BAC Information

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BAC

Clone NameB6Ng01-342M23
Chromosome8 (Build37)
Map Location 60,832,633 - 60,833,786
singlet/doubletsinglet
Overlap genenone
Upstream geneScrg1, Sap30, Hmgb2, LOC547012, Galnt7, LOC100040634, LOC100040711
Downstream gene4930431L04Rik, BC030500, LOC665116, LOC436042
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342M23.bB6Ng01-342M23.g
ACCGA125775GA125776
length1,1461,130
definitionB6Ng01-342M23.b B6Ng01-342M23.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaatattttttcactatatataaaagagtagaaaaaccaagtcaa
ataagacaagtacatttaaagcccctgattctgttatgtctgctaacgtt
ctattaaccaaagcaagtcatatatcgaaggctacctttaacacgcgcat
cgagcatacactttctgaacaggacaggaagataagtgactatgctgttc
attagtataagatatcatggactaagcttaatgccatgcatagactcttg
aaaataacctgaaacaggaaagttttactatttttcattttaaaatatta
ataaaagaaccaaagaagaaatacatcatcttcagttcagcatagtgaaa
actttgtaatggggtcataactattactgtccatttgcctctagcttaca
aagagattaagagaattataaactacaccagatgtcaggtagagagcgat
taatgattctcagtgaagtgaaagtgctgactgtgtctgaaaatgtaaag
atattataaagtggcacccaaattgaagcagactcaaactcaggaataac
ttctcactctatgcccaagtatgcactgcagcagccaagatgttttttct
gtggatccaatgaatgagcatggtggtaattatttataacattataaagg
acaagaaaataaagactaaaggaaagcataaaataatgtttttactctat
acttctttcaattggtagataattcatacacagaaagacaaggaaaattt
tcagaggccagaaagatcaaatgcaacagagtttgcacaaatcacaaggg
tatggtgatatattttcaataattcaagtgtctttaagagtgtcagtctt
tagaatgtctcttataatgtctataatattctattttcaatcacaactac
acactgaactttttttctaattgcacatcagtttgccacatcagtatatg
atcagataccaggtagtacagccatagttatccgtacacagagtaatgac
ctgtgccacttcacttacaatacagtagagcacaaaatcttgtgacattt
aaatggctatcatccatccagatctgtttcttcccagaggttttagactg
ctctatattctactgctcattttttaaagccccttgtgattagagc
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggacgcaatcccactaaa
atcagggactagagaaggctgcccactttctccctaccttagtatttgaa
gtattagccagagcaatttgacaacaaaaggagatcaaggggatataaat
tggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtat
atataagtgaccctaaaaattctaccagagaactcctaaacctgataaac
agcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggc
ctttctctatacaaagaataaacaggctgagaaagaaattagggaaacga
cacccttctcaatagtcacaaataatataaaatatcttggcttgactcta
actaaggaagtgaaagatctatatgataaaaacttcaaatctctgaagaa
aaaaattaaagaagatctcagaagatggaaagatctcccatgctcatgga
ttggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctac
cgattcaatgcaatccccatcaaaattccaactcaattcttcaacgaatt
agaaggagcaatttgcaaattcatctggaataacaaaaaacttaggatag
cacaaagtcttctcaaggataaaagaacctctggtggaatcaccatgcct
gatctaaagctttactacagagcaattgtgataaaaactgcatggtactg
gtatagagacagaccagtagaccaatggaaatagaattgaagacccagaa
atgaacccacacacctatggtcacttgatcttcgacaagggagctaaaac
catacagtggaagaaagacagcattttcacaattggtgctggcacactgg
ttgtatcatgtagaagatgcgaatcgatccatactatctcttgtactacg
tcaatctagtgaatcagactcacataaaacagagacactgactaaggaag
agaagtggggcattgctgagattgagcacagggaagtctgacgaacgcat
gctggtctgtaagatcggagattgcacatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_60832633_60833786
seq2: B6Ng01-342M23.b_47_1191

seq1  GAATTCAATATTTTTTCACTATATATAAAAGAGTAGAAAAACCAAGTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATATTTTTTCACTATATATAAAAGAGTAGAAAAACCAAGTCAA  50

seq1  ATAAGACAAGTACATTTAAAGCCCCTGATTCTGTTATGTCTGCTAACGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGACAAGTACATTTAAAGCCCCTGATTCTGTTATGTCTGCTAACGTT  100

seq1  CTATTAACCAAAGCAAGTCATATATCGAAGGCTACCTTTAACACGCGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAACCAAAGCAAGTCATATATCGAAGGCTACCTTTAACACGCGCAT  150

seq1  CGAGCATACACTTTCTGAACAGGACAGGAAGATAAGTGACTATGCTGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCATACACTTTCTGAACAGGACAGGAAGATAAGTGACTATGCTGTTC  200

