BAC Information

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BAC

Clone NameB6Ng01-340I14
Chromosome8 (Build37)
Map Location 26,800,480 - 26,922,237
singlet/doubletdoublet
Overlap geneWhsc1l1, Ppapdc1, Bag4, Lsm1, Star
Upstream geneAdam3, Adam5, Adam32, Adam9, Tm2d2, Htra4, Plekha2, LOC100042390, Tacc1, LOC670822, LOC100040998, Fgfr1, D030041N04Rik, LOC100042416
Downstream geneAsh2l, Kcnu1, Hgsnat, 4930444A02Rik, Fnta, Hook3, 1700047A11Rik, Rnf170, Thap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340I14.bB6Ng01-340I14.g
ACCGA124210GA124211
length1,227146
definitionB6Ng01-340I14.b B6Ng01-340I14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,920,986 - 26,922,237)(26,800,480 - 26,800,625)
sequence
gaattcctagactggttagttacttagagtcccttgatttttaactttca
tcaggaggtactttaccaagaatactaaacagttggcatgggtactagct
catcagaacctgctggttgtggctggaggcttctcgctgggccaccactg
ttagaacccaaagaggcctgctcctagctttggaaaattattaggattct
tagaaaagttcctgggagggtagaataaaccacctagctgcggaagtggg
gctactctggccattgcttttttttttttaaagctgagtgtggggctaag
aattggttgcttggaagtggggatcaagattatgacactgcagtttggag
actgccgccaagttttacctgatgacaccactctgctccggcatctcccc
aaaatgtgtggccatgcctgccagcacacaggtggaacctctgcgcttgg
tacagcgcacgctcacgaagtctcgaggccccaccaggttgcctgctgcc
gccgcagccagctcatgagtgatgaccgtgtcttttccaatcctctgcag
gacctagcacaagggagttggagcctggactcagccactgataggctaag
cacctgctgttcaggactgcattcgcttggttccctgccgcccacacttg
ggctttcctcaccttgatctccttgacatttgggttccactctcccatgg
cctccatgcggtccacaagttcttcatagagtctgtccatgggctggtct
accaccacctccaagcgaaacaccttgcccacatctggcaccatcttact
tagcacttcgtccccgttctcctgttagggacaaaagagagccatggggt
tacggttagagaacattattcctagcctaggtttcagacaatactcagaa
cagagacagtaggcctacgatgagcaataggtacctggatctctacctgg
tgaagacccagtgggtagacactgcggccaaaagccttgtatgtccactc
aaagctggagaggtacacgctattgtttagtgatgatgtgtagtatgggt
tagtccaactgaaatgacctgagacgactgtctacaagcagcttaactag
ataagagagcctggcctttggaatagtgactcacttggagaccctggggc
tgaaaggttcaggtatctgcagacgcctagccagaatacctgcctagcct
ggatccggaactagtggatatcagatg
cattctgtcactttgttcagacctatcatctgtccatctgtccttccatc
cttccttctttccttcttccttctttccttcttcccttctttccatcctt
ccccttcccccctcctcctctcccctccccttccccctcctcctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_26920986_26922237
seq2: B6Ng01-340I14.b_44_1269 (reverse)

seq1  ATCTGATCCACTGATCCACTGATCCGGGATCCAGGCTTAGCAGTGTA-TC  49
      |||||||      |||||||  | | |||||||||||  |||| ||| ||
seq2  ATCTGAT------ATCCACTAGTTCCGGATCCAGGCTAGGCAG-GTATTC  43

seq1  TGTGCTGAGCGTCTTGGGCAGATCACTGAAACCTTCAGGCCCCAGGTTCT  99
      || |||  ||||||   ||||||  ||||| | |||| |||||||| |||
seq2  TG-GCTAGGCGTCT---GCAGATACCTGAACCTTTCA-GCCCCAGGGTCT  88

seq1  TCCAAAGTGAGTCAACTAATCAAAAAGCCCAGCCTTCTCTTTATCTAGTT  149
        | ||||||||| |||| || ||| |||  ||  |||| ||||||||||
seq2  --CCAAGTGAGTC-ACTATTCCAAAGGCCAGGC--TCTC-TTATCTAGTT  132

seq1  -AGCTGC-TGTAGACCAGTCCGTCCTTCAGGTCATTTCAGTTGGACCTAC  197
       |||||| |||||| |||| ||||  ||||||||||||||||||||  ||
seq2  AAGCTGCTTGTAGA-CAGT-CGTC--TCAGGTCATTTCAGTTGGACTAAC  178

seq1  CCATACTACCAACATTCATCACTAAAACAATAGGCGTGGTACCTCTTCCA  247
      |||||||||  ||| |||||||| |||||||| |||| ||||||| ||||
seq2  CCATACTAC--ACA-TCATCACT-AAACAATA-GCGT-GTACCTC-TCCA  221

seq1  GCTTTGAGTGGACATACAAGGCTTTTGGCCGCAGTGTCTACCCACTGGGT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGAGTGGACATACAAGGCTTTTGGCCGCAGTGTCTACCCACTGGGT  271

seq1  CTTCACCAGGTAGAGATCCAGGTACCTATTGCTCATCGTAGGCCTACTGT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACCAGGTAGAGATCCAGGTACCTATTGCTCATCGTAGGCCTACTGT  321

