BAC Information

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BAC

Clone NameB6Ng01-340I05
Chromosome8 (Build37)
Map Location 40,455,307 - 40,579,804
singlet/doubletdoublet
Overlap geneLOC434304
Upstream geneTusc3, LOC100038974, LOC632066, EG621335
Downstream geneMsr1, EG621431, LOC100039072, LOC666959, EG632166, Fgf20, 2900075B16Rik, Zdhhc2, Cnot7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340I05.bB6Ng01-340I05.g
ACCGA124196GA124197
length9561,011
definitionB6Ng01-340I05.b B6Ng01-340I05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,455,307 - 40,456,259)(40,578,794 - 40,579,804)
sequence
gaattcctatgtgttaccctttgtttcaagaaagccacaatttagtcaat
aataataaaggtacataaatctgttcatcaagaaggattgctggactttt
cgtcataccgagtttacagaactcgttgcttcaagtgatctctcaccttg
taaaaatttgtactgtctttaataagggaaggaattaatgcctatccacc
ccaagtgtgagtactgtggactagacactgaaagaaataacctttaaaaa
aaatcaaaagattcataaaggttcaaggacttaaaataacctttaaaatc
caaagattaaaaatagatcaaggacttactgtcaaacataacatttaaaa
tgcaaattagcagcattgtctgcataaatcatgttacgaaagttgatttc
ataagttgatgcactgtctgaaggttttttttttttttggcccctctggt
gtcatacaccatgctggagcactaagtttctgaatgcttcccctgtgacc
agaggaggtaatgctcaactcaactactgaattcagttccaggatgtaat
ttacacactgggataatctggatgaacatagatcccctcccaatctataa
aactttgaatgattcacaaaggacaaattgacaagctgcacagattaaca
atcaacaaactagtgaagagtcttaaagttatattcttataggaaacgac
attgcaggttttttttttaattattgggtatttatttcatttacatttcc
catgctatcccaaaagtcccccacaccctcccacacccactcccccaccc
acccactcccacctcttggccctggcgttcccctgtactgaggcatataa
agtctgcacaccaatgggcctctttccactgatagccaaccaggccatct
tctgatacatatgcagctagagacaggagttcaggggtagggggggggtg
gggagt

gaattccacacccctaagccccttaccccataaaaccccctagctttcaa
gcctcgtggccgacatccattatctcctgtgtgggatgcatgtcggtacg
gagctctgtcattaaactgcctcatgtgattagagtaatggattctcatg
tttctttgggtgctctcttactcccaagactataatgggggggccaccaa
aagggggtcttacattttggggggctcgtcctggatttgggagctcccag
aaacccgagaataccccttggaggtacgtttgtttgtgtgagtcttgtct
gttgtctgttgtctaagtgtctaagtgtggcatcgctgaatttgtttctt
ggtttttcagttctggtattctgtattctggcagctgcccctgtggcccg
tgagtatgcttagatatactggtgtgtttttttctctgttgctgtcttgt
tttatttgtggttttcgtcttgggatacagacactgtacatcagaggtaa
agtggaatccctccctgcctgtatgtctgtatgtctgtgtgtctgactgt
cttgttcacttgtgtgtcctccattagatgaccttctgattctattttgc
ttttggtttgtctggtttcaggtctagttttgatcccaaggggttgactg
attatcttggtttggttttaggccaatctcaggttctggggtccttccca
tggagagaggtccatttgggttggttgcagtgacagtgagatgtgccaaa
ttgttgcaggtcacaactctggaggatgctccggtgtcaagctgggaagt
tggatctgaaacagtccttctcaacccagcagcagctagggttctgtata
tgcctggaacagatagtgtcaggcttctctggaaatctcgtgtaagatgc
cctgtattggtcttgcttgtgtttgtcattcctgtgtactgtgattctat
ggtggttgcctgaaaacggtttctggtgtgtgttttgtgtgtctctttgt
gttcagacctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_40455307_40456259
seq2: B6Ng01-340I05.b_45_1000

seq1  GAATTCCTATGTGTTACCCTTTGTTTCAAGAAAGCCACAATTTAGTCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATGTGTTACCCTTTGTTTCAAGAAAGCCACAATTTAGTCAAT  50

seq1  AATAATAAAGGTACATAAATCTGTTCATCAAGAAGGATTGCTGGACTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAAAGGTACATAAATCTGTTCATCAAGAAGGATTGCTGGACTTTT  100

