BAC Information

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BAC

Clone NameB6Ng01-337C14
Chromosome8 (Build37)
Map Location 120,747,572 - 120,883,136
singlet/doubletdoublet
Overlap geneCdh13
Upstream gene4933407C03Rik, Plcg2, 4632417N05Rik, Hsd17b2, Mphosph6
Downstream geneHsbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-337C14.bB6Ng01-337C14.g
ACCGA121872GA121873
length1,141894
definitionB6Ng01-337C14.b B6Ng01-337C14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,747,572 - 120,748,201)(120,882,249 - 120,883,136)
sequence
gaattccataaaacccacaaaactggaagccataatgtatccacaaaatg
agagagagagagagagagagaaagagaataaacattttaaaagattttta
aaaagccccaacatgatgagacaaggagcctccaaagataccattgcttt
cattttccattggtcatcgactgctggacacaagtcctacctattaagag
tagtttgtttcctcagtgagactaccttggagaaaactaaaatttcattt
gcaagtgcttatccactgggttagggactatgtgtccacttcttctttca
gctctgggacccgtcgggtgcagccccacgcaatccctgtgcacgctgac
tcagatgctgagagttcatgtgatcctgttcatttagagggccttgtttc
cttggagtcttccattctctctggctcttccactctctctgcctccggat
cctagagttaaggtatttggtggagtcatcctgcttagggctgagtgttc
caagttctcgcactctctgtgtagtgtctggctgtggtctctgcatttgt
tcctgtctgctgcaggaggaagcttctctgatgatggctgtcttagtcag
ggtttctattcctgcacaaacatcatgaccaagaagcaagttggggagga
aagggtttattcggcttacatttccatactgctgttgatcaccaaaggat
gcaggactggaactcaagcaggtcaggaagcaggagctgatgcagaggcc
atggagggatgttctttactggcttgcttcacctggcttgctcagcctgc
tctcttatagaacccaagctaccagcacagagatggtcccacccacaagg
ggcctttcccccttggtcactaattgagaaaatgccttacagtttgatct
catggaggcatttcctcaactgaagcttctttctctgtaataactccagc
tgtgtcaagttgacacaaaactagccagtacaatggccgagcaaggcact
ggtgatacattgatttgaaagtttatgtggatgctagcaacaacaaaacc
tcagaaaacccacactcaagggccagaaacaaagactggcctgtgcatga
ctgtaatctctggtatggagctgtatctcatcttctatgtt
gaattcagattgatgtcttcaaaatccaggggctcaaatggccaactaca
ggctgttaggtgcccgatgtcttaaataaagtgtgccatttgacttaaat
tatttgttttaaaattattcccgtcgaatagactagagaaaatggtgagt
ttcagcccagggtttgtttgtttttttgtttgtttgtttgtttgtttgtt
tgtttgtttgtttggggggggcagcattatttttaatcgcagcatgggtg
gtaaagtgggagatgactggagttttgctaatcagcctttgtgagctggt
aaggatgtgttcacttactctggtttacagacaggatggatctagctgga
acccatccatccgctcttacatccttgcggaagcagatgctgcgcaggag
cacaacacgcacaaagaaagaggctgcgcagccgggcactctggaggcag
atgcaggagatttctgagttcaaggccagcctggtctacaaagtgatttc
caggacagccagagctatacagagaaaccctgtctggaaaaacaaaacaa
aacaaaacaaaacaaaacaaaacaaaacaaaacgcaggagcacaacgatc
acaaagaggctgcgcaggagcccaatgctgtgcctcacccttgagctgtt
ccacttctcaactcagaggtagaagcatctgggaagtcatgaagtcagca
ctcaggcttcattgacctctcaatgatagaattacagtggccaaatacat
agccgactaagaaaacaagtccccacgcacaagagatccgcgtggcagaa
atgtctgatgctggcctgctccattcatacttttctcctaggctacctgt
gataaaatcaagaatctctatccattggttaatatccaatagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_120747572_120748201
seq2: B6Ng01-337C14.b_561_1188

seq1  TCTCTGTGTAGTGTCTGGCTGTGGTCTCTGCATTTGTTCCTGTCTGCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTGTAGTGTCTGGCTGTGGTCTCTGCATTTGTTCCTGTCTGCTGC  50

seq1  AGGAGGAAGCTTCTCTGATGATGGCTGTCTTAGTCAGGGTTTCTATTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAAGCTTCTCTGATGATGGCTGTCTTAGTCAGGGTTTCTATTCCT  100

seq1  GCACAAACATCATGACCAAGAAGCAAGTTGGGGAGGAAAGGGTTTATTCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAACATCATGACCAAGAAGCAAGTTGGGGAGGAAAGGGTTTATTCG  150

seq1  GCTTACATTTCCATACTGCTGTTGATCACCAAAGGATGCAGGACTGGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACATTTCCATACTGCTGTTGATCACCAAAGGATGCAGGACTGGAAC  200

seq1  TCAAGCAGGTCAGGAAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCAGGTCAGGAAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGTT  250

seq1  CTTTACTGGCTTGCTTCACCTGGCTTGCTCAGCCTGCTCTCTTATAGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACTGGCTTGCTTCACCTGGCTTGCTCAGCCTGCTCTCTTATAGAAC  300

seq1  CCAAGCTACCAGCACAGAGATGGTCCCACCCACAAGGGGCCTTTCCCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCTACCAGCACAGAGATGGTCCCACCCACAAGGGGCCTTTCCCCCT  350

seq1  TGGTCACTAATTGAGAAAATGCCTTACAGTTTGATCTCATGGAGGCATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCACTAATTGAGAAAATGCCTTACAGTTTGATCTCATGGAGGCATTT  400

