BAC Information

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BAC

Clone NameB6Ng01-342B04
Chromosome8 (Build37)
Map Location 86,391,096 - 86,577,761
singlet/doubletdoublet
Overlap geneEG384857, Lphn1, Asf1b, Prkaca, Samd1, 1700067K01Rik, 2210011C24Rik, 4432412L15Rik, Il27ra, Rln3
Upstream geneRnf150, LOC100039688, Tbc1d9, Ucp1, Elmod2, 4933434I20Rik, Clgn, Scoc, LOC546077, LOC675854, Olfr370, Ndufb7, Gpsn2, Dnajb1, Gipc1, Ptger1, Pkn1, Ddx39, Cd97
Downstream geneC330011M18Rik, Rfx1, BC057552, LOC100039920, Podnl1, Cc2d1a, 4930432K21Rik, Nanos3, Zswim4, D8Ertd738e, 2410018C20Rik, Ccdc130, Cacna1a, Ier2, LOC100039975, Btbd14b, Trmt1, LOC100039997, Lyl1, Nfix, Dand5, Gadd45gip1, Rad23a, Calr, LOC546080, Farsa, Syce2, Gcdh, Klf1, Dnase2a, Mast1, Rtbdn, Rnaseh2a, LOC666841, Prdx2, Junb, Hook2, Best2, Asna1, 2310036O22Rik, Tnpo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342B04.bB6Ng01-342B04.g
ACCGA125268GA125269
length7181,172
definitionB6Ng01-342B04.b B6Ng01-342B04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,391,096 - 86,391,698)(86,576,587 - 86,577,761)
sequence
gaattcatgcctgatactgtaatctattataaagtcaaagtctggggaag
ttgcaggccacgggagggaccctatgctttgctaactggttctgctgtca
aactgcctactaaatatatatatatgattgtgtctataaattagtggttc
tctcaaccttggtcacagacttttttttgtatgcagtcaagccatgcatg
gctaaggtactgagatatatatagcccggccctaaacgagacatttatat
caataccaccccctccaccaaggctcagggaacatcaaagatgagaggct
aggaagaatataagagctggaggttgagccgggcgtggtggcacacgcct
ttaatcccagcactcgggaggcagaggcaggtggatttctgagttcgagg
ctagcctggtctacaaagtgagttccaggacagcagggctatacagagaa
accctgtctcgaaaaacaaaaaacaaaaaacaaaaaacaaacaaacaaaa
aaaagagctagaggttgaattggagtcctgggaattgctatcttctgcac
atggctaagtcattgtattcaggaaagctgcagctgcagctacctgcaca
cagcctgtaagtcccttgcttacacagaaagaagttttactgagtactct
ttcatcaaacctatcccatgggggttttgttttgttgttagtttgtttgg
gttcttgttttcaggtca
gaattcagttctcagcacccacatcatgtgagtcacaaccacccagaact
ccagcttcagggaatctatcactctttcagtttccaagggcatctgcact
cacttgtacaaactcatgcagacacacacgtacacataattgaaaataaa
atctttttaaaaaaaaaagtctcggggctggagagatggatcagcagtta
agaggtcctgatgcatgcctttaatcccagtacctaggagagggagtcag
gcaaaactctgtgagttcaaggaccagccagggttacctagtgagacttt
atctcaaaataaatacttatggagttgaggaaatggctcagtgattaaga
gcacttgctgctttttcagaggacttgggtttagctctcagacccacatg
gtaactaagggttatctgtaatttccagggaacctgatgccatcttccgg
ccttttcaggtactgcacacacatgatgcacatacatacaggctagggcc
agaaaaatggcctccgctgtaaaaagataactcacaaccaaaaatacata
caggcagatacacccatgcatagaaaaataaatcatgaaaaagatagcgt
gcacacggcttgcacgtataatcccagaacaatggagggtaggcaggagg
atcgtgagttctagggcactttggagtacattgcaatagcagaacaaaaa
atgataggaagtttagagaaacaacaaactgagaaggaaatatccatcat
tcatttcctcagcaactgataaaccaccttaatatgaataagagatcaat
gaaggggtggtggctacagaggaggaaccggtgaccgtgctgagccctgg
agctgtgctgcctagctgtggcacagggaggacatacaagctttctcctc
atggcctatgggaggtcaggctggccaacagccaacacttgctatgctct
ctgctgataggctataagcaaacagttttaattcattgtgtgagtgtgtg
tgatttagccctgaaaggggagatctgacagcatcccaactatgaatgcc
aggaaccctggggaaactccacgcttagaacatgctgtgtttgtgtgaag
tgtgtgctctagggtggggtaagcatggtgcttccagtgaaattttatga
gagaaatgcgtgactcatctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_86391096_86391698
seq2: B6Ng01-342B04.b_162_766

