BAC Information

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BAC

Clone NameB6Ng01-337D24
Chromosome8 (Build37)
Map Location 102,464,006 - 102,567,535
singlet/doubletdoublet
Overlap geneLOC100042069
Upstream geneCdh8, A330008L17Rik, LOC667531
Downstream geneLOC436054, LOC100042078, LOC100042086, LOC100042092, LOC384895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-337D24.bB6Ng01-337D24.g
ACCGA121932GA121933
length1,1831,069
definitionB6Ng01-337D24.b B6Ng01-337D24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,464,006 - 102,465,186)(102,566,464 - 102,567,535)
sequence
gaattcactatgaagccattatagctaaaatagtaaatttctgtttcatt
gaagagaacttatctcaaaagtaatttagactacaatcctgatgtgaacc
aatatattcgataattgtatacatggggactcacatgtaaacatgcatgt
atatcacacacgcacacacacacacacacacacacacacactaaatgtac
aaataatttcaataatgtttgaagttttgaaaactttttttctgtcatat
ttttgttagagtagtgctaatgtgttttgtccttcatttgattatttaca
agaacagacaaatcagccccacctctctacattcatctagttgcaggaac
ctaattgaaataagttggtctcttctattcttcctcacacactcatttgc
tgatacatatcaacatgtgcatcattataaattcctattagctttacaaa
aattgagtatttttttctaaactggtgaaaagtggccttatatttctgta
attgggaattaaaattttgacgttttcatcctttgaaatccagtccattc
acaaccaattatttattaaatttagaaactgttcattttcttggtaaatt
actctccttcagattcgatatataatgcaatttcctgcaccagtaggttt
tcaaaatacaccctacagagaacgaaacttacaatcctggtaaaggaagt
aagtttgtcctgtatcccagtttcgacaatgataaggtttctcatagctc
tcccactccttgctcacctgcatgggcattatgtgctagctaaacgtttc
ctgaattttcagcagactttctttcccctgacctacaaaaccaccacaaa
acctgccactcaaaatgtctctacaaggggttatctatttcaagtggcag
aggagaacggacagaggaaaccaaggaatctcctcctaagagaaaatatt
actttctattataatgtggccctgtcaagcacgctgacctgtggctcctt
gagctctgaaagggaatacaccactgcgattttctaccaaccaattgaaa
tccttctgtgactatttactaaccttagtcttggtgctgtgttatccaca
gaatcctcatccgaatactaatgttttcgttaccttccggattgacagtt
gctcttgacgagactaccgcatgaacaacatat

gaattctcttgcttgtattatcaaacggtcagctttaaggctggggatat
aatctgtaatacacgacagagatgatgtccaagaatatatattgcaattt
aatagaagtgatggaagacaccatcaacaggacagagttctctgagtgaa
gctcacagataacctgaagattatgttgttgtgctgaaggaaagagagaa
atgattggaaataaatatcttaaaatgtttcagatattctcattccagtg
tgtgtctaaaatctaatccaggtcaaacctgagtgattttacttgaaaag
gttagagaagtaggtaaggtaaacatggtaaaataaatcttttttttttt
ttgacagagacacaaaagtatattgctaagtattatgtagaaaccaagac
aaaaatctagagtatcttaggagaaaagggtagccatgttagcctgcctg
acctcctatagaaaagtggcagcacagttaatgataaattactgtgactg
catctgggagaccttgtatgtgactttgcttttattagtgtaattatagt
tatttttttctactgcatgtattgtacctgactaacaactggacctcacc
aaaacaaacaaacaaacaagcaaacaaacaaacaaataacagaaagtgtc
tctgatcatggaatgaaatggtgcatgaatccccacatgtgtgtgtatgt
atgtgcctgtgtatgtgtgtgtgtgcaatgcatgaggtatatctgtattc
tatgacagctatggaagagaagaaggcatggacattattcgataaatcag
atttagtagtaaaacaagacagaaactcacatttcatttgtactgtaatt
accaatattaatccagcctagaaatcataggactattcttttatttttgt
agtgttctttggtctgaatttttataatgtctttaattacacaaagcata
atttcatcatgacactcccttgtaggtataataatacttgggatgacaca
gccacttctccaatctttctcgtctctctctttctctctatcttctctaa
ttttatctaacatataaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_102464006_102465186
seq2: B6Ng01-337D24.b_47_1229

seq1  GAATTCACTATGAAGCCATTATAGCTAAAATAGTAAATTTCTGTTTCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATGAAGCCATTATAGCTAAAATAGTAAATTTCTGTTTCATT  50

seq1  GAAGAGAACTTATCTCAAAAGTAATTTAGACTACAATCCTGATGTGAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAACTTATCTCAAAAGTAATTTAGACTACAATCCTGATGTGAACC  100

seq1  AATATATTCGATAATTGTATACATGGGGACTCACATGTAAACATGCATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATTCGATAATTGTATACATGGGGACTCACATGTAAACATGCATGT  150

seq1  ATATCACACACGCACACACACACACACACACACACACACACTAAATGTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCACACACGCACACACACACACACACACACACACACACTAAATGTAC  200