seq1  ATTAGTATAAGATATCATGGACTAAGCTTAATGCCATGCATAGACTCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTATAAGATATCATGGACTAAGCTTAATGCCATGCATAGACTCTTG  250

seq1  AAAATAACCTGAAACAGGAAAGTTTTACTATTTTTCATTTTAAAATATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAACCTGAAACAGGAAAGTTTTACTATTTTTCATTTTAAAATATTA  300

seq1  ATAAAAGAACCAAAGAAGAAATACATCATCTTCAGTTCAGCATAGTGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGAACCAAAGAAGAAATACATCATCTTCAGTTCAGCATAGTGAAA  350

seq1  ACTTTGTAATGGGGTCATAACTATTACTGTCCATTTGCCTCTAGCTAACA  400
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ACTTTGTAATGGGGTCATAACTATTACTGTCCATTTGCCTCTAGCTTACA  400

seq1  AAGAGATTAAGAGAATTATAAACTACACCAGATGTCAGGTAGAGAGCGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGATTAAGAGAATTATAAACTACACCAGATGTCAGGTAGAGAGCGAT  450

seq1  TAATGATTCTCAGTGAAGTGAAAGTGCTGACTGTGTCTGAAAATGTAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATTCTCAGTGAAGTGAAAGTGCTGACTGTGTCTGAAAATGTAAAG  500

seq1  ATATTATAAAGTGGCACCCAAATTGAAGCAGACTCAAACTCAGGAATAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATAAAGTGGCACCCAAATTGAAGCAGACTCAAACTCAGGAATAAC  550

seq1  TTCTCACTCTATGCCCAAGTATGCACTGCAGCAGCCAAGATGTTTTTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCACTCTATGCCCAAGTATGCACTGCAGCAGCCAAGATGTTTTTTCT  600

seq1  GTGGATCCAATGAATGAGCATGGTGGTAATTATTTATAACATTATAAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATCCAATGAATGAGCATGGTGGTAATTATTTATAACATTATAAAGG  650

seq1  ACAAGAAAATAAAGACTAAAGGAAAGCATAAAATAATGTTTTTACTCTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAAAATAAAGACTAAAGGAAAGCATAAAATAATGTTTTTACTCTAT  700

seq1  ACTTCTTTCAATTGGTAGATAATTCATACACAGAAAGACAAGGAAAATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTTCAATTGGTAGATAATTCATACACAGAAAGACAAGGAAAATTT  750

seq1  TCAGAGGCCAGAAAGATCAAATGCAACAGAGTTTGCACAAATCACAAGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGCCAGAAAGATCAAATGCAACAGAGTTTGCACAAATCACAAGGG  800

seq1  TATGGTGATATATTTTCAATAATTCAAGTGTCTTTAAGAGTGTCAGTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTGATATATTTTCAATAATTCAAGTGTCTTTAAGAGTGTCAGTCTT  850

seq1  TAGAATGTCTCTTATAATGTCTATAATATTCTATTTTCAATCACAACTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATGTCTCTTATAATGTCTATAATATTCTATTTTCAATCACAACTAC  900

seq1  ACACTGAACTTTTTTTCTAATTGCACATCAGTTTGCCACATCAGTATATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGAACTTTTTTTCTAATTGCACATCAGTTTGCCACATCAGTATATG  950

seq1  ATCAAGAATAACAGGGAGTACAGCCAATAGTTATCCGTACAACAAGAGTA  1000
      ||||   ||| |||| ||||||||| |||||||||||||||   ||||| 
seq2  ATCA--GATACCAGGTAGTACAGCC-ATAGTTATCCGTACA--CAGAGT-  994

seq1  AATGACCTGTG-CACTTCACTTACATAACAGTAGAAGCACAAAATCTTGT  1049
      ||||||||||| |||||||||||||  ||||||| |||||||||||||| 
seq2  AATGACCTGTGCCACTTCACTTACAATACAGTAG-AGCACAAAATCTTG-  1042

seq1  TGACATTTAAAATGGCTTATTCTTTCTTTTCTAGAT-TGTTTCTTCACAG  1098
      |||||||| ||||||||   || | |   || |||| ||||||||| |||
seq2  TGACATTT-AAATGGCT--ATCATCC--ATCCAGATCTGTTTCTTCCCAG  1087

seq1  AAGTTTTAAGAATTGCTTCTATA-TCTACTGCTCA-TTTTTAAAGCCC--  1144
      | ||||||   | ||| |||||| ||||||||||| ||||||||||||  
seq2  AGGTTTTA--GACTGC-TCTATATTCTACTGCTCATTTTTTAAAGCCCCT  1134

seq1  -TTGATTAGAG  1154
        |||||||||
seq2  TGTGATTAGAG  1145