BAC Information

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BAC

Clone NameB6Ng01-340A20
Chromosome8 (Build37)
Map Location 110,128,415 - 110,242,670
singlet/doubletdoublet
Overlap geneLOC100041744, LOC668038
Upstream geneCdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b, LOC100042791, Nfat5, Nqo1, Nob1, Wwp2, LOC100042812, Psmd7
Downstream geneAtbf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340A20.bB6Ng01-340A20.g
ACCGA123875GA123876
length1,0621,217
definitionB6Ng01-340A20.b B6Ng01-340A20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,128,415 - 110,129,473)(110,241,459 - 110,242,670)
sequence
gaattcatccattggaggctgcaaaccagatttggctgaaatgtgcatat
ttagcctatgttaactcataaattggataaatacgttatgctaaactgca
ctgagtaaatattgagtatgcaaaacactcttgtaggtgtctcaaacaca
gagaatatagaatctagattctcctctgtgaaagtgatgagtacagctcc
tgccctgtgggaaggttggaatagggatgggagactatggaacagggaaa
cgccaggcaagggaatggggaagtggctttggtaaagagcctgggacatc
agtggctggcattcaatagaccagcaacgcaaacagcactgtgtgcttct
ggggaaattgaacgaagcttctcaaaaaataaaatctgatttgctctgtt
tctttcttttttcattttttttcagtatgtgatgtttctttatttccaag
tttattattattattattaggtattttcctcgtttacattttcaatgcta
tcccaaaggtcccccatacccacccccccttttttcatttttgttacgaa
gtgtttaatacaccgtgaagcgtgtgtgtgtaagatcaagaagaaaacga
aaatctcttttcttccagtgagatgcagaatcttacaaacccctctgaac
accctgtggctcatagctccttcctgcctaccccagtacttcaaattaat
attatttcacccaggtgcaaaatataggaatttctggattggccaagatc
tgcaacttttattcttacctttggttggatccatgagaaatgaaatgaag
aaatatgttgtgcttgcctggtatgctatgattacatagtgtgtgtgtgt
gtgtgtgtgtgtgtgtacacatgtgcacacatacacacacacacacacac
acacacacacacacacacacactcataagggatgggggtcagaagcaaag
ggagttcccaaagaatccaagtcaaattaacttaatagaggagaagttcc
atttacctcatattttatttattcgttttgtttagaattacaagccatgt
ctggcttctgta
gaattcagttcccagagtccacgtggttgttcacgatcatccataagtcc
tgtaccaggtcctgtaccaggcgggtatctgatgcccatctctggcctcc
atgggcaccatacatacatgtgatgcacagacacacacacacaagcaaaa
catccacacatatataagaaaatgactttttaaaagaggtcatccagtat
ttcaggtcttaaattctagggtgtggcacccatttcaagcttgagttcaa
atcctcatcccaccacttgaacaagaagacagctccaccatgaccatcta
ctgctgaactcagggtaggaaggagggagagtcagcccatgtgtggtgct
attttacacctctctagctatatctgcttttgtcctttctggagactaaa
atcataatacaatggacttaaacaaatacccagcactggccagcttctgg
atcatttgacatttctatcactggcacaaaattaaagagttataataaaa
atccgaagcctgggactgagcaatttaactcttttttaatgatagcgagc
cgcacacacctgaccagcaatataaaatacgaagatcaaagcggaaacac
agaaacgctcagagagtcctaatggccccaaggaacgtgctgatttaaca
gactgtaatgttcgccagagaacatgacaagaatccaatgctcgaaacag
caaaagccaatcttctatttgtttaacccactgacaatttctctggtctc
gatagtgactgtctaagtcttcagcagtgaaaatgtaattaagatatgct
aatatcggacaagaaagggctacgagtggggatagagaaatattcgcgtg
ccacagggatgggtaataatatgtagacttgggaggatcatgcccccacc
ccccagagacaggatgtcacggtactatacaagacctggaaaaaaaatgt
ctctgttttcagtgaaaccataaatcaaaagtttaagagacgctgttgag
atggctcagttggttaggggagcttggtggcttcttccagagttcctgaa
attcagatctagcactccacgtgggggggtgcctcatgactgtctgtgac
tgtagcttcaaggaatccagcaaccttctgggtcccatcaggttcccaca
cattgcacacagcattacctccacaggaaacgcataaagtccaattgact
taagaagaccaattttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_110128415_110129473
seq2: B6Ng01-340A20.b_47_1108

