BAC Information

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BAC

Clone NameB6Ng01-339I24
Chromosome8 (Build37)
Map Location 77,775,115 - 77,899,296
singlet/doubletdoublet
Overlap geneLOC675507
Upstream geneIsx, Hmgb2l1, Tom1, LOC100039134, Hmox1, Mcm5, Rasd2
Downstream geneLOC384845, LOC666211, LOC100039229, 1700007B14Rik, LOC666036, LOC100039185, EG631594
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339I24.bB6Ng01-339I24.g
ACCGA123528GA123529
length638607
definitionB6Ng01-339I24.b B6Ng01-339I24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,775,115 - 77,775,750)(77,898,646 - 77,899,296)
sequence
gaattcagtcttaactccatttctttctttacccgcctagattccctctt
tttcagttccaagatgcatcccaggcttgaacccagacatgagagccaca
ggccggccccaacagggaatcccatagaaaatgaccaaactctattgtag
gagttcaaggtcaatattccctagccgacttatcatagcttctgttaaac
tacttacttctgtgaatgcccactgcatctgatgagcaagataccaagat
gtggattttgccttcaaaactcagtgccctggacacctggggctacacct
gggtccctaaatacccaagtgtagtcccagccagctggaacaaagacttt
caattgggtgtaaactgtgtctgaatgatcatttctggttggatccctgt
tacaatagctcacttgccaaacttgccagaagaagtaggacaaactaaga
aaaggtttctatgtttttaaggtgtgtgtgtgtgtgtgtgtgtctgtgtg
tgtgtgtctgtgtgtgttgctgtggactggccccaaggccttgtacaggt
taggctagtttttccaacaccctgctcatcatctttataggttttgttaa
aaagaaaagaatgaaagtaaaataacatataggcataa

gaattccttaagccacgtttctgtcatgagcagctgatgatggctatgga
aattcacctgttctgctggtctgcctctaatttctgaagcactgaagcaa
ctgaaaagtatccatgtgctactgaaacctccggtgtgaagtcgaccctt
tacagtcaactgtgtacctctacatgagtctcagacttctcaaatgttga
attggtgaggggaagagatagaaagaataaaaagacttaggggcagggaa
cctgaaagagaattattgtccttgactcaaatcaggaaatggcctttgtt
ctggcctggccaaaggcagaaaaaaaatgctagcaggggtagctccaatt
tctaaatgagcacttcaacctagaggctaggtgagcatggagaggaagtt
gcaggacaggcaccacagtcttctagcaaacagctttggagatggacttt
tggattatcatggaacaaacaagttatatctgttccccaatttcaaccta
tttcctcaattattttaggcccttaattcttggtggggggtgggtaatgg
tggccttctagaacatcagagatggctaccagagctctgttttatgctta
ataaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_77775115_77775750
seq2: B6Ng01-339I24.b_50_687

seq1  GAATTCAGTCTTAACTCCATTTCTTTCTTTACCCGCCTAGATTCCCTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCTTAACTCCATTTCTTTCTTTACCCGCCTAGATTCCCTCTT  50

seq1  TTTCAGTTCCAAGATGCATCCCAGGCTTGAACCCAGACATGAGAGCCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTTCCAAGATGCATCCCAGGCTTGAACCCAGACATGAGAGCCACA  100

seq1  GGCCGGCCCCAACAGGGAATCCCATAGAAAATGACCAAACTCTATTGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGGCCCCAACAGGGAATCCCATAGAAAATGACCAAACTCTATTGTAG  150

seq1  GAGTTCAAGGTCAATATTCCCTAGCCGACTTATCATAGCTTCTGTTAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCAAGGTCAATATTCCCTAGCCGACTTATCATAGCTTCTGTTAAAC  200

seq1  TACTTACTTCTGTGAATGCCCACTGCATCTGATGAGCAAGATACCAAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTACTTCTGTGAATGCCCACTGCATCTGATGAGCAAGATACCAAGAT  250

seq1  GTGGATTTTGCCTTCAAAACTCAGTGCCCTGGACACCTGGGGCTACACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATTTTGCCTTCAAAACTCAGTGCCCTGGACACCTGGGGCTACACCT  300

seq1  GGGTCCCTAAATACCCAAGTGTAGTCCCAGCCAGCTGGAACAAAGACTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCCTAAATACCCAAGTGTAGTCCCAGCCAGCTGGAACAAAGACTTT  350

seq1  CAATTGGGTGTAAACTGTGTCTGAATGATCATTTCTGGTTGGATCCCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGGGTGTAAACTGTGTCTGAATGATCATTTCTGGTTGGATCCCTGT  400