seq1  CTCTGTTCTGAGTATTGTCTGAAACCTAGGCTAGGAATAATGTTCTCTAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTCTGAGTATTGTCTGAAACCTAGGCTAGGAATAATGTTCTCTAA  371

seq1  CCGTAACCCCATGGCTCTCTTTTGTCCCTAACAGGAGAACGGGGACGAAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTAACCCCATGGCTCTCTTTTGTCCCTAACAGGAGAACGGGGACGAAG  421

seq1  TGCTAAGTAAGATGGTGCCAGATGTGGGCAAGGTGTTTCGCTTGGAGGTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAGTAAGATGGTGCCAGATGTGGGCAAGGTGTTTCGCTTGGAGGTG  471

seq1  GTGGTAGACCAGCCCATGGACAGACTCTATGAAGAACTTGTGGACCGCAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAGACCAGCCCATGGACAGACTCTATGAAGAACTTGTGGACCGCAT  521

seq1  GGAGGCCATGGGAGAGTGGAACCCAAATGTCAAGGAGATCAAGGTGAGGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCCATGGGAGAGTGGAACCCAAATGTCAAGGAGATCAAGGTGAGGA  571

seq1  AAGCCCAAGTGTGGGCGGCAGGGAACCAAGCGAATGCAGTCCTGAACAGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCAAGTGTGGGCGGCAGGGAACCAAGCGAATGCAGTCCTGAACAGC  621

seq1  AGGTGCTTAGCCTATCAGTGGCTGAGTCCAGGCTCCAACTCCCTTGTGCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCTTAGCCTATCAGTGGCTGAGTCCAGGCTCCAACTCCCTTGTGCT  671

seq1  AGGTCCTGCAGAGGATTGGAAAAGACACGGTCATCACTCATGAGCTGGCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCTGCAGAGGATTGGAAAAGACACGGTCATCACTCATGAGCTGGCT  721

seq1  GCGGCGGCAGCAGGCAACCTGGTGGGGCCTCGAGACTTCGTGAGCGTGCG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCGGCAGCAGGCAACCTGGTGGGGCCTCGAGACTTCGTGAGCGTGCG  771

seq1  CTGTACCAAGCGCAGAGGTTCCACCTGTGTGCTGGCAGGCATGGCCACAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACCAAGCGCAGAGGTTCCACCTGTGTGCTGGCAGGCATGGCCACAC  821

seq1  ATTTTGGGGAGATGCCGGAGCAGAGTGGTGTCATCAGGTAAAACTTGGCG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGGGAGATGCCGGAGCAGAGTGGTGTCATCAGGTAAAACTTGGCG  871

seq1  GCAGTCTCCAAACTGCAGTGTCATAATCTTGATCCCCACTTCCAAGCAAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCTCCAAACTGCAGTGTCATAATCTTGATCCCCACTTCCAAGCAAC  921

seq1  CAATTCTTAGCCCCACACTCAGCTTTAAAAAAAAAAAAGCAATGGCCAGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTTAGCCCCACACTCAGCTTTAAAAAAAAAAAAGCAATGGCCAGA  971

seq1  GTAGCCCCACTTCCGCAGCTAGGTGGTTTATTCTACCCTCCCAGGAACTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCCCACTTCCGCAGCTAGGTGGTTTATTCTACCCTCCCAGGAACTT  1021

seq1  TTCTAAGAATCCTAATAATTTTCCAAAGCTAGGAGCAGGCCTCTTTGGGT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAGAATCCTAATAATTTTCCAAAGCTAGGAGCAGGCCTCTTTGGGT  1071

seq1  TCTAACAGTGGTGGCCCAGCGAGAAGCCTCCAGCCACAACCAGCAGGTTC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACAGTGGTGGCCCAGCGAGAAGCCTCCAGCCACAACCAGCAGGTTC  1121

seq1  TGATGAGCTAGTACCCATGCCAACTGTTTAGTATTCTTGGTAAAGTACCT  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAGCTAGTACCCATGCCAACTGTTTAGTATTCTTGGTAAAGTACCT  1171

seq1  CCTGATGAAAGTTAAAAATCAAGGGACTCTAAGTAACTAACCAGTCTAGG  1247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATGAAAGTTAAAAATCAAGGGACTCTAAGTAACTAACCAGTCTAGG  1221

seq1  AATTC  1252
      |||||
seq2  AATTC  1226

seq1: chr8_26800480_26800625
seq2: B6Ng01-340I14.g_72_217

seq1  CATTCTGTCACTTTGTTCAGACCTATCATCTGTCCATCTGTCCTTCCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGTCACTTTGTTCAGACCTATCATCTGTCCATCTGTCCTTCCATC  50

seq1  CTTCCTTCTTTCCTTCTTCCTTCTTTCCTTCTTCCCTTCTTTCCATCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTCTTTCCTTCTTCCTTCTTTCCTTCTTCCCTTCTTTCCATCCTT  100

seq1  CCCCTTCCCCCCTCCTCCTCTCCCCTCCCCTTCCCCCTCCTCCTCT  146
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTCCCCCCTCCTCCTCTCCCCTCCCCTTCCCCCTCCTCCTCT  146