seq1  CGTCATACCGAGTTTACAGAACTCGTTGCTTCAAGTGATCTCTCACCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCATACCGAGTTTACAGAACTCGTTGCTTCAAGTGATCTCTCACCTTG  150

seq1  TAAAAATTTGTACTGTCTTTAATAAGGGAAGGAATTAATGCCTATCCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATTTGTACTGTCTTTAATAAGGGAAGGAATTAATGCCTATCCACC  200

seq1  CCAAGTGTGAGTACTGTGGACTAGACACTGAAAGAAATAACCTTTAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTGTGAGTACTGTGGACTAGACACTGAAAGAAATAACCTTTAAAAA  250

seq1  AAATCAAAAGATTCATAAAGGTTCAAGGACTTAAAATAACCTTTAAAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAAAGATTCATAAAGGTTCAAGGACTTAAAATAACCTTTAAAATC  300

seq1  CAAAGATTAAAAATAGATCAAGGACTTACTGTCAAACATAACATTTAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATTAAAAATAGATCAAGGACTTACTGTCAAACATAACATTTAAAA  350

seq1  TGCAAATTAGCAGCATTGTCTGCATAAATCATGTTACGAAAGTTGATTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAATTAGCAGCATTGTCTGCATAAATCATGTTACGAAAGTTGATTTC  400

seq1  ATAAGTTGATGCACTGTCTGAAGGTTTTTTTTTTTTTTGGCCCCTCTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTTGATGCACTGTCTGAAGGTTTTTTTTTTTTTTGGCCCCTCTGGT  450

seq1  GTCATACACCATGCTGGAGCACTAAGTTTCTGAATGCTTCCCCTGTGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATACACCATGCTGGAGCACTAAGTTTCTGAATGCTTCCCCTGTGACC  500

seq1  AGAGGAGGTAATGCTCAACTCAACTACTGAATTCAGTTCCAGGATGTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGGTAATGCTCAACTCAACTACTGAATTCAGTTCCAGGATGTAAT  550

seq1  TTACACACTGGGATAATCTGGATGAACATAGATCCCCTCCCAATCTATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACACTGGGATAATCTGGATGAACATAGATCCCCTCCCAATCTATAA  600

seq1  AACTTTGAATGATTCACAAAGGACAAATTGACAAGCTGCACAGATTAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGAATGATTCACAAAGGACAAATTGACAAGCTGCACAGATTAACA  650

seq1  ATCAACAAACTAGTGAAGAGTCTTAAAGTTATATTCTTATAGGAAACGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACAAACTAGTGAAGAGTCTTAAAGTTATATTCTTATAGGAAACGAC  700

seq1  ATTGCAGGTTTTTTTTTTAATTATTGGGTATTTATTTCATTTACATTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAGGTTTTTTTTTTAATTATTGGGTATTTATTTCATTTACATTTCC  750

seq1  AATGCTATCCCAAAAGTCCCCCACACCCTCCCACACCCACTCCCCCACCC  800
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTATCCCAAAAGTCCCCCACACCCTCCCACACCCACTCCCCCACCC  800

seq1  ACCCACTCCCACCTCTTGGCCCTGGCGTTCCCCTGTACTGAGGCATATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACTCCCACCTCTTGGCCCTGGCGTTCCCCTGTACTGAGGCATATAA  850

seq1  AGTCTGCACACCAATGGGCCTCTTTCCACTGATAGCCAACCAGGCCATCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGCACACCAATGGGCCTCTTTCCACTGATAGCCAACCAGGCCATCT  900

seq1  TCTGATACATATGCAGCTAGAGACAGGAGTTCAGGGGTAGGGGGGG---T  947
      ||||||||||||||||||||||||||||||||||||||||||||||    
seq2  TCTGATACATATGCAGCTAGAGACAGGAGTTCAGGGGTAGGGGGGGGGTG  950

seq1  GGGAGT  953
      ||||||
seq2  GGGAGT  956


seq1: chr8_40578794_40579804
seq2: B6Ng01-340I05.g_68_1078 (reverse)

seq1  CAAGTCTGAACACAAAGAGACACACAAAACACACA-CAGAAACCGTTTTC  49
      || |||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CAGGTCTGAACACAAAGAGACACACAAAACACACACCAGAAACCGTTTTC  50

