BAC Information

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BAC

Clone NameB6Ng01-339L20
Chromosome8 (Build37)
Map Location 111,848,967 - 111,985,500
singlet/doubletdoublet
Overlap geneGm1943, LOC100042829
Upstream geneAtbf1, 4922502B01Rik
Downstream genePmfbp1, Dhx38, Txnl4b, Hp, Dhodh, Pkd1l3, 2400003C14Rik, 4930566A11Rik, D8Ertd587e, LOC668089, LOC672735, Ap1g1, Phlppl, Marveld3, LOC100041884, Tat, Chst4, Zfp612, Gm1467, Calb2, BC025546, Hydin, LOC672398
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339L20.bB6Ng01-339L20.g
ACCGA123650GA123651
length1,102789
definitionB6Ng01-339L20.b B6Ng01-339L20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,848,967 - 111,850,066)(111,984,713 - 111,985,500)
sequence
gaattctcatcgttgcttcaggactgacagactgggtgacttccagctga
tctccaggccttctgtaaaaggaaggcattgttctataaaggtctctttg
gaagagtctcttctgttttattgccctgttcatttaacagagaagtaagc
ataaacgggtctacataaagaaaccggagcctgagcaggaagatcgagac
cagcctgggcttcatatacagcaggaaccagactggcatttaggatctaa
atgtgtaaataaggtttcagaggtctcaaaggtgccgtttggtcacagac
tgtgatatttgctttcggccgtgtgcttctcacttcttcacaggccaaca
ccaacatgttggaaagtcaaaggggagcagatctccaaatggcattttag
aacttgggagaatagacactaaaatatagaaatgaacaaaaaaaaaaaaa
tagagtagccattcatattctaagtttaaaaaaaatgaaactttagggat
aaagctaaatcctcgagttcaccatccctctgcccacttctccttttttt
tttttttttttttttgctatctagagataagagctagaatttgtttaaaa
tctatgcttcaaatgtgggcctggtagcgcacacacctttagtctcagtg
ctcgggaggcagaggcaggcggatctctgagtttgaggccagtctggtct
acagagtaagtcccagtacagccagagctacagagtaagactctatcttt
aaataaataaataaataagaggccctgccaaagccttacaaacacagaga
cggatggatgcttgcagtcaaccattggactgagcatggggtctctaata
gaggagttagaggaaaggaccaaagaagctgaaagggtttgcaaccccac
aggaagaaacaacaataatcaacccaaccagtccccagagcttcagggtg
aaagatcctgacagaatgtaaaagtcacagaagcccttgaaaatggcaaa
ataagaattttattgctagcagactagcttccactgatttagaaaaatag
aggtgcacattgctctgccgcctcctgactgtgtgttctggcatgttctg
ac
gaattcccggctgccccaactttctatggatactaccatcagatacatat
tacagatgataccctgagaacgtctggttgctattgagatgtgtcagcat
ctgatatgagttaacctgatgggttggccccagtcaggaggtgcatagtc
cggcatggcaaagtctctctggcctccaggaccaactaacgcctgagctc
ttagggcatcggtgatggccaatcctaaaagaggatttggaaatggatgc
tgttgagcttcttggttgttcaaatgactggggaggggcagccaacattt
gctctcctccaagcagtgacattaaccatccatcagtgagtagacagctc
cacaggaaggtcggtgttcttcaagtgggaggggatatttaggagtgtgg
gcttaatgtgttaaagaaagacaaagatggggcctggaagatagtcactc
ggtaaagtgcttgacctgaaatcagtcctcagaactaacataactccaag
tctgggaatgttagtgtgtacttgtcatcccgtactggaggtagaaatag
agcctactctattgatccctagagcctactctacttggagtattgggctc
tagtgcagtgccaaaggatgacactgaaggctgtcccctcctctctactc
acacacatatgtgaaagccaccctgatcacacacatgaaagccaccccga
gagatgagaccaaaagaagtcctacggagactaaaagacagtctccacat
cagaaagggccatcagggaagaggggggaggggaagggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_111848967_111850066
seq2: B6Ng01-339L20.b_47_1148

seq1  GAATTCTCATCGTTGCTTCAGGACTGACAGACTGGGTGACTTCCAGCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATCGTTGCTTCAGGACTGACAGACTGGGTGACTTCCAGCTGA  50

seq1  TCTCCAGGCCTTCTGTAAAAGGAAGGCATTGTTCTATAAAGGTCTCTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGGCCTTCTGTAAAAGGAAGGCATTGTTCTATAAAGGTCTCTTTG  100

