g
ACCGA121560GA121561
length907683
definitionB6Ng01-336L13.b B6Ng01-336L13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,483,790 - 108,484,695)(108,382,309 - 108,382,986)
sequence
gaattctttccctctctttccacaggacagggtaaccacagagagaatag
ccctttcctttgccctttggacgcctccagaggaaatgactactatgacc
ggaacttggcactgtttgaggtatctaaggagccattcaggtgtggtcgt
ctggaaggggcttctccggacctctcagctaagcatcaggctggcttctc
ttccactcccaactgccctctctttgcagccatccaggctatggatctca
tggccctttcaatacacttcaccttcccagacccccttgcaaccttacgt
ctgtcctccagggccagtatcctttgccttccttgcagcccctcaccaag
gtgaccacttcctcctcccctccattcctagggcctctcccagcccatgg
ctctgctgtggatagattctttcctttctcctttcctattggctcttcca
gctgttaccctctggttacagaggcttgttttccctccagcctctgtccc
actctgccctccatagctagagctgcagggaatgtgtctctggaaagatt
cccatgtttgtgccttccaacgggaaatttccctttctggacccaagctg
agaagtaagatctggatttaagacatggttcagggtcctaaactccgaac
ctgtacattcatctgcctcacagccaagtaatgtcagcttctcggtctcc
acacattcaaagggcctacatcttcactcatcactcctaacctggcttcc
tgtgtataggatcagaagggacataaaagcttaagacagtgggcagatgg
gagagtcacataggccacaggggcaagaaacccttggaccccttggagtg
ctggaagtcttgtgctctgtccccacctgaagatttgtgtatgtatgtgt
gttatgt
gaattcactttgtagaccaggctggcctcaaactcagaaatccaactgcc
tctgcctcccaagtgctgggattaaaggtatgtgccacccacgcccagca
ggatgtactctttaactattgattcatctttgtagctctgtagatgcctt
ttaacattacctgtttctgtgactgttgggacatgcgtgtactctacctc
cttaggctctggctctgttaaacttgactatgactgtaagctggagtgaa
cccaagacaccagggtctacttccctttttgtcctttggctctgagttgg
gaaatgggtcttgagaaagctgcagtattagccaagcatggtcgagcacg
cctttaatcccagcactcaggaggcagaggcagacggatttctgaggcca
acctggtctacagagtgaattccgcggttccctctattacacaaagaaac
cctgtctagaaaaaaaccaaaccaaccaaccaaataaacaaacaaaaaga
aagctgctgtatgtgctgtataggtgcccagtttaggaagaagctacatc
ggcctctttagggttagctctggcttgtgatcaggtggtgaaaacacagc
agtgtattttcaggctaccaaccaataccctttcctttagaaatgggggc
ttctctctccagccctgtccttgagtttcctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_108483790_108484695
seq2: B6Ng01-336L13.b_45_951 (reverse)

seq1  ACATAACACACATACATACAC-AATCTTCAGGTGGGGACAGAGCACAAGA  49
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACATAACACACATACATACACAAATCTTCAGGTGGGGACAGAGCACAAGA  50

seq1  CTTCCAGCACTCCAAGGGGTCCAAGGGTTTCTTGCCCCTGTGGCCTATGT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGCACTCCAAGGGGTCCAAGGGTTTCTTGCCCCTGTGGCCTATGT  100

seq1  GACTCTCCCATCTGCCCACTGTCTTAAGCTTTTATGTCCCTTCTGATCCT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTCCCATCTGCCCACTGTCTTAAGCTTTTATGTCCCTTCTGATCCT  150

seq1  ATACACAGGAAGCCAGGTTAGGAGTGATGAGTGAAGATGTAGGCCCTTTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACAGGAAGCCAGGTTAGGAGTGATGAGTGAAGATGTAGGCCCTTTG  200

seq1  AATGTGTGGAGACCGAGAAGCTGACATTACTTGGCTGTGAGGCAGATGAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTGGAGACCGAGAAGCTGACATTACTTGGCTGTGAGGCAGATGAA  250

seq1  TGTACAGGTTCGGAGTTTAGGACCCTGAACCATGTCTTAAATCCAGATCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAGGTTCGGAGTTTAGGACCCTGAACCATGTCTTAAATCCAGATCT  300

seq1  TACTTCTCAGCTTGGGTCCAGAAAGGGAAATTTCCCGTTGGAAGGCACAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCTCAGCTTGGGTCCAGAAAGGGAAATTTCCCGTTGGAAGGCACAA  350

seq1  ACATGGGAATCTTTCCAGAGACACATTCCCTGCAGCTCTAGCTATGGAGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGGAATCTTTCCAGAGACACATTCCCTGCAGCTCTAGCTATGGAGG  400

seq1  GCAGAGTGGGACAGAGGCTGGAGGGAAAACAAGCCTCTGTAACCAGAGGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGTGGGACAGAGGCTGGAGGGAAAACAAGCCTCTGTAACCAGAGGG  450

seq1  TAACAGCTGGAAGAGCCAATAGGAAAGGAGAAAGGAAAGAATCTATCCAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGCTGGAAGAGCCAATAGGAAAGGAGAAAGGAAAGAATCTATCCAC  500

