BAC Information

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BAC

Clone NameB6Ng01-339K10
Chromosome8 (Build37)
Map Location 87,457,356 - 87,458,473
singlet/doubletsinglet
Overlap geneMast1
Upstream geneLphn1, Asf1b, Prkaca, Samd1, 1700067K01Rik, 2210011C24Rik, 4432412L15Rik, Il27ra, Rln3, C330011M18Rik, Rfx1, BC057552, LOC100039920, Podnl1, Cc2d1a, 4930432K21Rik, Nanos3, Zswim4, D8Ertd738e, 2410018C20Rik, Ccdc130, Cacna1a, Ier2, LOC100039975, Btbd14b, Trmt1, LOC100039997, Lyl1, Nfix, Dand5, Gadd45gip1, Rad23a, Calr, LOC546080, Farsa, Syce2, Gcdh, Klf1, Dnase2a
Downstream geneRtbdn, Rnaseh2a, LOC666841, Prdx2, Junb, Hook2, Best2, Asna1, 2310036O22Rik, Tnpo2, Fbxw9, EG436049, Dhps, 1500041N16Rik, BC056474, Man2b1, EG244556, EG624855, Olfr371, Vps35, Orc6l, D830007F02Rik, 4921524J17Rik, Gpt2, Dnaja2, Neto2, Itfg1, LOC100040798, Phkb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339K10.bB6Ng01-339K10.g
ACCGA123588GA123589
length1,1721,119
definitionB6Ng01-339K10.b B6Ng01-339K10.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgtgccccatttttaatagggttatttagttt
tctggaatccaacttcttgagttctttatgtatattggatattagccccc
tatcagatttagggttagtaaagatcttttcccaatctgttggttgatgt
tttgtcatattgactgtgtcctttgccttacagaagttttgcaattttat
gaggtcccatgtgtcaattcttgatcttacagcacaagccattgctgttc
tgttcaggaatttttcccctgtgctcatatcttcgaggctctcccccact
ttctcctctataagtttcatagtttctggtttcatgtggagttccttgat
ccacttagactcgagctttgtacaaggagataagaatggatcaatttgca
ttcttctgcttgctaaccaccagttgaaccagcaccatttgttgaaaatg
ctgtcttctttccactggatggttttagctcctttgtcaaagatcaagtg
accataagtgtggggttcatttctgggtcttcaattatattccgttgatc
tacctgtctgtcactgtaccagtaccatgcagtttttattacaattgctc
tgtagtatggcttgaggtcagggatggtgattccaccagaggttctttta
ttgttgagaatagttttgctatcctaggtttttttgttattccaaatgaa
tttgcaaattgtccttttcagaccaatttcccttatgaatatcgatgcaa
aaatactcaataaaattctcgcaaaccaaatccaagaacacatcaaacca
atcatccatcatgatcaagtaggcttcattgaaccatcaagtagggatgg
tttcaatatacagaaatccatcaacgtaatccactatataaacaaactca
aagacaaaaccacatgaccatctcattagatgcaagaaaaagcattggcc
aaaatccaacacctattcatgataaaagtattgggaaagaccaggaattc
agacccatatctaaacatattaaaagcaatatacagtgtctttctatttc
tgcacaaaacattctatgactagaagcagttgggcacgaaagggtttatc
ggctacactcatatcttgctgtactcactaaggaagttcagaacctgacc
tcaagccaggttcagaagagag
gaattccaggacagccaaggctacacagagaaaccctgtcttggaaaaga
aagaaggaaggaaaggaagaaagaaagaaagaaagaaagaaagaaagaaa
gaaagaaagaaagaaagaagaaagaaagaaagaaagaaagaaagaaagaa
agaaagaaagaaagaaagaaagaaagaaagaaaggaaggaaggaaggaag
ttccacttctcggtcccacactcatgactcttcactaaggcagttgtgtg
tccatagcctcagcacgtgaaccggaacattgtgctctcacacacatcaa
tgtgtaaccacatgccaagcaccaccacacagaaatacacatgagagcaa
gacccgcactgacacacagtctgacagacacacagacagccgcacagaca
cacagacagccacacattgactcacgcgcccgccctatgctttcatcttc
atgcagctacacatccgagactctcattcattgtcagacagtcaaactcc
cacacagctacacactcatccagtcatgctgatgcccacacccattgatg
cacatagaccagaactccctcacacacattattatgtcacagacaacaca
cactcacatcacatacattcccactcacacagggccacaaattcagccag
tcacactgacacccattcattaatgcgctcaggcacaagctcacacacac
acacacacacacacacacacacacacacacacacgcacacacacacgttc
ccactcccacacaggctgcacgtgcctcagagatgcagaagtgggggtgt
ctgcctttaacttacaaacccacagtacacacagatttcgcatcccaatg
catgtgcctgtcactacacttgaacacgcccacgctggcattcagatggc
tggtcttgtagacacaccacctgatagggtgcgctctggcctcttttcta
caacaggacaaatgcggagtcacttcttggctcacactttccttcaagct
taagttctacttatggtgttggaaggactttcccctccccttcaggaagc
ttatccccatcgcctcctacaggcttcatcaatacttgcaatgacccttg
aacctctttttaactgcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_87457356_87458473
seq2: B6Ng01-339K10.g_66_1184