seq1  AAATAATTTCAATAATGTTTGAAGTTTTGAAAACTTTTTTTCTGTCATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATTTCAATAATGTTTGAAGTTTTGAAAACTTTTTTTCTGTCATAT  250

seq1  TTTTGTTAGAGTAGTGCTAATGTGTTTTGTCCTTCATTTGATTATTTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTAGAGTAGTGCTAATGTGTTTTGTCCTTCATTTGATTATTTACA  300

seq1  AGAACAGACAAATCAGCCCCACCTCTCTACATTCATCTAGTTGCAGGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGACAAATCAGCCCCACCTCTCTACATTCATCTAGTTGCAGGAAC  350

seq1  CTAATTGAAATAAGTTGGTCTCTTCTATTCTTCCTCACACACTCATTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTGAAATAAGTTGGTCTCTTCTATTCTTCCTCACACACTCATTTGC  400

seq1  TGATACATATCAACATGTGCATCATTATAAATTCCTATTAGCTTTACAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACATATCAACATGTGCATCATTATAAATTCCTATTAGCTTTACAAA  450

seq1  AATTGAGTATTTTTTTCTAAACTGGTGAAAAGTGGCCTTATATTTCTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAGTATTTTTTTCTAAACTGGTGAAAAGTGGCCTTATATTTCTGTA  500

seq1  ATTGGGAATTAAAATTTTGACGTTTTCATCCTTTGAAATCCAGTCCATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGAATTAAAATTTTGACGTTTTCATCCTTTGAAATCCAGTCCATTC  550

seq1  ACAACCAATTATTTATTAAATTTAGAAACTGTTCATTTTCTTGGTAAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCAATTATTTATTAAATTTAGAAACTGTTCATTTTCTTGGTAAATT  600

seq1  ACTCTCCTTCAGATTCGATATATAATGCAATTTCCTGCACCAGTAGGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCCTTCAGATTCGATATATAATGCAATTTCCTGCACCAGTAGGTTT  650

seq1  TCAAAATACACCCTACAGAGAACGAAACTTACAATCCTGGTAAAGGAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATACACCCTACAGAGAACGAAACTTACAATCCTGGTAAAGGAAGT  700

seq1  AAGTTTGTCCTGTATCCCAGTTTCGACAATGATAAGGTTTCTCATAGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGTCCTGTATCCCAGTTTCGACAATGATAAGGTTTCTCATAGCTC  750

seq1  TCCCACTCCTTGCTCACCTGCATGGGCATTATGTGCTAGCTAAACGTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACTCCTTGCTCACCTGCATGGGCATTATGTGCTAGCTAAACGTTTC  800

seq1  CTGAATTTTCAGCAGACTTTCTTTCCCCTGACCTACAAAACCACCACAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTTTCAGCAGACTTTCTTTCCCCTGACCTACAAAACCACCACAAA  850

seq1  ACCTGCCACTCAAAATGTCTCTACAAGGGGTTATCTATTTCAAGTGGCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCCACTCAAAATGTCTCTACAAGGGGTTATCTATTTCAAGTGGCAG  900

seq1  AGGAGAACGGACAGAGGAAACCAAGGAATCTCCTCCTAAGAG-AAATATT  949
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGGAGAACGGACAGAGGAAACCAAGGAATCTCCTCCTAAGAGAAAATATT  950

seq1  ACTTTCTATTATAATGTGGCCCTGTCAAGCACGCTGACCTGTGGCTCCTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTATTATAATGTGGCCCTGTCAAGCACGCTGACCTGTGGCTCCTT  1000

seq1  GAGCTCTGAAA-GGAATACA-CACTGCGATTTTCTACCAACCAATTG-AA  1046
      ||||||||||| |||||||| |||||||||||||||||||||||||| ||
seq2  GAGCTCTGAAAGGGAATACACCACTGCGATTTTCTACCAACCAATTGAAA  1050

seq1  TCCTTCTGTGACTAATTTACTTAACCCTAGTCTTTGTGCTGTTGTTAATC  1096
      ||||||||||||| |||||| ||||| ||||||| |||||| |||| |||
seq2  TCCTTCTGTGACT-ATTTAC-TAACCTTAGTCTTGGTGCTG-TGTT-ATC  1096

seq1  CACAAGAATCCTCATCCCGATACT-ATGTTTTCCGTACCTTCCGG-TTGA  1144
      ||| |||||||||||||  ||||| ||||||||  |||||||||| ||||
seq2  CAC-AGAATCCTCATCCGAATACTAATGTTTTCGTTACCTTCCGGATTGA  1145

seq1  CCAGTTGGCTCTT-AC-AGACTA-CGCATGAACAACATAT  1181
       ||||| |||||| || |||||| ||||||||||||||||
seq2  -CAGTT-GCTCTTGACGAGACTACCGCATGAACAACATAT  1183


seq1: chr8_102566464_102567535
seq2: B6Ng01-337D24.g_63_1131 (reverse)