seq1  GAAGAGTCTCTTCTGTTTTATTGCCCTGTTCATTTAACAGAGAAGTAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTCTCTTCTGTTTTATTGCCCTGTTCATTTAACAGAGAAGTAAGC  150

seq1  ATAAACGGGTCTACATAAAGAAACCGGAGCCTGAGCAGGAAGATCGAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACGGGTCTACATAAAGAAACCGGAGCCTGAGCAGGAAGATCGAGAC  200

seq1  CAGCCTGGGCTTCATATACAGCAGGAACCAGACTGGCATTTAGGATCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGGGCTTCATATACAGCAGGAACCAGACTGGCATTTAGGATCTAA  250

seq1  ATGTGTAAATAAGGTTTCAGAGGTCTCAAAGGTGCCGTTTGGTCACAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTAAATAAGGTTTCAGAGGTCTCAAAGGTGCCGTTTGGTCACAGAC  300

seq1  TGTGATATTTGCTTTCGGCCGTGTGCTTCTCACTTCTTCACAGGCCAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATATTTGCTTTCGGCCGTGTGCTTCTCACTTCTTCACAGGCCAACA  350

seq1  CCAACATGTTGGAAAGTCAAAGGGGAGCAGATCTCCAAATGGCATTTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACATGTTGGAAAGTCAAAGGGGAGCAGATCTCCAAATGGCATTTTAG  400

seq1  AACTTGGGAGAATAGACACTAAAATATAGAAATGAACAAAAAAAAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGGGAGAATAGACACTAAAATATAGAAATGAACAAAAAAAAAAAAA  450

seq1  TAGAGTAGCCATTCATATTCTAAGTTTAAAAAAAATGAAACTTTAGGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTAGCCATTCATATTCTAAGTTTAAAAAAAATGAAACTTTAGGGAT  500

seq1  AAAGCTAAATCCTCGAGTTCACCATCCCTCTGCCCACTTCTCCTTTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTAAATCCTCGAGTTCACCATCCCTCTGCCCACTTCTCCTTTTTTT  550

seq1  TTTTTTTTTTTTTTTGCTATCTAGAGATAAGAGCTAGAATTTGTTTAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTGCTATCTAGAGATAAGAGCTAGAATTTGTTTAAAA  600

seq1  TCTATGCTTCAAATGTGGGCCTGGTAGCGCACACACCTTTAGTCTCAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGCTTCAAATGTGGGCCTGGTAGCGCACACACCTTTAGTCTCAGTG  650

seq1  CTCGGGAGGCAGAGGCAGGCGGATCTCTGAGTTTGAGGCCAGTCTGGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGGAGGCAGAGGCAGGCGGATCTCTGAGTTTGAGGCCAGTCTGGTCT  700

seq1  ACAGAGTAAGTCCCAGTACAGCCAGAGCTACAGAGTAAGACTCTATCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTAAGTCCCAGTACAGCCAGAGCTACAGAGTAAGACTCTATCTTT  750

seq1  AAATAAATAAATAAATAAGAGGCCCTGCCAAAGCCTTACAAACACAGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATAAATAAATAAGAGGCCCTGCCAAAGCCTTACAAACACAGAGA  800

seq1  CGGATGGATGCTTGCAGTCAACCATTGGACTGAGCATGGGGTCTCTAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATGGATGCTTGCAGTCAACCATTGGACTGAGCATGGGGTCTCTAATA  850

seq1  GAGGAGTTAGA-GAAAGGACCAAAGAAGCTGAAGGGGTTTGCAACCCCAC  899
      ||||||||||| ||||||||||||||||||||| ||||||||||||||||
seq2  GAGGAGTTAGAGGAAAGGACCAAAGAAGCTGAAAGGGTTTGCAACCCCAC  900

seq1  AGGAAG-AACAACAAT-ATCAA-CCAACCAGTCCCCAAGAGCTTCAGGGT  946
      |||||| ||||||||| ||||| ||||||||||||| |||||||||||||
seq2  AGGAAGAAACAACAATAATCAACCCAACCAGTCCCC-AGAGCTTCAGGGT  949

seq1  GAAAGATCCTGACAGAATGTAAAAGGTCACAGAAGCCC-TGAAATTGGCA  995
      |||||||||||||||||||||||| ||||||||||||| ||||| |||||
seq2  GAAAGATCCTGACAGAATGTAAAA-GTCACAGAAGCCCTTGAAAATGGCA  998