seq1  GAATTCATCCATTGGAGGCTGCAAACCAGATTTGGCTGAAATGTGCATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCATTGGAGGCTGCAAACCAGATTTGGCTGAAATGTGCATAT  50

seq1  TTAGCCTATGTTAACTCATAAATTGGATAAATACGTTATGCTAAACTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCTATGTTAACTCATAAATTGGATAAATACGTTATGCTAAACTGCA  100

seq1  CTGAGTAAATATTGAGTATGCAAAACACTCTTGTAGGTGTCTCAAACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTAAATATTGAGTATGCAAAACACTCTTGTAGGTGTCTCAAACACA  150

seq1  GAGAATATAGAATCTAGATTCTCCTCTGTGAAAGTGATGAGTACAGCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATATAGAATCTAGATTCTCCTCTGTGAAAGTGATGAGTACAGCTCC  200

seq1  TGCCCTGTGGGAAGGTTGGAATAGGGATGGGAGACTATGGAACAGGGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTGTGGGAAGGTTGGAATAGGGATGGGAGACTATGGAACAGGGAAA  250

seq1  CGCCAGGCAAGGGAATGGGGAAGTGGCTTTGGTAAAGAGCCTGGGACATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCAGGCAAGGGAATGGGGAAGTGGCTTTGGTAAAGAGCCTGGGACATC  300

seq1  AGTGGCTGGCATTCAATAGACCAGCAACGCAAACAGCACTGTGTGCTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTGGCATTCAATAGACCAGCAACGCAAACAGCACTGTGTGCTTCT  350

seq1  GGGGAAATTGAACGAAGCTTCTCAAAAAATAAAATCTGATTTGCTCTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAATTGAACGAAGCTTCTCAAAAAATAAAATCTGATTTGCTCTGTT  400

seq1  TCTTTCTTTTTTCATTTTTTTTCAGTATGTGATGTTTCTTTATTTCCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTTTTCATTTTTTTTCAGTATGTGATGTTTCTTTATTTCCAAG  450

seq1  TTTATTATTATTATTATTAGGTATTTTCCTCGTTTACATTTTCAATGCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTATTATTATTATTAGGTATTTTCCTCGTTTACATTTTCAATGCTA  500

seq1  TCCCAAAGGTCCCCCATACCCACCCCCCCTTTTTTCATTTTTGTTACGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAAGGTCCCCCATACCCACCCCCCCTTTTTTCATTTTTGTTACGAA  550

seq1  GTGTTTAATACACCGTGAAGCGTGTGTGTGTAAGATCAAGAAGAAAACGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTAATACACCGTGAAGCGTGTGTGTGTAAGATCAAGAAGAAAACGA  600

seq1  AAATCTCTTTTCTTCCAGTGAGATGCAGAATCTTACAAACCCCTCTGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTCTTTTCTTCCAGTGAGATGCAGAATCTTACAAACCCCTCTGAAC  650

seq1  ACCCTGTGGCTCATAGCTCCTTCCTGCCTACCCCAGTACTTCAAATTAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTGGCTCATAGCTCCTTCCTGCCTACCCCAGTACTTCAAATTAAT  700

seq1  ATTATTTCACCCAGGTGCAAAATATAGGAATTTCTGGATTGGCCAAGATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTCACCCAGGTGCAAAATATAGGAATTTCTGGATTGGCCAAGATC  750

