BAC Information

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BAC

Clone NameB6Ng01-342N22
Chromosome8 (Build37)
Map Location 108,335,570 - 108,484,859
singlet/doubletdoublet
Overlap geneRanbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4
Upstream geneBC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2
Downstream geneDpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342N22.bB6Ng01-342N22.g
ACCGA125815GA125816
length654983
definitionB6Ng01-342N22.b B6Ng01-342N22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,335,570 - 108,336,223)(108,483,886 - 108,484,859)
sequence
gaattcatttacctcacaagcaactgcaggatgaacctatctgatttgct
cttttcttctatgtgacggcaaaacagagaggagataacattcaacaaag
acagccaggaagcacagaaggacaaaagacaagtgcctggtggtagcaga
gtcatgagctactttcttacttcttagtttctgccactgactgccaaaat
cacaatgcaagctgcatctacaagagtctctctgtccccactgtggcttt
gcagtgcaagatcaagccaggtagagatccacctgagacctggagaaggg
gcagccacactgtaggtgggcaggataggccctcagctaaccacacccat
attatatctacccagaagttcttaccactgactcatagacaaaaggggtc
aacttcagaataggatggcagctactggggcccaggatgcctatcattca
ttcctgccctctctgccacagaagtagcaagcatgctaaaactggtcata
tggagagatgcaaacatatttgtcaacttggactcttcccatctctgttt
tccatatttcctataacatgaattctttgttgatgatgggtttgatttct
ttcttttttgttttctgtttgttttgtgtaagttggtgtgtgggtgtgcg
tggg
gaattcttttgtttgtttgttttttgtttttcgaaacagggtttttctgt
gtagccctggctgtcctggaactcactctgtagaccaggctggcctcaaa
ctcagaaatctgcctgtctctgcctcccaggtgctgggattaaaggcgtg
cgccaccaacgctggaattctttccctctctttccacaggacagggtaac
cacagagagaatagccctttcctttgccctttggacgcctccagaggaaa
tgactactatgaccggaacttggcactgtttgaggtatctaaggagccat
tcaggtgtggtcgtctggaaggggcttctccggacctctcagctaagcat
caggctggcttctcttccactcccaactgccctctctttgcagccatcca
ggctatggatctcatggccctttcaatacacttcaccttcccagaccccc
ttgcaaccttacgtctgtcctccagggccagtatcctttgccttccttgc
agcccctcaccaaggtgaccacttcctcctcccctccattcctagggcct
ctcccagcccatggctctgctgtggatagattctttcctttctcctttcc
tattggctcttccagctgttaccctctggttacagaggcttgttttccct
ccagcctctgtcccactctgccctccatagctagagctgcagggaatgtg
tctctggaaagattcccatgtttgtgccttccaacgggaaatttcccttt
ctggacccaagctgagaagtaagatctggatttaagacatggttcagggt
cctaaactccgaacctgtacattcatctgcctcaacagccaagtaatgtc
agcttctcggtctccacacattccaaagggcctacatcttcactcatcac
tccctaaccctggcttcctgtgtataaggatcaagaagggacataaaagc
ttagacagtggggcagaatgggatgagttcaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_108335570_108336223
seq2: B6Ng01-342N22.b_47_700

seq1  GAATTCATTTACCTCACAAGCAACTGCAGGATGAACCTATCTGATTTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTACCTCACAAGCAACTGCAGGATGAACCTATCTGATTTGCT  50

seq1  CTTTTCTTCTATGTGACGGCAAAACAGAGAGGAGATAACATTCAACAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTCTATGTGACGGCAAAACAGAGAGGAGATAACATTCAACAAAG  100

seq1  ACAGCCAGGAAGCACAGAAGGACAAAAGACAAGTGCCTGGTGGTAGCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCAGGAAGCACAGAAGGACAAAAGACAAGTGCCTGGTGGTAGCAGA  150

seq1  GTCATGAGCTACTTTCTTACTTCTTAGTTTCTGCCACTGACTGCCAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGAGCTACTTTCTTACTTCTTAGTTTCTGCCACTGACTGCCAAAAT  200

seq1  CACAATGCAAGCTGCATCTACAAGAGTCTCTCTGTCCCCACTGTGGCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATGCAAGCTGCATCTACAAGAGTCTCTCTGTCCCCACTGTGGCTTT  250

seq1  GCAGTGCAAGATCAAGCCAGGTAGAGATCCACCTGAGACCTGGAGAAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGCAAGATCAAGCCAGGTAGAGATCCACCTGAGACCTGGAGAAGGG  300

seq1  GCAGCCACACTGTAGGTGGGCAGGATAGGCCCTCAGCTAACCACACCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCACACTGTAGGTGGGCAGGATAGGCCCTCAGCTAACCACACCCAT  350

seq1  ATTATATCTACCCAGAAGTTCTTACCACTGACTCATAGACAAAAGGGGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATCTACCCAGAAGTTCTTACCACTGACTCATAGACAAAAGGGGTC  400

seq1  AACTTCAGAATAGGATGGCAGCTACTGGGGCCCAGGATGCCTATCATTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCAGAATAGGATGGCAGCTACTGGGGCCCAGGATGCCTATCATTCA  450

seq1  TTCCTGCCCTCTCTGCCACAGAAGTAGCAAGCATGCTAAAACTGGTCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCCCTCTCTGCCACAGAAGTAGCAAGCATGCTAAAACTGGTCATA  500

seq1  TGGAGAGATGCAAACATATTTGTCAACTTGGACTCTTCCCATCTCTGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGATGCAAACATATTTGTCAACTTGGACTCTTCCCATCTCTGTTT  550