seq1  GAATTCCAGGACAGCCAAGGCTACACAGAGAAACCCTGTCTTGGAAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAAGGCTACACAGAGAAACCCTGTCTTGGAAAAGA  50

seq1  AAGAAGGAAGGAAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGAAGGAAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  100

seq1  GAAAGAAAGAAAGAAAGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA  150
      |||||||||||||||||        |||||||||||||||||||||||||
seq2  GAAAGAAAGAAAGAAAG--------AAGAAAGAAAGAAAGAAAGAAAGAA  142

seq1  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAG  192

seq1  GAAGGAAGTTCCACTTCTCGGTCCCACACTCATGACTCTTCACTAAGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAGTTCCACTTCTCGGTCCCACACTCATGACTCTTCACTAAGGCA  242

seq1  GTTGTGTGTCCATAGCCTCAGCACGTGAACCGGAACATTGTGCTCTCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGTGTCCATAGCCTCAGCACGTGAACCGGAACATTGTGCTCTCACA  292

seq1  CACATCAATGTGTAACCACATGCCAAGCACCACCACACAGAAATACACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCAATGTGTAACCACATGCCAAGCACCACCACACAGAAATACACAT  342

seq1  GAGAGCAAGACCCGCACTGACACACAGTCTGACAGACACACAGACAGCCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCAAGACCCGCACTGACACACAGTCTGACAGACACACAGACAGCCG  392

seq1  CACAGACACACAGACAGCCACACATTGACTCACGCGCCCGCCCTATGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACACACAGACAGCCACACATTGACTCACGCGCCCGCCCTATGCTT  442

seq1  TCATCTTCATGCAGCTACACATCCGAGACTCTCATTCATTGTCAGACAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTCATGCAGCTACACATCCGAGACTCTCATTCATTGTCAGACAGT  492

seq1  CAAACTCCCACACAGCTACACACTCATCCAGTCATGCTGATGCCCACACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCCCACACAGCTACACACTCATCCAGTCATGCTGATGCCCACACC  542

seq1  CATTGATGCACATAGACCAGAACTCCCTCACACACATTATTATGTCACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGATGCACATAGACCAGAACTCCCTCACACACATTATTATGTCACAG  592

seq1  ACAACACACACTCACATCACATACATTCCCACTCACACAGGGCCACAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACACACACTCACATCACATACATTCCCACTCACACAGGGCCACAAAT  642

seq1  TCAGCCAGTCACACTGACACCCATTCATTAATGCGCTCAGGCACAAGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCAGTCACACTGACACCCATTCATTAATGCGCTCAGGCACAAGCTC  692

seq1  ACACACACACACACACACACACACACACACACACACACACACGCACACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACACACACGCACACAC  742

seq1  ACACGTTCCCACTCCCACACAGGCTGCACGTGCCTCAGAGATGCAGAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGTTCCCACTCCCACACAGGCTGCACGTGCCTCAGAGATGCAGAAGT  792

seq1  GGGGGTGTCTGCCTTTAACTTACAAACCCACAGTACACACAGA-TTCGCA  849
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGGGGTGTCTGCCTTTAACTTACAAACCCACAGTACACACAGATTTCGCA  842

seq1  TCCCAATGCATGTGCCTGTCACTACACTTGAACACGCCCACGCTGGCATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAATGCATGTGCCTGTCACTACACTTGAACACGCCCACGCTGGCATT  892

seq1  CAGATGGCTGGTCTTGTAGACACACCACCTGATAGGGTGCGCTCTGGCCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGGCTGGTCTTGTAGACACACCACCTGATAGGGTGCGCTCTGGCCT  942

seq1  C-TTTCTAC-ACAGGACAAATGCGGAGTCAC-TCTTGGCTCCACAC-TTC  995
      | ||||||| ||||||||||||||||||||| |||||||| ||||| |||
seq2  CTTTTCTACAACAGGACAAATGCGGAGTCACTTCTTGGCT-CACACTTTC  991

seq1  CTTC-AGC-TAAGTTCTAC-TAT-GTGTTGGAAGGACTTCCCCTCCCCCT  1041
      |||| ||| |||||||||| ||| ||||||||||||||| |||  |||||
seq2  CTTCAAGCTTAAGTTCTACTTATGGTGTTGGAAGGACTTTCCCCTCCCCT  1041

seq1  CCAGGAAGCTATTCCCCATCGCCTCCTACAGCCTTCATCAATACTTGCAA  1091
       |||||||||  ||||||||||||||||||| ||||||||||||||||||
seq2  TCAGGAAGCTTATCCCCATCGCCTCCTACAGGCTTCATCAATACTTGCAA  1091

seq1  TGACCCCTG-ACCTCTTTTTTACTGCCT  1118
      |||||| || |||||||||| |||||||
seq2  TGACCCTTGAACCTCTTTTTAACTGCCT  1119