seq1  AGGCAACCACCATAGAATCACAGTACCACAGAAATGACAAACACAAGCAA  99
      ||||||||||||||||||||||||| ||||| ||||||||||||||||||
seq2  AGGCAACCACCATAGAATCACAGTA-CACAGGAATGACAAACACAAGCAA  99

seq1  GACCAATACAGGGCATCTTACACGAGATTTCCAGAGAAGCCTGACACTAT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAATACAGGGCATCTTACACGAGATTTCCAGAGAAGCCTGACACTAT  149

seq1  CTGTTCCAGGCATATACAGAACCCTAGCTGCTGCTGGGTTGAGAAGGACT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCCAGGCATATACAGAACCCTAGCTGCTGCTGGGTTGAGAAGGACT  199

seq1  GTTTCAGATCCAACTTCCCAGCTTGACACCGGAGCATCCTCCAGAGTTGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAGATCCAACTTCCCAGCTTGACACCGGAGCATCCTCCAGAGTTGT  249

seq1  GACCTGCAACAATTTGGCACATCTCACTGTCACTGCAACCAACCCAAATG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGCAACAATTTGGCACATCTCACTGTCACTGCAACCAACCCAAATG  299

seq1  GACCTCTCTCCATGGGAAGGACCCCAGAACCTGAGATTGGCCTAAAACCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCTCTCCATGGGAAGGACCCCAGAACCTGAGATTGGCCTAAAACCA  349

seq1  AACCAAGATAATCAGTCAACCCCTTGGGATCAAAACTAGACCTGAAACCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAGATAATCAGTCAACCCCTTGGGATCAAAACTAGACCTGAAACCA  399

seq1  GACAAACCAAAAGCAAAATAGAATCAGAAGGTCATCTAATGGAGGACACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAACCAAAAGCAAAATAGAATCAGAAGGTCATCTAATGGAGGACACA  449

seq1  CAAGTGAACAAGACAGTCAGACACACAGACATACAGACATACAGGCAGGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGAACAAGACAGTCAGACACACAGACATACAGACATACAGGCAGGG  499

seq1  AGGGATTCCACTTTACCTCTGATGTACAGTGTCTGTATCCCAAGACGAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATTCCACTTTACCTCTGATGTACAGTGTCTGTATCCCAAGACGAAA  549

seq1  ACCACAAATAAAACAAGACAGCAACAGAGAAAAAAACACACCAGTATATC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAAATAAAACAAGACAGCAACAGAGAAAAAAACACACCAGTATATC  599

seq1  TAAGCATACTCACGGGCCACAGGGGCAGCTGCCAGAATACAGAATACCAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCATACTCACGGGCCACAGGGGCAGCTGCCAGAATACAGAATACCAG  649

seq1  AACTGAAAAACCAAGAAACAAATTCAGCGATGCCACACTTAGACACTTAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAAAAACCAAGAAACAAATTCAGCGATGCCACACTTAGACACTTAG  699

seq1  ACAACAGACAACAGACAAGACTCACACAAACAAACGTACCTCCAAGGGGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAGACAACAGACAAGACTCACACAAACAAACGTACCTCCAAGGGGT  749

seq1  ATTCTCGGGTTTCTGGGAGCTCCCAAATCCAGGACGAGCCCCCCAAAATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCGGGTTTCTGGGAGCTCCCAAATCCAGGACGAGCCCCCCAAAATG  799

seq1  TAAGACCCCCTTTTGGTGGCCCCCCCATTATAGTCTTGGGAGTAAGAGAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACCCCCTTTTGGTGGCCCCCCCATTATAGTCTTGGGAGTAAGAGAG  849

seq1  CACCCAAAGAAACATGAGAATCCATTACTCTAATCACATGAGGCAGTTTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAAAGAAACATGAGAATCCATTACTCTAATCACATGAGGCAGTTTA  899

seq1  ATGACAGAGCTCCGTACCGACATGCATCCCACACAGGAGATAATGGATGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGAGCTCCGTACCGACATGCATCCCACACAGGAGATAATGGATGT  949

seq1  CGGCCACGAGGCTTGAAAGCTAGGGGGTTTTATGGGGTAAGGGGCTTAGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCACGAGGCTTGAAAGCTAGGGGGTTTTATGGGGTAAGGGGCTTAGG  999

seq1  GGTGTGGAATTC  1011
      ||||||||||||
seq2  GGTGTGGAATTC  1011


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