seq1  TGCAACTTTTATTCTTACCTTTGGTTGGATCCATGAGAAATGAAATGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACTTTTATTCTTACCTTTGGTTGGATCCATGAGAAATGAAATGAAG  800

seq1  AAATATGTTGTGCTTGCCTGGTATGCTATGATTACATAGTGTGTGTGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGTTGTGCTTGCCTGGTATGCTATGATTACATAGTGTGTGTGTGT  850

seq1  GTGTGTGTGTGTGTGTACACATGTGCACACATACACACACACACACACAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTACACATGTGCACACATACACACACACACACACAC  900

seq1  ACACACACACACACACACACACTCATAAGGGATGGGGGTCAGAAGCAAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACTCATAAGGGATGGGGGTCAGAAGCAAAG  950

seq1  GGAGTT-CCAAAGAATTCAAGTCAAAATAACCTAAATAAAGGAAGAAGTT  999
      |||||| ||||||||| ||||||||| ||| || |||| ||| |||||||
seq2  GGAGTTCCCAAAGAATCCAAGTCAAATTAA-CTTAATAGAGG-AGAAGTT  998

seq1  CAATTTA-CTCATA-TTTATTTATTTGTTTGTTTTAAGATTACAAG-CAT  1046
      | ||||| |||||| |||||||||| ||||  ||||  |||||||| |||
seq2  CCATTTACCTCATATTTTATTTATTCGTTTTGTTTAGAATTACAAGCCAT  1048

seq1  GTCT-GCGTCTGTA  1059
      |||| || ||||||
seq2  GTCTGGCTTCTGTA  1062

seq1: chr8_110241459_110242670
seq2: B6Ng01-340A20.g_66_1282 (reverse)

seq1  AAAAATTG---TTTTTAAGTTAAAATTGGA-TTTATGCGTTT-CTGTGGG  45
      ||||||||   || ||||||   ||||||| ||||||||||| |||| ||
seq2  AAAAATTGGTCTTCTTAAGT--CAATTGGACTTTATGCGTTTCCTGT-GG  47

seq1  AGTGTATGCTGTGTGC-ATGTGTGG--AACTGATGGGGACCAGGAAAGGG  92
      ||   ||||||||||| ||||||||  | ||||||||  ||||  |||| 
seq2  AGGTAATGCTGTGTGCAATGTGTGGGAACCTGATGGGACCCAG--AAGGT  95

seq1  TGCTGGATTCCCTGAAGCTACAGTCACAGACAGTCATGA-GCACCCCCCA  141
      ||||||||||| ||||||||||||||||||||||||||| ||||||||| 
seq2  TGCTGGATTCCTTGAAGCTACAGTCACAGACAGTCATGAGGCACCCCCCC  145

seq1  ACGTGGAGTGCTAGGATCTGAA-TTCAGGACCTCTGGAAG-AGCCA-CAA  188
      ||||||||||||| |||||||| ||||||| ||||||||| ||||| |||
seq2  ACGTGGAGTGCTA-GATCTGAATTTCAGGAACTCTGGAAGAAGCCACCAA  194

seq1  GCTCCCCTAACC-ACTGAGCCATCTCAACAGCCTTCTCTTAAACTTTTTG  237
      |||||||||||| |||||||||||||||||| | |||||||||| |||||
seq2  GCTCCCCTAACCAACTGAGCCATCTCAACAG-CGTCTCTTAAAC-TTTTG  242

seq1  ATTTATGGTTTCACTGAAAACAGAGACATTTTTTTTCCAGGTCTTGTATA  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGGTTTCACTGAAAACAGAGACATTTTTTTTCCAGGTCTTGTATA  292

seq1  GTACCGTGACATCCTGTCTCTGGGGGGTGGGGGCATGATCCTCCCAAGTC  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCGTGACATCCTGTCTCTGGGGGGTGGGGGCATGATCCTCCCAAGTC  342

seq1  TACATATTATTACCCATCCCTGTGGCACGCGAATATTTCTCTATCCCCAC  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATTATTACCCATCCCTGTGGCACGCGAATATTTCTCTATCCCCAC  392

