BAC Information

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BAC

Clone NameB6Ng01-341H20
Chromosome8 (Build37)
Map Location 50,725,344 - 50,894,229
singlet/doubletdoublet
Overlap genenone
Upstream geneOdz3, 2900073C17Rik, LOC100039866, 4930555F03Rik
Downstream geneLOC100039919, EG667495, LOC100039954, LOC100039966
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341H20.bB6Ng01-341H20.g
ACCGA124858GA124859
length1,1501,115
definitionB6Ng01-341H20.b B6Ng01-341H20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,893,074 - 50,894,229)(50,725,344 - 50,726,458)
sequence
gaattctccatgcaggccctttaactggttgacattataacagaattttc
caaccattccatcttctactttctgactcaaggatttaattcaaaggaaa
gagtgaattaagatggccagcggcaatgtgctctcttttatctatcctat
ccatattgtgctatttaaattgactattctcatgccaagaacttgcttag
caactgtggcctttaatattacgctgaaaactgataatgaatgactcgta
tgactgattttggggttttgttctcatcaaaaggagaagacgatgcattg
aatcatgacgtgaaaacacgtatgtaagtactcctctgagccccacattc
ttcaggataacagtgagaataagagtttatattaaatcattcagcacagt
ttgttacattcatactcctatctctacccacactacatttgttcattact
ttgttaataagaattaaaacttcaatatagaaccaatagtttgaattata
agtttattcatgtctggaatcagctgctactaagagcagtgtgtacttcc
acatgctttgttggtattaacttttttttcattctctcaatgaataaatg
atgattattatcatcctcattttacatcctagtaacttaagctgttggtg
atttgagtagcttaatgcctcacaaggcaggattgaagggctaaggtttt
gttctcagttcaggatggtccatgttctgatctctggcactttgcttcct
gtttctttttttttcctctcttttcagaaacatatatcaaattgaccttt
aagtaactgcagccatggacttcattgtagttctttttctgtcattcaga
agtttcctataatacatatatttttaaaatattaatttcccccaaacaaa
agagcaaatacatgttattataattatcataggtttgtttttataccacc
ccaagtttgcagccatgttcctgttaatgatttttgtaatataatcactc
agactaaagttctgacaaaaaaattataacttgttcttcattgacaaagg
aaatgaacatattctccaaatagagtaaatcatagattgccaggccttgg
ttatttgattcaattggattctacaaaggctcttttatggaaattgactg

gaattcacaaacctatgccagcaatttcagatatccaagcacctctcttt
tgtactctttctttttgaaaggcaataaatattcctgaatagattcctga
ggacaatctaaaaaaaaaaaaaaaaaaaaaaaaaagtgcttacaatgggg
gaagaatctccttggttatattcaagcctaactttcatttctttgagaaa
gcccagaaaggtgcgacttgcttataatctggcctcacctgagatgattt
cataatgaggctttgccactactaaaacaggctccctgacaaatacaaag
aaacgcagctggtgaggtgaagcgaggagacgcagagtttggagaaaagg
cattaggtagcatttttccccccacagatttttagtacaattcactgtga
agtaatcttgcatacttcataataaaactgctctgaatagcgacagggat
accaaataataaatatatccaatctttagaactctctgacagtagaaaga
ccttataacaacttggaaatggtttgacccagtgtcttgtgatgaacaca
atatgttttttttttcttttccttttttgctttcacacatagtagtctct
aaatggctcatacatttaaaatggttcgactatcaatattacataaatat
tggtaaagtattatatacatttttatcaaaaactttgggcttttatttta
acacccagattggttctattaacttattaaggagagaatgcattactctg
tattggagctaagttccctgtggatatatttattccttagtgtcctgagg
gacatgaacattgagcatgagcagattttgacaacagtgtgtgtcaacac
agtggtctttgtggatgtaaacaataattaaattaacttagaaaattgct
ttatgccttattgaagaaggacgtttgtagacttggcagcttttctttta
ataattaaggaggccattttaaaaggtgcaattcacctgacttggtttaa
gcacagttggaatttttatttatgaaaaccgtggtgtggtgtgaatgacc
caataaaagtgtgccttcctgaagcgattggaatactgcactctgctgat
agtttatggggagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_50893074_50894229
seq2: B6Ng01-341H20.b_44_1193 (reverse)