seq1  TTTTATAATGTTTAGATAAAAATAGAGGAAGATAGAGAGAAAGAGAGAGA  50
      |||||| ||| |||||||||| |||| |||||||||||||||||||||||
seq2  TTTTAT-ATG-TTAGATAAAATTAGA-GAAGATAGAGAGAAAGAGAGAGA  47

seq1  AGAGAAAAGATTGGAGAAAGTGGCTGGTGTCAT-CCAAGTA-TATTATAC  98
       ||| ||||||||||| |||||||| ||||||| ||||||| ||||||||
seq2  CGAG-AAAGATTGGAG-AAGTGGCT-GTGTCATCCCAAGTATTATTATAC  94

seq1  CTACAAGGGAGTGTCATGATG-AATTATGCTTTGTGTAATTAAAAGACAT  147
      ||||||||||||||||||||| ||||||||||||||||||| ||||||||
seq2  CTACAAGGGAGTGTCATGATGAAATTATGCTTTGTGTAATT-AAAGACAT  143

seq1  TAATAAAAATTCAGA-CAAAGAACACTACAAAAATAAAAGAATAGTCCTA  196
      | ||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  T-ATAAAAATTCAGACCAAAGAACACTACAAAAATAAAAGAATAGTCCTA  192

seq1  TGATTTCTAGGCTGGATTAATATTGGTAATTACAGTACAAATG-AATGTG  245
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGATTTCTAGGCTGGATTAATATTGGTAATTACAGTACAAATGAAATGTG  242

seq1  AGTTTCTGTCTTGTTTTACTACTAAATCTGATTTATCGAATAATGTCCAT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTGTCTTGTTTTACTACTAAATCTGATTTATCGAATAATGTCCAT  292

seq1  GCCTTCTTCTCTTCCATAGCTGTCATAGAATACAGATATACCTCATGCAT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCTTCTCTTCCATAGCTGTCATAGAATACAGATATACCTCATGCAT  342

seq1  TGCACACACACACATACACAGGCACATACATACACACACATGTGGGGATT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACACACACATACACAGGCACATACATACACACACATGTGGGGATT  392

seq1  CATGCACCATTTCATTCCATGATCAGAGACACTTTCTGTTATTTGTTTGT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCACCATTTCATTCCATGATCAGAGACACTTTCTGTTATTTGTTTGT  442

seq1  TTGTTTGCTTGTTTGTTTGTTTGTTTTGGTGAGGTCCAGTTGTTAGTCAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGCTTGTTTGTTTGTTTGTTTTGGTGAGGTCCAGTTGTTAGTCAG  492

seq1  GTACAATACATGCAGTAGAAAAAAATAACTATAATTACACTAATAAAAGC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAATACATGCAGTAGAAAAAAATAACTATAATTACACTAATAAAAGC  542

seq1  AAAGTCACATACAAGGTCTCCCAGATGCAGTCACAGTAATTTATCATTAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCACATACAAGGTCTCCCAGATGCAGTCACAGTAATTTATCATTAA  592

seq1  CTGTGCTGCCACTTTTCTATAGGAGGTCAGGCAGGCTAACATGGCTACCC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTGCCACTTTTCTATAGGAGGTCAGGCAGGCTAACATGGCTACCC  642

seq1  TTTTCTCCTAAGATACTCTAGATTTTTGTCTTGGTTTCTACATAATACTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCCTAAGATACTCTAGATTTTTGTCTTGGTTTCTACATAATACTT  692

seq1  AGCAATATACTTTTGTGTCTCTGTCAAAAAAAAAAAAAGATTTATTTTAC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATATACTTTTGTGTCTCTGTCAAAAAAAAAAAAAGATTTATTTTAC  742

seq1  CATGTTTACCTTACCTACTTCTCTAACCTTTTCAAGTAAAATCACTCAGG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTACCTTACCTACTTCTCTAACCTTTTCAAGTAAAATCACTCAGG  792

seq1  TTTGACCTGGATTAGATTTTAGACACACACTGGAATGAGAATATCTGAAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACCTGGATTAGATTTTAGACACACACTGGAATGAGAATATCTGAAA  842

seq1  CATTTTAAGATATTTATTTCCAATCATTTCTCTCTTTCCTTCAGCACAAC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAAGATATTTATTTCCAATCATTTCTCTCTTTCCTTCAGCACAAC  892

seq1  AACATAATCTTCAGGTTATCTGTGAGCTTCACTCAGAGAACTCTGTCCTG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAATCTTCAGGTTATCTGTGAGCTTCACTCAGAGAACTCTGTCCTG  942

seq1  TTGATGGTGTCTTCCATCACTTCTATTAAATTGCAATATATATTCTTGGA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGGTGTCTTCCATCACTTCTATTAAATTGCAATATATATTCTTGGA  992

seq1  CATCATCTCTGTCGTGTATTACAGATTATATCCCCAGCCTTAAAGCTGAC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATCTCTGTCGTGTATTACAGATTATATCCCCAGCCTTAAAGCTGAC  1042

seq1  CGTTTGATAATACAAGCAAGAGAATTC  1072
      |||||||||||||||||||||||||||
seq2  CGTTTGATAATACAAGCAAGAGAATTC  1069


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