seq1  CCTCAACTGAAGCTCCTTTCTCTGTAATAACTCCAGCTGTGTCAAGTTGA  450
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCTCAACTGAAGCTTCTTTCTCTGTAATAACTCCAGCTGTGTCAAGTTGA  450

seq1  CACAAAACTAGCCAGTACAATGGCCGAGCAAGGCACTGGTGATACA-TGA  499
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CACAAAACTAGCCAGTACAATGGCCGAGCAAGGCACTGGTGATACATTGA  500

seq1  TTTGAAAGTTTATGTGGAATGGCTAGCAACAACAAAA-CTCAGAAAACCA  548
      ||||||||||||||||||   |||||||||||||||| ||||||||||| 
seq2  TTTGAAAGTTTATGTGGA--TGCTAGCAACAACAAAACCTCAGAAAACCC  548

seq1  ACACTCCAAGGGCAG-AACAAAGACTGGGCTTGTGCATGACCTGGAATTC  597
      |||||| | || ||| |||||||||| ||| ||||||||| ||| || ||
seq2  ACACTCAAGGGCCAGAAACAAAGACT-GGCCTGTGCATGA-CTGTAA-TC  595

seq1  TTCTGTATGGAGCTGTATCTCATCTCCTATGTT  630
      |   ||||||||||||||||||||| |||||||
seq2  TCTGGTATGGAGCTGTATCTCATCTTCTATGTT  628

seq1: chr8_120882249_120883136
seq2: B6Ng01-337C14.g_67_960 (reverse)

seq1  GACTA-TAGATATT-AGCATTGGATAGAGATACTAGATATTAACACAGGT  48
      ||||| | |||||| | || ||||||||||| || ||| ||| |||||||
seq2  GACTATTGGATATTAACCAATGGATAGAGATTCTTGATTTTATCACAGGT  50

seq1  AGCCTAGGAG-AAAGTATGAATGGAGCAGGCCAGCATCAAACA-TTCTGC  96
      |||||||||| |||||||||||||||||||||||||||| ||| ||||||
seq2  AGCCTAGGAGAAAAGTATGAATGGAGCAGGCCAGCATCAGACATTTCTGC  100

seq1  CACGCGGATCTCTTGTGCGTGGGGACTTG-TTTCTTAGTCGGCTATGTAT  145
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CACGCGGATCTCTTGTGCGTGGGGACTTGTTTTCTTAGTCGGCTATGTAT  150

seq1  TTGGCCACTGTAATTCTATCCTTGAGAGGTCAATGAAGCCTGAGTGCTGA  195
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTGGCCACTGTAATTCTATCATTGAGAGGTCAATGAAGCCTGAGTGCTGA  200

seq1  CTTCATGGCTT-CCAGATGCTTCTACCTCTGAGTTGAGAAGTGGAACAGC  244
      ||||||| ||| ||||||||||||||||||||||||||||||||||||||
seq2  CTTCATGACTTCCCAGATGCTTCTACCTCTGAGTTGAGAAGTGGAACAGC  250

seq1  TCAAGGGTGAGGCACAGCATTGGGCTCCTGCGCAGCCTCTTTGTGATCGT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGGTGAGGCACAGCATTGGGCTCCTGCGCAGCCTCTTTGTGATCGT  300

seq1  TGTGCTCCTGCGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTCCTGCGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTT  350

seq1  TGTTTTTCCAGACAGGGTTTCTCTGTATAGCTCTGGCTGTCCTGGAAATC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTCCAGACAGGGTTTCTCTGTATAGCTCTGGCTGTCCTGGAAATC  400

seq1  ACTTTGTAGACCAGGCTGGCCTTGAACTCAGAAATCTCCTGCATCTGCCT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTAGACCAGGCTGGCCTTGAACTCAGAAATCTCCTGCATCTGCCT  450

seq1  CCAGAGTGCCCGGCTGCGCAGCCTCTTTCTTTGTGCGTGTTGTGCTCCTG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGTGCCCGGCTGCGCAGCCTCTTTCTTTGTGCGTGTTGTGCTCCTG  500

seq1  CGCAGCATCTGCTTCCGCAAGGATGTAAGAGCGGATGGATGGGTTCCAGC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGCATCTGCTTCCGCAAGGATGTAAGAGCGGATGGATGGGTTCCAGC  550

seq1  TAGATCCATCCTGTCTGTAAACCAGAGTAAGTGAACACATCCTTACCAGC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCCATCCTGTCTGTAAACCAGAGTAAGTGAACACATCCTTACCAGC  600

seq1  TCACAAAGGCTGATTAGCAAAACTCCAGTCATCTCCCACTTTACCACCCA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAAGGCTGATTAGCAAAACTCCAGTCATCTCCCACTTTACCACCCA  650

seq1  TGCTGCGATTAAAAATAATGCTGCCCCCCCCAAACAAACAAACAAACAAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCGATTAAAAATAATGCTGCCCCCCCCAAACAAACAAACAAACAAA  700

seq1  CAAACAAACAAACAAACAAAAAAACAAACAAACCCTGGGCTGAAACTCAC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAACAAACAAACAAAAAAACAAACAAACCCTGGGCTGAAACTCAC  750

seq1  CATTTTCTCTAGTCTATTCGACGGGAATAATTTTAAAACAAATAATTTAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTCTAGTCTATTCGACGGGAATAATTTTAAAACAAATAATTTAA  800

seq1  GTCAAATGGCACACTTTATTTAAGACATCGGGCACCTAACAGCCTGTAGT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAATGGCACACTTTATTTAAGACATCGGGCACCTAACAGCCTGTAGT  850

seq1  TGGCCATTTGAGCCCCTGGATTTTGAAGACATCAATCTGAATTC  888
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCATTTGAGCCCCTGGATTTTGAAGACATCAATCTGAATTC  894