seq1  ATATATATATATGATTGTGTCTATAAATTAGTGGTTCTCTCAACCTTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATGATTGTGTCTATAAATTAGTGGTTCTCTCAACCTTGGT  50

seq1  CACAGACTTTTTTTTGTATGCAGTCAAGCCATGCATGGCTAAGGTACTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACTTTTTTTTGTATGCAGTCAAGCCATGCATGGCTAAGGTACTGA  100

seq1  GATATATATAGCCCGGCCCTAAACGAGACATTTATATCAATACCACCCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATATATAGCCCGGCCCTAAACGAGACATTTATATCAATACCACCCCC  150

seq1  TCCACCAAGGCTCAGGGAACATCAAAGATGAGAGGCTAGGAAGAATATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCAAGGCTCAGGGAACATCAAAGATGAGAGGCTAGGAAGAATATAA  200

seq1  GAGCTGGAGGTTGAGCCGGGCGTGGTGGCACACGCCTTTAATCCCAGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGGAGGTTGAGCCGGGCGTGGTGGCACACGCCTTTAATCCCAGCAC  250

seq1  TCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCTAGCCTGGTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCTAGCCTGGTCTA  300

seq1  CAAAGTGAGTTCCAGGACAGCAGGGCTATACAGAGAAACCCTGTCTCGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGAGTTCCAGGACAGCAGGGCTATACAGAGAAACCCTGTCTCGAA  350

seq1  AAACAAAAAACAAAAAACAAAAAACAAACAAACAAAAAAAAGAGCTAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAAACAAAAAACAAAAAACAAACAAACAAAAAAAAGAGCTAGAG  400

seq1  GTTGAATTGGAGTCCTGGGAATTGCTATCTTCTGCACATGGCTAAGTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAATTGGAGTCCTGGGAATTGCTATCTTCTGCACATGGCTAAGTCAT  450

seq1  TGTATTCAGGAAAGCAGCAGCTGCAGCTACCTGCACACAGCCTGTAAGTC  500
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGTATTCAGGAAAGCTGCAGCTGCAGCTACCTGCACACAGCCTGTAAGTC  500

seq1  CCTTGCTTACACAGAAAGAAGTTTTACTGAGTACTCTTTCATCAAACCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCTTACACAGAAAGAAGTTTTACTGAGTACTCTTTCATCAAACCTA  550

seq1  TCCCATGGGGGTTTTG-TTTGTTGTTTAGTTGTTT-GGTTCTTGTTTTCA  598
      |||||||||||||||| |||||||||   |||||| ||||||||||||||
seq2  TCCCATGGGGGTTTTGTTTTGTTGTTAGTTTGTTTGGGTTCTTGTTTTCA  600

seq1  GGTCA  603
      |||||
seq2  GGTCA  605

seq1: chr8_86576587_86577761
seq2: B6Ng01-342B04.g_67_1238 (reverse)

seq1  AGAGATGAGTCCACGCAATTTCTCTCATAAAATGTCACTGGAAGCACCAT  50
      |||||||||| ||||| |||||||||||||||| ||||||||||||||||
seq2  AGAGATGAGT-CACGC-ATTTCTCTCATAAAATTTCACTGGAAGCACCAT  48

seq1  GC-TACACCACCC-AGAGCAACACCACTTCACACAAACACAAGCATG-TC  97
      || ||| |||||| ||||| ||| |||||||||||||||| |||||| ||
seq2  GCTTACCCCACCCTAGAGC-ACA-CACTTCACACAAACAC-AGCATGTTC  95

seq1  TAAGCGT-GAGTTTCCCCAGGGTTCCTGGCATTCATAGTTGGGATGCTGT  146
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCGTGGAGTTTCCCCAGGGTTCCTGGCATTCATAGTTGGGATGCTGT  145

seq1  CAGATCTCCCCTTTCAGGGCTAAATCAACACACACTCACACAATGAATTA  196
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CAGATCTCCCCTTTCAGGGCTAAATC-ACACACACTCACACAATGAATTA  194

seq1  AAACTGTTTGCTTATAGCCTTATCAGCAGAGAGCATAGCAAGTGTTGGCT  246
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AAACTGTTTGCTTATAGCC-TATCAGCAGAGAGCATAGCAAGTGTTGGCT  243