seq1  TACAATAGCTCACTTGCCAAACTTGCCAGAAGAAGTAGGACAAACTAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATAGCTCACTTGCCAAACTTGCCAGAAGAAGTAGGACAAACTAAGA  450

seq1  AAAGGTTTCTATGTTTTTAAGGTGTGTGTGTGTGTGTGTGTGTCTGTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTTTCTATGTTTTTAAGGTGTGTGTGTGTGTGTGTGTGTCTGTGTG  500

seq1  TGTGTGTCTGTGTGTGTTGCTGTGGACTGGCCCCAAGGCCTTGTACAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTCTGTGTGTGTTGCTGTGGACTGGCCCCAAGGCCTTGTACAGGT  550

seq1  TAGGCTAG-TTTTCCAACA-CCTGCTCATCATCTTTAAAGGTTTTGTTAA  598
      |||||||| |||||||||| ||||||||||||||||| ||||||||||||
seq2  TAGGCTAGTTTTTCCAACACCCTGCTCATCATCTTTATAGGTTTTGTTAA  600

seq1  AAAGAAAAGAATGAAAGTAAAAGAACACATAGGCATAA  636
      |||||||||||||||||||||| |||| ||||||||||
seq2  AAAGAAAAGAATGAAAGTAAAATAACATATAGGCATAA  638


seq1: chr8_77898646_77899296
seq2: B6Ng01-339I24.g_66_717 (reverse)

seq1  GGCCAAAGGTAGATTGGATTCTTTTGTCCAGGAAGGAATAATGTCTCTTT  50
      ||||||||||||||||||||||||||||                 |||||
seq2  GGCCAAAGGTAGATTGGATTCTTTTGTCNNNNNNNNNNNNNNNNNTCTTT  50

seq1  ATTAAGCAT-AAACAGAGCTCTGGTAGCCATCTCTGATGTTCTAGAAGGC  99
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGCATAAAACAGAGCTCTGGTAGCCATCTCTGATGTTCTAGAAGGC  100

seq1  CACCATTACCCACCCCCCACCAAGAATTAAGGGCCTAAAATAATTGAGGA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATTACCCACCCCCCACCAAGAATTAAGGGCCTAAAATAATTGAGGA  150

seq1  AATAGGTTGAAATTGGGGAACAGATATAACTTGTTTGTTCCATGATAATC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGTTGAAATTGGGGAACAGATATAACTTGTTTGTTCCATGATAATC  200

seq1  CAAAAGTCCATCTCCAAAGCTGTTTGCTAGAAGACTGTGGTGCCTGTCCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGTCCATCTCCAAAGCTGTTTGCTAGAAGACTGTGGTGCCTGTCCT  250

seq1  GCAACTTCCTCTCCATGCTCACCTAGCCTCTAGGTTGAAGTGCTCATTTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTTCCTCTCCATGCTCACCTAGCCTCTAGGTTGAAGTGCTCATTTA  300

seq1  GAAATTGGAGCTACCCCTGCTAGCATTTTTTTTCTGCCTTTGGCCAGGCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTGGAGCTACCCCTGCTAGCATTTTTTTTCTGCCTTTGGCCAGGCC  350

seq1  AGAACAAAGGCCATTTCCTGATTTGAGTCAAGGACAATAATTCTCTTTCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAAAGGCCATTTCCTGATTTGAGTCAAGGACAATAATTCTCTTTCA  400

seq1  GGTTCCCTGCCCCTAAGTCTTTTTATTCTTTCTATCTCTTCCCCTCACCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCCTGCCCCTAAGTCTTTTTATTCTTTCTATCTCTTCCCCTCACCA  450

seq1  ATTCAACATTTGAGAAGTCTGAGACTCATGTAGAGGTACACAGTTGACTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAACATTTGAGAAGTCTGAGACTCATGTAGAGGTACACAGTTGACTG  500

seq1  TAAAGGGTCGACTTCACACCGGAGGTTTCAGTAGCACATGGATACTTTTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGGTCGACTTCACACCGGAGGTTTCAGTAGCACATGGATACTTTTC  550

seq1  AGTTGCTTCAGTGCTTCAGAAATTAGAGGCAGACCAGCAGAACAGGTGAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCTTCAGTGCTTCAGAAATTAGAGGCAGACCAGCAGAACAGGTGAA  600

seq1  TTTCCATAGCCATCATCAGCTGCTCATGACAGAAACGTGGCTTAAGGAAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATAGCCATCATCAGCTGCTCATGACAGAAACGTGGCTTAAGGAAT  650

seq1  TC  651
      ||
seq2  TC  652


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