seq1  CAGTCAATTTCCATAAAGAAGCTTTTGTAGAATCAACATGGATCAAATAA  50
      |||||||||||||||||  ||| ||||||||||| |  || |||||||||
seq2  CAGTCAATTTCCATAAAAGAGCCTTTGTAGAATCCAATTGAATCAAATAA  50

seq1  CCAAAGCCTGGCAATTCTATGATGTACTCTTATTTGAAGAATATGTTCAA  100
      |||| ||||||||| |||||||| ||||| |||||| |||||||||||| 
seq2  CCAAGGCCTGGCAA-TCTATGATTTACTC-TATTTGGAGAATATGTTCAT  98

seq1  TTTCTTTGTCAATGAAG-ACAAGTTTATAATTTTTTTGTCAGAAACTTTA  149
      || |||||||||||||| ||||| |||||||||||||||||| |||||| 
seq2  TTCCTTTGTCAATGAAGAACAAG-TTATAATTTTTTTGTCAG-AACTTT-  145

seq1  AGTCTGAGTGATTATATTACAAAAATCATTAACAGGAACATGGCTGCAAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGAGTGATTATATTACAAAAATCATTAACAGGAACATGGCTGCAAA  195

seq1  CCTTGGGGTGGTATAAAAACAAACCTATGATAATTATAATAACATGTATT  249
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -CTTGGGGTGGTATAAAAACAAACCTATGATAATTATAATAACATGTATT  244

seq1  TGCTCTTTTTGTTTGGGGGAAATTAATATTTTAAAAATATATGTATTATA  299
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTC-TTTTGTTTGGGGGAAATTAATATTTTAAAAATATATGTATTATA  293

seq1  GGAAACTTCTGAATGACAGAAAAAGAACTACAATGAAGTCCATGGCTGCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACTTCTGAATGACAGAAAAAGAACTACAATGAAGTCCATGGCTGCA  343

seq1  GTTACTTAAAGGTCAATTTGATATATGTTTCTGAAAAGAGAGGAAAAAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTTAAAGGTCAATTTGATATATGTTTCTGAAAAGAGAGGAAAAAAA  393

seq1  AAGAAACAGGAAGCAAAGTGCCAGAGATCAGAACATGGACCATCCTGAAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACAGGAAGCAAAGTGCCAGAGATCAGAACATGGACCATCCTGAAC  443

seq1  TGAGAACAAAACCTTAGCCCTTCAATCCTGCCTTGTGAGGCATTAAGCTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACAAAACCTTAGCCCTTCAATCCTGCCTTGTGAGGCATTAAGCTA  493

seq1  CTCAAATCACCAACAGCTTAAGTTACTAGGATGTAAAATGAGGATGATAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAATCACCAACAGCTTAAGTTACTAGGATGTAAAATGAGGATGATAA  543

seq1  TAATCATCATTTATTCATTGAGAGAATGAAAAAAAAGTTAATACCAACAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCATCATTTATTCATTGAGAGAATGAAAAAAAAGTTAATACCAACAA  593

seq1  AGCATGTGGAAGTACACACTGCTCTTAGTAGCAGCTGATTCCAGACATGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGTGGAAGTACACACTGCTCTTAGTAGCAGCTGATTCCAGACATGA  643

seq1  ATAAACTTATAATTCAAACTATTGGTTCTATATTGAAGTTTTAATTCTTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTTATAATTCAAACTATTGGTTCTATATTGAAGTTTTAATTCTTA  693