seq1  AGCAGAGCCATGGGCTGGGAGAGGCCCTAGGAATGGAGGGGAGGAGGAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGCCATGGGCTGGGAGAGGCCCTAGGAATGGAGGGGAGGAGGAAG  550

seq1  TGGTCACCTTGGTGAGGGGCTGCAAGGAAGGCAAAGGATACTGGCCCTGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCACCTTGGTGAGGGGCTGCAAGGAAGGCAAAGGATACTGGCCCTGG  600

seq1  AGGACAGACGTAAGGTTGCAAGGGGGTCTGGGAAGGTGAAGTGTATTGAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGACGTAAGGTTGCAAGGGGGTCTGGGAAGGTGAAGTGTATTGAA  650

seq1  AGGGCCATGAGATCCATAGCCTGGATGGCTGCAAAGAGAGGGCAGTTGGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCATGAGATCCATAGCCTGGATGGCTGCAAAGAGAGGGCAGTTGGG  700

seq1  AGTGGAAGAGAAGCCAGCCTGATGCTTAGCTGAGAGGTCCGGAGAAGCCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAAGAGAAGCCAGCCTGATGCTTAGCTGAGAGGTCCGGAGAAGCCC  750

seq1  CTTCCAGACGACCACACCTGAATGGCTCCTTAGATACCTCAAACAGTGCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGACGACCACACCTGAATGGCTCCTTAGATACCTCAAACAGTGCC  800

seq1  AAGTTCCGGTCATAGTAGTCATTTCCTCTGGAGGCGTCCAAAGGGCAAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCCGGTCATAGTAGTCATTTCCTCTGGAGGCGTCCAAAGGGCAAAG  850

seq1  GAAAGGGCTATTCTCTCTGTGGTTACCCTGTCCTGTGGAAAGAGAGGGAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGCTATTCTCTCTGTGGTTACCCTGTCCTGTGGAAAGAGAGGGAA  900

seq1  AGAATTC  906
      |||||||
seq2  AGAATTC  907

seq1: chr8_108382309_108382986
seq2: B6Ng01-336L13.g_66_748

seq1  GAATTCACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCAACTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCAACTGCC  50

seq1  TCTGCCTCCCAAGTGCTGGGATTAAAGGTATGTGCCACCCACGCCCAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCAAGTGCTGGGATTAAAGGTATGTGCCACCCACGCCCAGCA  100

seq1  GGATGTACTCTTTAACTATTGATTCATCTTTGTAGCTCTGTAGATGCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTACTCTTTAACTATTGATTCATCTTTGTAGCTCTGTAGATGCCTT  150

seq1  TTAACATTACCTGTTTCTGTGACTGTTGGGACATGCGTGTACTCTACCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATTACCTGTTTCTGTGACTGTTGGGACATGCGTGTACTCTACCTC  200

seq1  CTTAGGCTCTGGCTCTGTTAAACTTGACTATGACTGTAAGCTGGAGTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGCTCTGGCTCTGTTAAACTTGACTATGACTGTAAGCTGGAGTGAA  250

seq1  CCCAAGACACCAGGGTCTACTTCCCTTTTTGTCCTTTGGCTCTGAGTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGACACCAGGGTCTACTTCCCTTTTTGTCCTTTGGCTCTGAGTTGG  300

seq1  GAAATGGGTCTTGAGAAAGCTGCAGTATTAGCCAAGCATGGTCGAGCACG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGGGTCTTGAGAAAGCTGCAGTATTAGCCAAGCATGGTCGAGCACG  350

seq1  CCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGACGGATTTCTGAGGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGACGGATTTCTGAGGCCA  400

seq1  ACCTGGTCTACAGAGTGAGCTCCAGGATAGCCAGGGCTACACAGAGAAAC  450
      ||||||||||||||||||  |||  | |  ||     |||||| ||||||
seq2  ACCTGGTCTACAGAGTGAATTCCGCGGTTCCCTCTATTACACAAAGAAAC  450

seq1  CCTGTCTAGAAAAAAACCAAACCAACCAACCAAATAAACAAACAAAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTAGAAAAAAACCAAACCAACCAACCAAATAAACAAACAAAAAGA  500

seq1  AAGCTGCTGTATGTGCTGTATAGGTGCCCAGTTTAGGAAGAAGCTACATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGCTGTATGTGCTGTATAGGTGCCCAGTTTAGGAAGAAGCTACATC  550

seq1  GGCCTC-TTAGGGTTAGCTCTGGCTTGTGATCAGGTGGTGAAAACACAGC  599
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTTTAGGGTTAGCTCTGGCTTGTGATCAGGTGGTGAAAACACAGC  600

seq1  AGTGTATTTTCAGGCTACCAACCAATACCC-TTCCCTTAG-AATGGGGGC  647
      |||||||||||||||||||||||||||||| |||| |||| |||||||||
seq2  AGTGTATTTTCAGGCTACCAACCAATACCCTTTCCTTTAGAAATGGGGGC  650

seq1  TTCTCTCTCCAG-CCTGTCCTTGAG-TTCCTGG  678
      |||||||||||| |||||||||||| |||||||
seq2  TTCTCTCTCCAGCCCTGTCCTTGAGTTTCCTGG  683