seq1  TCGTAGCCCTTTCTTGTCCGATATTAGCATATCTTAATTACATTTTCACT  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTAGCCCTTTCTTGTCCGATATTAGCATATCTTAATTACATTTTCACT  442

seq1  GCTGAAGACTTAGACAGTCACTATCGAGACCAGAGAAATTGTCAGTGGGT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAGACTTAGACAGTCACTATCGAGACCAGAGAAATTGTCAGTGGGT  492

seq1  TAAACAAATAGAAGATTGGCTTTTGCTGTTTCGAGCATTGGATTCTTGTC  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAATAGAAGATTGGCTTTTGCTGTTTCGAGCATTGGATTCTTGTC  542

seq1  ATGTTCTCTGGCGAACATTACAGTCTGTTAAATCAGCACGTTCCTTGGGG  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTCTGGCGAACATTACAGTCTGTTAAATCAGCACGTTCCTTGGGG  592

seq1  CCATTAGGACTCTCTGAGCGTTTCTGTGTTTCCGCTTTGATCTTCGTATT  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAGGACTCTCTGAGCGTTTCTGTGTTTCCGCTTTGATCTTCGTATT  642

seq1  TTATATTGCTGGTCAGGTGTGTGCGGCTCGCTATCATTAAAAAAGAGTTA  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTGCTGGTCAGGTGTGTGCGGCTCGCTATCATTAAAAAAGAGTTA  692

seq1  AATTGCTCAGTCCCAGGCTTCGGATTTTTATTATAACTCTTTAATTTTGT  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCTCAGTCCCAGGCTTCGGATTTTTATTATAACTCTTTAATTTTGT  742

seq1  GCCAGTGATAGAAATGTCAAATGATCCAGAAGCTGGCCAGTGCTGGGTAT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTGATAGAAATGTCAAATGATCCAGAAGCTGGCCAGTGCTGGGTAT  792

seq1  TTGTTTAAGTCCATTGTATTATGATTTTAGTCTCCAGAAAGGACAAAAGC  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTAAGTCCATTGTATTATGATTTTAGTCTCCAGAAAGGACAAAAGC  842

seq1  AGATATAGCTAGAGAGGTGTAAAATAGCACCACACATGGGCTGACTCTCC  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATAGCTAGAGAGGTGTAAAATAGCACCACACATGGGCTGACTCTCC  892

seq1  CTCCTTCCTACCCTGAGTTCAGCAGTAGATGGTCATGGTGGAGCTGTCTT  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCCTACCCTGAGTTCAGCAGTAGATGGTCATGGTGGAGCTGTCTT  942

seq1  CTTGTTCAAGTGGTGGGATGAGGATTTGAACTCAAGCTTGAAATGGGTGC  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTCAAGTGGTGGGATGAGGATTTGAACTCAAGCTTGAAATGGGTGC  992

seq1  CACACCCTAGAATTTAAGACCTGAAATACTGGATGACCTCTTTTAAAAAG  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCCTAGAATTTAAGACCTGAAATACTGGATGACCTCTTTTAAAAAG  1042

seq1  TCATTTTCTTATATATGTGTGGATGTTTTGCTTGTGTGTGTGTGTCTGTG  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTCTTATATATGTGTGGATGTTTTGCTTGTGTGTGTGTGTCTGTG  1092

seq1  CATCACATGTATGTATGGTGCCCATGGAGGCCAGAGATGGGCATCAGATA  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACATGTATGTATGGTGCCCATGGAGGCCAGAGATGGGCATCAGATA  1142

seq1  CCCGCCTGGTACAGGACCTGGTACAGGACTTATGGATGATCGTGAACAAC  1187
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCCTGGTACAGGACCTGGTACAGGACTTATGGATGATCGTGAACAAC  1192

seq1  CACGTGGACTCTGGGAACTGAATTC  1212
      |||||||||||||||||||||||||
seq2  CACGTGGACTCTGGGAACTGAATTC  1217