seq1  TTAACAAAGTAATGAACAAATGTAGTGTGGGTAGAGATAGGAGTATGAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAAAGTAATGAACAAATGTAGTGTGGGTAGAGATAGGAGTATGAAT  743

seq1  GTAACAAACTGTGCTGAATGATTTAATATAAACTCTTATTCTCACTGTTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAAACTGTGCTGAATGATTTAATATAAACTCTTATTCTCACTGTTA  793

seq1  TCCTGAAGAATGTGGGGCTCAGAGGAGTACTTACATACGTGTTTTCACGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAAGAATGTGGGGCTCAGAGGAGTACTTACATACGTGTTTTCACGT  843

seq1  CATGATTCAATGCATCGTCTTCTCCTTTTGATGAGAACAAAACCCCAAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATTCAATGCATCGTCTTCTCCTTTTGATGAGAACAAAACCCCAAAA  893

seq1  TCAGTCATACGAGTCATTCATTATCAGTTTTCAGCGTAATATTAAAGGCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCATACGAGTCATTCATTATCAGTTTTCAGCGTAATATTAAAGGCC  943

seq1  ACAGTTGCTAAGCAAGTTCTTGGCATGAGAATAGTCAATTTAAATAGCAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTGCTAAGCAAGTTCTTGGCATGAGAATAGTCAATTTAAATAGCAC  993

seq1  AATATGGATAGGATAGATAAAAGAGAGCACATTGCCGCTGGCCATCTTAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGGATAGGATAGATAAAAGAGAGCACATTGCCGCTGGCCATCTTAA  1043

seq1  TTCACTCTTTCCTTTGAATTAAATCCTTGAGTCAGAAAGTAGAAGATGGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTCTTTCCTTTGAATTAAATCCTTGAGTCAGAAAGTAGAAGATGGA  1093

seq1  ATGGTTGGAAAATTCTGTTATAATGTCAACCAGTTAAAGGGCCTGCATGG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTGGAAAATTCTGTTATAATGTCAACCAGTTAAAGGGCCTGCATGG  1143

seq1  AGAATTC  1156
      |||||||
seq2  AGAATTC  1150

seq1: chr8_50725344_50726458
seq2: B6Ng01-341H20.g_69_1183

seq1  GAATTCACAAACCTATGCCAGCAATTTCAGATATCCAAGCACCTCTCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAAACCTATGCCAGCAATTTCAGATATCCAAGCACCTCTCTTT  50

seq1  TGTACTCTTTCTTTTTGAAAGGCAATAAATATTCCTGAATAGATTCCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTCTTTCTTTTTGAAAGGCAATAAATATTCCTGAATAGATTCCTGA  100

seq1  GGACAATCTAAAAAAAAAAAAAAAAAAAAAAAAAAGTGCTTACAATGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAATCTAAAAAAAAAAAAAAAAAAAAAAAAAAGTGCTTACAATGGGG  150

seq1  GAAGAATCTCCTTGGTTATATTCAAGCCTAACTTTCATTTCTTTGAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATCTCCTTGGTTATATTCAAGCCTAACTTTCATTTCTTTGAGAAA  200

seq1  GCCCAGAAAGGTGCGACTTGCTTATAATCTGGCCTCACCTGAGATGATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGAAAGGTGCGACTTGCTTATAATCTGGCCTCACCTGAGATGATTT  250

seq1  CATAATGAGGCTTTGCCACTACTAAAACAGGCTCCCTGACAAATACAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATGAGGCTTTGCCACTACTAAAACAGGCTCCCTGACAAATACAAAG  300

seq1  AAACGCAGCTGGTGAGGTGAAGCGAGGAGACGCAGAGTTTGGAGAAAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGCAGCTGGTGAGGTGAAGCGAGGAGACGCAGAGTTTGGAGAAAAGG  350