seq1  GTTGGCCAGCCTGACCTCCCATAGGCCCTGAGGAGAAAGCTTGTATGTCC  296
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GTTGGCCAGCCTGACCTCCCATAGGCCATGAGGAGAAAGCTTGTATGTCC  293

seq1  TCCCTGTGCCACAGCTAGGCAGCACAGCTCCAGGGCTCAGCACGGTCACC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTGCCACAGCTAGGCAGCACAGCTCCAGGGCTCAGCACGGTCACC  343

seq1  GGTTCCTCCTCTGTAGCCACCACCCCTTCATTGATCTCTTATTCATATTA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCTCCTCTGTAGCCACCACCCCTTCATTGATCTCTTATTCATATTA  393

seq1  AGGTGGTTTATCAGTTGCTGAGGAAATGAATGATGGATATTTCCTTCTCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGTTTATCAGTTGCTGAGGAAATGAATGATGGATATTTCCTTCTCA  443

seq1  GTTTGTTGTTTCTCTAAACTTCCTATCATTTTTTGTTCTGCTATTGCAAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTGTTTCTCTAAACTTCCTATCATTTTTTGTTCTGCTATTGCAAT  493

seq1  GTACTCCAAAGTGCCCTAGAACTCACGATCCTCCTGCCTACCCTCCATTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCCAAAGTGCCCTAGAACTCACGATCCTCCTGCCTACCCTCCATTG  543

seq1  TTCTGGGATTATACGTGCAAGCCGTGTGCACGCTATCTTTTTCATGATTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGATTATACGTGCAAGCCGTGTGCACGCTATCTTTTTCATGATTT  593

seq1  ATTTTTCTATGCATGGGTGTATCTGCCTGTATGTATTTTTGGTTGTGAGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTATGCATGGGTGTATCTGCCTGTATGTATTTTTGGTTGTGAGT  643

seq1  TATCTTTTTACAGCGGAGGCCATTTTTCTGGCCCTAGCCTGTATGTATGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTTTACAGCGGAGGCCATTTTTCTGGCCCTAGCCTGTATGTATGT  693

seq1  GCATCATGTGTGTGCAGTACCTGAAAAGGCCGGAAGATGGCATCAGGTTC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCATGTGTGTGCAGTACCTGAAAAGGCCGGAAGATGGCATCAGGTTC  743

seq1  CCTGGAAATTACAGATAACCCTTAGTTACCATGTGGGTCTGAGAGCTAAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAAATTACAGATAACCCTTAGTTACCATGTGGGTCTGAGAGCTAAA  793

seq1  CCCAAGTCCTCTGAAAAAGCAGCAAGTGCTCTTAATCACTGAGCCATTTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTCCTCTGAAAAAGCAGCAAGTGCTCTTAATCACTGAGCCATTTC  843

seq1  CTCAACTCCATAAGTATTTATTTTGAGATAAAGTCTCACTAGGTAACCCT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACTCCATAAGTATTTATTTTGAGATAAAGTCTCACTAGGTAACCCT  893

seq1  GGCTGGTCCTTGAACTCACAGAGTTTTGCCTGACTCCCTCTCCTAGGTAC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGTCCTTGAACTCACAGAGTTTTGCCTGACTCCCTCTCCTAGGTAC  943

seq1  TGGGATTAAAGGCATGCATCAGGACCTCTTAACTGCTGATCCATCTCTCC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTAAAGGCATGCATCAGGACCTCTTAACTGCTGATCCATCTCTCC  993

seq1  AGCCCCGAGACTTTTTTTTTTAAAAAGATTTTATTTTCAATTATGTGTAC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCGAGACTTTTTTTTTTAAAAAGATTTTATTTTCAATTATGTGTAC  1043

seq1  GTGTGTGTCTGCATGAGTTTGTACAAGTGAGTGCAGATGCCCTTGGAAAC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTCTGCATGAGTTTGTACAAGTGAGTGCAGATGCCCTTGGAAAC  1093

seq1  TGAAAGAGTGATAGATTCCCTGAAGCTGGAGTTCTGGGTGGTTGTGACTC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGAGTGATAGATTCCCTGAAGCTGGAGTTCTGGGTGGTTGTGACTC  1143

seq1  ACATGATGTGGGTGCTGAGAACTGAATTC  1175
      |||||||||||||||||||||||||||||
seq2  ACATGATGTGGGTGCTGAGAACTGAATTC  1172