BAC Information

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BAC

Clone NameB6Ng01-339B08
Chromosome8 (Build37)
Map Location 107,734,442 - 107,879,611
singlet/doubletdoublet
Overlap geneCbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5
Upstream geneBean, Tk2, Cklf, Cmtm2a, Cmtm2b, Cmtm3, Cmtm4, Dync1li2, Ccdc79, Appbp1, Car7, LOC628007, 4833426J09Rik, Cdh16, Rrad, 1110019N10Rik, EG637550, LOC382052, LOC100041473, Ces6, LOC628050, 4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408
Downstream genePlekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339B08.bB6Ng01-339B08.g
ACCGA123178GA123179
length9441,050
definitionB6Ng01-339B08.b B6Ng01-339B08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,734,442 - 107,735,377)(107,878,563 - 107,879,611)
sequence
ggaattcaggcttgtcaacaagtgcctttccccactgaaccatctctgac
ctagctttaaccttttaatgagttacaagggaaatgcatcaactcagaac
ttaaaacttaggttttatatctctgagccttagcattggctagggatgtt
gtcacttaggtttttctagacttactgccctgtgtgtgtaggcatcacta
acccctccatgttgcagtcttacctgctatatagtgagagtgaagcccga
cctcttcaatattaacttgtcgccaagtaccaaatataaagtatgaggag
actatatctgtctatatgtacatactcagtggattgcagctcttttcatg
actaaagcatttctccatggagagttttccacatttgtttacttttgttt
aataaaagaacagcaatcaactaaaacctttggtctattcagctagccct
gctcttggctatttttccaagaccttgctagtaactgctttgtcactctt
atattcatcttgtgatgacgtcctggaaactgggtttgctctatttctga
atgacattgtaataaacatataagaagcagaacagataataccctggtct
gtaatgagttgtctacattaatttttaaaaacaaattatgaccttaatgt
ttagagtgagttcagagagaatttctttgctattatgcatgtgtatggct
tactatccaggaaacttcctctaaaccatccaacctacgttagaaatggc
caaattttacatgagatgtggatctctgtgagtttgaggctaccagatct
atacagtgaggccctatgtttgggttttttgttttggtttggttttggtt
ttttttttttttttttttttttcgaagacagggattcctctgtgcagccc
tggctatgccctggtaattcactttgtaagaccaggtctggccc
gaattccaaggcaagctcctcccagaccccatttctccatagaggagagg
aaggaatgagacatcggaatagcctcctctgtcccaaacgctggctgggt
gagtcgcaacaatccagagaaggcagacattgaatgcaggccaagttggg
ggaaatactgaccgacgccctttaggtagtcagtggcctgcacgttggca
gagcccatctccacaaaggagttgcagaccttgtacagcacctgagtgac
aagaggggagacaggaagtaggagggggccatacgggggaagtgggcggg
aacagaagaaagctcagacatttcctccccaggggactaggaggaaaggt
ctaagcccggtcacgcctaaggtcaggggtcagcaagccaccagatgttc
ttaccacagttactgcatcattgagcagagactcgccgaagatgatgata
aagagggtctgattgacatgcacctcctcaaagacggccaacacggccac
agggtccactgctgagatgagactcccaaacagcaagaaatccagcaggc
cagcctgtaccctaggagctgccagcgagagacaagaagataatagggct
ggttgatgaagatgactctgtctctgacaggacttccggtgacaagacca
caagctttcctactgggaagaaataaacccaaagggagtttggaaaggtg
ggggaacgggcctgtgtcctacgggcttgagctgccgtgtgcctaagacc
tggctttgcccatcaccagttgctgtgacatgggctcttgttgttgtaac
aggactctttctttgcctaactcacaagatggctgcaaaaccattcagca
ggtgctagtaataaaactgcagcaatcgtaaaaggaaaagtagttgacag
caggtagaattggctggctttattacccaggataacaggacatgggttgt
cccacacctgtagtctcagccaacagatgggatgtgctgtgtaacacagt
tctcagaggaaaaggaaggctggatcagatgcccggattgcagtaagaaa