seq1  CATTAGGTAGCATTTTTCCCCCCACAGATTTTTAGTACAATTCACTGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGGTAGCATTTTTCCCCCCACAGATTTTTAGTACAATTCACTGTGA  400

seq1  AGTAATCTTGCATACTTCATAATAAAACTGCTCTGAATAGCGACAGGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATCTTGCATACTTCATAATAAAACTGCTCTGAATAGCGACAGGGAT  450

seq1  ACCAAATAATAAATATATCCAATCTTTAGAACTCTCTGACAGTAGAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAATAATAAATATATCCAATCTTTAGAACTCTCTGACAGTAGAAAGA  500

seq1  CCTTATAACAACTTGGAAATGGTTTGACCCAGTGTCTTGTGATGAACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATAACAACTTGGAAATGGTTTGACCCAGTGTCTTGTGATGAACACA  550

seq1  ATATGTTTTTTTTTTCTTTTCCTTTTTTGCTTTCACACATAGTAGTCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTTTTTTTTTCTTTTCCTTTTTTGCTTTCACACATAGTAGTCTCT  600

seq1  AAATGGCTCATACATTTAAAATGGTTCGACTATCAATATTACATAAATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGCTCATACATTTAAAATGGTTCGACTATCAATATTACATAAATAT  650

seq1  TGGTAAAGTATTATATACATTTTTATCAAAAACTTTGGGCTTTTATTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAAGTATTATATACATTTTTATCAAAAACTTTGGGCTTTTATTTTA  700

seq1  ACACCCAGATTGGTTCTATTAACTTATTAAGGAGAGAATGCATTACTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCAGATTGGTTCTATTAACTTATTAAGGAGAGAATGCATTACTCTG  750

seq1  TATTGGAGCTAAGTTCCCTGTGGATATATTTATTCCTTAGTGTCCTGAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGAGCTAAGTTCCCTGTGGATATATTTATTCCTTAGTGTCCTGAGG  800

seq1  GACATGAACATTGAGCATGAGCAGATTTTGACAACAGTGTGTGTCAACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGAACATTGAGCATGAGCAGATTTTGACAACAGTGTGTGTCAACAC  850

seq1  AGTGGTCTTTGTGGATGTAAACAAATAATTAAATTAACTTAGAAAATTGC  900
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGTGGTCTTTGTGGATGTAAAC-AATAATTAAATTAACTTAGAAAATTGC  899

seq1  TTTATGCCTTATTGAAGAAGGACGTTTGTAGACTGGGCAGCTTT--CTTT  948
      |||||||||||||||||||||||||||||||||| |||||||||   |||
seq2  TTTATGCCTTATTGAAGAAGGACGTTTGTAGACTTGGCAGCTTTTCTTTT  949

seq1  AATAA-TAAGGAGGCATTTTTAAAAGGTGCAATTCA-CTGACTTGTTTTA  996
      ||||| |||||||||  ||||||||||||||||||| |||||||| ||| 
seq2  AATAATTAAGGAGGCCATTTTAAAAGGTGCAATTCACCTGACTTGGTTT-  998

seq1  AAGCACAGTTGAAATTTTTATTTATGAAAA-CGTG--GTGGTGTGAAATG  1043
      ||||||||||| |||||||||||||||||| ||||  |||||||| ||||
seq2  AAGCACAGTTGGAATTTTTATTTATGAAAACCGTGGTGTGGTGTG-AATG  1047

seq1  ACACAATAAAAGTGTTGGCCTTCCTGAGGCCGATGG-ATACTGGCACTCT  1092
      || ||||||||||||  |||||||||| ||   ||| ||||| |||||||
seq2  ACCCAATAAAAGTGT--GCCTTCCTGAAGCGATTGGAATACT-GCACTCT  1094

seq1  GCTCGATAGTTTTATGGGGAGAA  1115
      ||| ||||| |||||||||||||
seq2  GCT-GATAG-TTTATGGGGAGAA  1115