seq1  TCCATATTTCCTATAACATGAATTCTTTGTTGATGATGGGTTTGATTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATATTTCCTATAACATGAATTCTTTGTTGATGATGGGTTTGATTTCT  600

seq1  TTCTTTTTTGTTTTCTGTTTGTTTTGTGTAAGTTGGTGTGTGGGTGTGCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTTGTTTTCTGTTTGTTTTGTGTAAGTTGGTGTGTGGGTGTGCG  650

seq1  TGGG  654
      ||||
seq2  TGGG  654

seq1: chr8_108483886_108484859
seq2: B6Ng01-342N22.g_69_1051 (reverse)

seq1  TGTG-ACTC-TCCCA-TCTG-CCCACTGTCTTAAGCTTTTATGTCCCTTC  46
      |||| |||| ||||| |||| ||||||||| |||||||||||||||||||
seq2  TGTGAACTCATCCCATTCTGCCCCACTGTC-TAAGCTTTTATGTCCCTTC  49

seq1  -TGATCC-TATACACAGGAAGCCA-GGTTA-GGAGTGATGAGTGAAGATG  92
       |||||| |||||||||||||||| ||||| |||||||||||||||||||
seq2  TTGATCCTTATACACAGGAAGCCAGGGTTAGGGAGTGATGAGTGAAGATG  99

seq1  TAGGCCCTTT-GAATGTGTGGAGACCGAGAAGCTGACATTACTTGGCTG-  140
      |||||||||| |||||||||||||||||||||||||||||||||||||| 
seq2  TAGGCCCTTTGGAATGTGTGGAGACCGAGAAGCTGACATTACTTGGCTGT  149

seq1  TGAGGCAGATGAATGTACAGGTTCGGAGTTTAGGACCCTGAACCATGTCT  190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCAGATGAATGTACAGGTTCGGAGTTTAGGACCCTGAACCATGTCT  199

seq1  TAAATCCAGATCTTACTTCTCAGCTTGGGTCCAGAAAGGGAAATTTCCCG  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCCAGATCTTACTTCTCAGCTTGGGTCCAGAAAGGGAAATTTCCCG  249

seq1  TTGGAAGGCACAAACATGGGAATCTTTCCAGAGACACATTCCCTGCAGCT  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGGCACAAACATGGGAATCTTTCCAGAGACACATTCCCTGCAGCT  299

seq1  CTAGCTATGGAGGGCAGAGTGGGACAGAGGCTGGAGGGAAAACAAGCCTC  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTATGGAGGGCAGAGTGGGACAGAGGCTGGAGGGAAAACAAGCCTC  349

seq1  TGTAACCAGAGGGTAACAGCTGGAAGAGCCAATAGGAAAGGAGAAAGGAA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACCAGAGGGTAACAGCTGGAAGAGCCAATAGGAAAGGAGAAAGGAA  399

seq1  AGAATCTATCCACAGCAGAGCCATGGGCTGGGAGAGGCCCTAGGAATGGA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCTATCCACAGCAGAGCCATGGGCTGGGAGAGGCCCTAGGAATGGA  449

seq1  GGGGAGGAGGAAGTGGTCACCTTGGTGAGGGGCTGCAAGGAAGGCAAAGG  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGAGGAAGTGGTCACCTTGGTGAGGGGCTGCAAGGAAGGCAAAGG  499

seq1  ATACTGGCCCTGGAGGACAGACGTAAGGTTGCAAGGGGGTCTGGGAAGGT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGGCCCTGGAGGACAGACGTAAGGTTGCAAGGGGGTCTGGGAAGGT  549

seq1  GAAGTGTATTGAAAGGGCCATGAGATCCATAGCCTGGATGGCTGCAAAGA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGTATTGAAAGGGCCATGAGATCCATAGCCTGGATGGCTGCAAAGA  599

seq1  GAGGGCAGTTGGGAGTGGAAGAGAAGCCAGCCTGATGCTTAGCTGAGAGG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCAGTTGGGAGTGGAAGAGAAGCCAGCCTGATGCTTAGCTGAGAGG  649

seq1  TCCGGAGAAGCCCCTTCCAGACGACCACACCTGAATGGCTCCTTAGATAC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGAGAAGCCCCTTCCAGACGACCACACCTGAATGGCTCCTTAGATAC  699

seq1  CTCAAACAGTGCCAAGTTCCGGTCATAGTAGTCATTTCCTCTGGAGGCGT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACAGTGCCAAGTTCCGGTCATAGTAGTCATTTCCTCTGGAGGCGT  749

seq1  CCAAAGGGCAAAGGAAAGGGCTATTCTCTCTGTGGTTACCCTGTCCTGTG  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGGGCAAAGGAAAGGGCTATTCTCTCTGTGGTTACCCTGTCCTGTG  799

seq1  GAAAGAGAGGGAAAGAATTCCAGCGTTGGTGGCGCACGCCTTTAATCCCA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGAGGGAAAGAATTCCAGCGTTGGTGGCGCACGCCTTTAATCCCA  849

seq1  GCACCTGGGAGGCAGAGACAGGCAGATTTCTGAGTTTGAGGCCAGCCTGG  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTGGGAGGCAGAGACAGGCAGATTTCTGAGTTTGAGGCCAGCCTGG  899

seq1  TCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAAAAACCCTGTT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAAAAACCCTGTT  949

seq1  TCGAAAAACAAAAAACAAACAAACAAAAGAATTC  974
      ||||||||||||||||||||||||||||||||||
seq2  TCGAAAAACAAAAAACAAACAAACAAAAGAATTC  983