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_107734442_107735377
seq2: B6Ng01-339B08.b_50_991

seq1  GAATTCAGGCTTGTCAACAAGTGCCTTTCCCCACTGAACCATCTCTGACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGCTTGTCAACAAGTGCCTTTCCCCACTGAACCATCTCTGACC  50

seq1  TAGCTTTAACCTTTTAATGAGTTACAAGGGAAATGCATCAACTCAGAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTTAACCTTTTAATGAGTTACAAGGGAAATGCATCAACTCAGAACT  100

seq1  TAAAACTTAGGTTTTATATCTCTGAGCCTTAGCATTGGCTAGGGATGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTTAGGTTTTATATCTCTGAGCCTTAGCATTGGCTAGGGATGTTG  150

seq1  TCACTTAGGTTTTTCTAGACTTACTGCCCTGTGTGTGTAGGCATCACTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTAGGTTTTTCTAGACTTACTGCCCTGTGTGTGTAGGCATCACTAA  200

seq1  CCCCTCCATGTTGCAGTCTTACCTGCTATATAGTGAGAGTGAAGCCCGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCATGTTGCAGTCTTACCTGCTATATAGTGAGAGTGAAGCCCGAC  250

seq1  CTCTTCAATATTAACTTGTCGCCAAGTACCAAATATAAAGTATGAGGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCAATATTAACTTGTCGCCAAGTACCAAATATAAAGTATGAGGAGA  300

seq1  CTATATCTGTCTATATGTACATACTCAGTGGATTGCAGCTCTTTTCATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATCTGTCTATATGTACATACTCAGTGGATTGCAGCTCTTTTCATGA  350

seq1  CTAAAGCATTTCTCCATGGAGAGTTTTCCACATTTGTTTACTTTTGTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGCATTTCTCCATGGAGAGTTTTCCACATTTGTTTACTTTTGTTTA  400

seq1  ATAAAAGAACAGCAATCAACTAAAACCTTTGGTCTATTCAGCTAGCCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGAACAGCAATCAACTAAAACCTTTGGTCTATTCAGCTAGCCCTG  450

seq1  CTCTTGGCTATTTTTCCAAGACCTTGCTAGTAACTGCTTTGTCACTCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGGCTATTTTTCCAAGACCTTGCTAGTAACTGCTTTGTCACTCTTA  500

seq1  TATTCATCTTGTGATGACGTCCTGGAAACTGGGTTTGCTCTATTTCTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATCTTGTGATGACGTCCTGGAAACTGGGTTTGCTCTATTTCTGAA  550

seq1  TGACATTGTAATAAACATATAAGAAGCAGAACAGATAATACCCTGGTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATTGTAATAAACATATAAGAAGCAGAACAGATAATACCCTGGTCTG  600

seq1  TAATGAGTTGTCTACATTAATTTTTAAAAACAAATTATGACCTTAATGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAGTTGTCTACATTAATTTTTAAAAACAAATTATGACCTTAATGTT  650

seq1  TAGAGTGAGTTCAGAGAGAATTTCTTTGCTATTATGCATGTGTATGGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTGAGTTCAGAGAGAATTTCTTTGCTATTATGCATGTGTATGGCTT  700

seq1  ACTATCCAGGAAACTTCCTCTAAACCATCCAACCTACGTTAGAAATGGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCCAGGAAACTTCCTCTAAACCATCCAACCTACGTTAGAAATGGCC  750

seq1  AAATTTTACATGAGATGTGGATCTCTGTGAGTTTGAGGCTACCAGATCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTACATGAGATGTGGATCTCTGTGAGTTTGAGGCTACCAGATCTA  800

seq1  TACAGTGAGGCCCTATGTTTGGGTTTTTTGTTTTGGTTTGGTTTTGGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTGAGGCCCTATGTTTGGGTTTTTTGTTTTGGTTTGGTTTTGGTTT  850

seq1  TTTTTTTTTTTTTTTTTTTTTTCGAGACAGGG-TTTCTCTGTGCAGCCCT  899
      |||||||||||||||||||||   |||||||| || ||||||||||||||
seq2  TTTTTTTTTTTTTTTTTTTTTCGAAGACAGGGATTCCTCTGTGCAGCCCT  900

seq1  GGCTAT--CCTGG-AACTCACTTTGT-AGACCAGG-CTGGCC  936
      ||||||  ||||| || ||||||||| |||||||| ||||||
seq2  GGCTATGCCCTGGTAATTCACTTTGTAAGACCAGGTCTGGCC  942

seq1: chr8_107878563_107879611
seq2: B6Ng01-339B08.g_68_1117 (reverse)

seq1  TTTCTTACTGCAATCCGGCCTTCTGATCCAGCCTTCCTTTCCCTCTGAGA  50
      |||||||||||||||||| | ||||||||||||||||||| |||||||||
seq2  TTTCTTACTGCAATCCGGGCATCTGATCCAGCCTTCCTTTTCCTCTGAGA  50

seq1  ACTGTG-TACACAGCACAT-CCATCTGTTGGCTGAGAACTACAGGTGTGG  98
      |||||| |||||||||||| |||||||||||||||| |||||||||||||
seq2  ACTGTGTTACACAGCACATCCCATCTGTTGGCTGAG-ACTACAGGTGTGG  99