seq1  AAATA--GATTTTATTGCTAGCAGAACTAGCTT-CACTGATTTAGAAAAA  1042
      |||||   |||||||||||||||| |||||||| ||||||||||||||||
seq2  AAATAAGAATTTTATTGCTAGCAG-ACTAGCTTCCACTGATTTAGAAAAA  1047

seq1  TAGAGGTGCACAATGCTCTGGCCGCTCCTTGAACCTGTGTG-TCTGCCAA  1091
      |||||||||||| |||||| |||||  | |||  ||||||| |||| | |
seq2  TAGAGGTGCACATTGCTCT-GCCGCCTCCTGA--CTGTGTGTTCTGGC-A  1093

seq1  TGTTCTGAC  1100
      |||||||||
seq2  TGTTCTGAC  1102

seq1: chr8_111984713_111985500
seq2: B6Ng01-339L20.g_68_856 (reverse)

seq1  CCCCTTCCCCT-CCCCCTCTTCCCTGATGGCCCTTTCTGATGTGGAGACT  49
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTCCCCTCCCCCCTCTTCCCTGATGGCCCTTTCTGATGTGGAGACT  50

seq1  GTCTTTTAGTCTCCGTAGGACTTCTTTTGGTCTCATCTCTCGGGGTGGCT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTAGTCTCCGTAGGACTTCTTTTGGTCTCATCTCTCGGGGTGGCT  100

seq1  TTCATGTGTGTGATCAGGGTGGCTTTCACATATGTGTGTGAGTAGAGAGG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTGTGTGATCAGGGTGGCTTTCACATATGTGTGTGAGTAGAGAGG  150

seq1  AGGGGACAGCCTTCAGTGTCATCCTTTGGCACTGCACTAGGGCCCAATAC  199
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGGGGACAGCCTTCAGTGTCATCCTTTGGCACTGCACTAGAGCCCAATAC  200

seq1  TCCAAGTAGAGTAGGCTCTAGGGATCAATAGAGTAGGCTCTATTTCTACC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGTAGAGTAGGCTCTAGGGATCAATAGAGTAGGCTCTATTTCTACC  250

seq1  TCCAGTACGGGATGACAAGTACACACTAACATTCCCAGACTTGGAGTTAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTACGGGATGACAAGTACACACTAACATTCCCAGACTTGGAGTTAT  300

seq1  GTTAGTTCTGAGGACTGATTTCAGGTCAAGCACTTTACCGAGTGACTATC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTTCTGAGGACTGATTTCAGGTCAAGCACTTTACCGAGTGACTATC  350

seq1  TTCCAGGCCCCATCTTTGTCTTTCTTTAACACATTAAGCCCACACTCCTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGCCCCATCTTTGTCTTTCTTTAACACATTAAGCCCACACTCCTA  400

seq1  AATATCCCCTCCCACTTGAAGAACACCGACCTTCCTGTGGAGCTGTCTAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCCCCTCCCACTTGAAGAACACCGACCTTCCTGTGGAGCTGTCTAC  450

seq1  TCACTGATGGATGGTTAATGTCACTGCTTGGAGGAGAGCAAATGTTGGCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGATGGATGGTTAATGTCACTGCTTGGAGGAGAGCAAATGTTGGCT  500

seq1  GCCCCTCCCCAGTCATTTGAACAACCAAGAAGCTCAACAGCATCCATTTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTCCCCAGTCATTTGAACAACCAAGAAGCTCAACAGCATCCATTTC  550

seq1  CAAATCCTCTTTTAGGATTGGCCATCACCGATGCCCTAAGAGCTCAGGCG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCTCTTTTAGGATTGGCCATCACCGATGCCCTAAGAGCTCAGGCG  600

seq1  TTAGTTGGTCCTGGAGGCCAGAGAGACTTTGCCATGCCGGACTATGCACC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTGGTCCTGGAGGCCAGAGAGACTTTGCCATGCCGGACTATGCACC  650

seq1  TCCTGACTGGGGCCAACCCATCAGGTTAACTCATATCAGATGCTGACACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGACTGGGGCCAACCCATCAGGTTAACTCATATCAGATGCTGACACA  700

seq1  TCTCAATAGCAACCAGACGTTCTCAGGGTATCATCTGTAATATGTATCTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAATAGCAACCAGACGTTCTCAGGGTATCATCTGTAATATGTATCTG  750

seq1  ATGGTAGTATCCATAGAAAGTTGGGGCAGCCGGGAATTC  788
      |||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAGTATCCATAGAAAGTTGGGGCAGCCGGGAATTC  789