seq1  GACAACCCATGTCCTGTTATCCTGGGTAATAAAGCCAGCCAATTCTACCT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACCCATGTCCTGTTATCCTGGGTAATAAAGCCAGCCAATTCTACCT  149

seq1  GCTGTCAACTACTTTTCCTTTTACGATTGCTGCAGTTTTATTACTAGCAC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCAACTACTTTTCCTTTTACGATTGCTGCAGTTTTATTACTAGCAC  199

seq1  CTGCTGAATGGTTTTGCAGCCATCTTGTGAGTTAGGCAAAGAAAGAGTCC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGAATGGTTTTGCAGCCATCTTGTGAGTTAGGCAAAGAAAGAGTCC  249

seq1  TGTTACAACAACAAGAGCCCATGTCACAGCAACTGGTGATGGGCAAAGCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACAACAACAAGAGCCCATGTCACAGCAACTGGTGATGGGCAAAGCC  299

seq1  AGGTCTTAGGCACACGGCAGCTCAAGCCCGTAGGACACAGGCCCGTTCCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTTAGGCACACGGCAGCTCAAGCCCGTAGGACACAGGCCCGTTCCC  349

seq1  CCACCTTTCCAAACTCCCTTTGGGTTTATTTCTTCCCAGTAGGAAAGCTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTTTCCAAACTCCCTTTGGGTTTATTTCTTCCCAGTAGGAAAGCTT  399

seq1  GTGGTCTTGTCACCGGAAGTCCTGTCAGAGACAGAGTCATCTTCATCAAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCTTGTCACCGGAAGTCCTGTCAGAGACAGAGTCATCTTCATCAAC  449

seq1  CAGCCCTATTATCTTCTTGTCTCTCGCTGGCAGCTCCTAGGGTACAGGCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCTATTATCTTCTTGTCTCTCGCTGGCAGCTCCTAGGGTACAGGCT  499

seq1  GGCCTGCTGGATTTCTTGCTGTTTGGGAGTCTCATCTCAGCAGTGGACCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGCTGGATTTCTTGCTGTTTGGGAGTCTCATCTCAGCAGTGGACCC  549

seq1  TGTGGCCGTGTTGGCCGTCTTTGAGGAGGTGCATGTCAATCAGACCCTCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCCGTGTTGGCCGTCTTTGAGGAGGTGCATGTCAATCAGACCCTCT  599

seq1  TTATCATCATCTTCGGCGAGTCTCTGCTCAATGATGCAGTAACTGTGGTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCATCATCTTCGGCGAGTCTCTGCTCAATGATGCAGTAACTGTGGTA  649

seq1  AGAACATCTGGTGGCTTGCTGACCCCTGACCTTAGGCGTGACCGGGCTTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATCTGGTGGCTTGCTGACCCCTGACCTTAGGCGTGACCGGGCTTA  699

seq1  GACCTTTCCTCCTAGTCCCCTGGGGAGGAAATGTCTGAGCTTTCTTCTGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTTCCTCCTAGTCCCCTGGGGAGGAAATGTCTGAGCTTTCTTCTGT  749

seq1  TCCCGCCCACTTCCCCCGTATGGCCCCCTCCTACTTCCTGTCTCCCCTCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGCCCACTTCCCCCGTATGGCCCCCTCCTACTTCCTGTCTCCCCTCT  799

seq1  TGTCACTCAGGTGCTGTACAAGGTCTGCAACTCCTTTGTGGAGATGGGCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTCAGGTGCTGTACAAGGTCTGCAACTCCTTTGTGGAGATGGGCT  849

seq1  CTGCCAACGTGCAGGCCACTGACTACCTAAAGGGCGTCGGTCAGTATTTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAACGTGCAGGCCACTGACTACCTAAAGGGCGTCGGTCAGTATTTC  899

seq1  CCCCAACTTGGCCTGCATTCAATGTCTGCCTTCTCTGGATTGTTGCGACT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAACTTGGCCTGCATTCAATGTCTGCCTTCTCTGGATTGTTGCGACT  949

seq1  CACCCAGCCAGCGTTTGGGACAGAGGAGGCTATTCCGATGTCTCATTCCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGCCAGCGTTTGGGACAGAGGAGGCTATTCCGATGTCTCATTCCT  999

seq1  TCCTCTCCTCTATGGAGAAATGGGGTCTGGGAGGAGCTTGCCTTGGAATT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCCTCTATGGAGAAATGGGGTCTGGGAGGAGCTTGCCTTGGAATT  1049

seq1  C  1049
      |
seq2  C  1050