BAC Information

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BAC

Clone NameB6Ng01-343G08
Chromosome8 (Build37)
Map Location 38,969,533 - 38,970,739
singlet/doubletsinglet
Overlap geneSgcz
Upstream geneA730069N07Rik, AI429214, LOC666877, LOC100041616, 1700016D18Rik, LOC641121, LOC621149
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343G08.bB6Ng01-343G08.g
ACCGA126185GA126186
length9341,212
definitionB6Ng01-343G08.b B6Ng01-343G08.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctggaaatgaaacatttatgaatttggacaggagcgccagagaaa
agcatcaccaaaggcgtacaaaacatgaagggcaaaatatatggcatagt
agacatgatagaaaaaaacatactgtgttccattcagctgaattactggc
caagggagacccatggaaattcccaaagagtcaggctgttgttaaaccaa
agggctgctctccacaaagagacagtgggactccactgccaagagtatta
cccacttaactgagtgaacatggagatgttgggcttgtgcctacatggaa
ccttcacccctatattctaaagtctttggtgagggaagatatttggctgg
ctactaaaagagaaacatgaaaaacaatgcagccacaaagcctttgacct
actatcggtcctgcctgcaaaacatgctaaggcaatgatgacacagcact
tgtgggtatagctgaccaatgtctgatttaacttaagttcctaaacatga
tattgcttgcataatcaagaatcagagactaggaaccccagagatctact
tgtcttagtgtacacacacacacacacacacacacacactcacacacaca
cacaaatatgtctttgactctatgtgtgtatgtatgtgtatgtatgtgta
agtgagcatgtttgtatatgatatgagtcctaataatattctgctgattt
cttatccggtcattatcagacaggtttcctttggcagaagggaacagatg
aggaggcccagagctagactttatgtagaggggagggctatatgggattt
ttccatcaaatccctcccctcaaagctcaggaaacccaaagggagatttt
aaggtccagatgggacacgcaaaatttatatgccccagtacaggggaatg
ccagggccaaaagggggagtgggtgggtagggaa
gaattccaaaaatgaatggaaggcgctatggaatcacctgttatatcacc
taatttattcactacatatttattgtttttcttccagttcaagtaacaga
acaagtgtttcatagtatttgttttgtaaactgctggtattaacatatga
atatatttaaaaggtaatatcattttcagctttcaccaaatctaaactat
tacctcacattaaatcaaaatgtttagggctgagtggcatttttaaatca
cttcaatgattaaaaggctgtaaggatacaggcgcaaatgtaatgtataa
catatgcatatgaaccatggataggatgacatcctaaatatttggtgtta
ataaaagtatatttacatatctgatcattttatgagttcataaaatattc
aattttgatttttaccaaaataagttcagtttttgactttaagaaatact
agttttctctgcaataacaatatgtcagatacaccatgactatgtataaa
ctataatcgatattttgaataattatttaatagccagaattttatcaata
cataattaagtgtatgatgaacagttaaatgcctaaaacttaaaacattt
tgtaaaatatattgctatgtagacaaaaatctaaatcagttttaagacct
gatcctatcaaatataattcttcaagatgagctattaaatgaaatgccca
agaattttcccaagataccaatttgtaatatgcagcatcaggtcacaaaa
ttgatatatagtataacaaggaatgttttatttcatttcctagaaatgtt
ttttttacttctttttcaaaaggaattcaataacttaaatattaatttaa
atgtacatataaaatatagtcataactgatgccagctttgccatattctg
taaagagtataatacacttacattttcaaaatctatgacttcttgctcag
tagaatgtacataaatttctttaaagctccaagtgtatttcaatatatat
aaagaagagctgttcttgtacagagcttagtatttgtgaccttgaaactc
tgtacaatccagactgaatattgctatgatcacatcagtactaaagtatt
catctctgaatgttgcacattttgccttcagatattcttatgttctgaga
ataataatctaacgggatgaagatataagccatgtagaagaagtgcacat
ggtgtgtgtgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_38969533_38970739
seq2: B6Ng01-343G08.g_67_1278 (reverse)

seq1  AACACACA-------TGCA---TTTCTACAT-GCTAATA--CTCATCCCC  37
      ||||||||       ||||    |||||||| ||| |||   ||||||| 
seq2  AACACACACACCATGTGCACTTCTTCTACATGGCTTATATCTTCATCCCG  50

seq1  TTAGATTTATTTATCTCAGAACAT-AGAATA-CTGAAGGGCAAAAATGTT  85
      ||||| |||||  ||||||||||| |||||| |||||||   ||||||| 
seq2  TTAGA-TTATTATTCTCAGAACATAAGAATATCTGAAGG--CAAAATGTG  97

seq1  GCACA-TCAGAGATGAATACTTTAGTACCTGATGTGATTCATTAGCAATA  134
        ||| ||||||||||||||||||||| ||||||||| ||| ||||||||
seq2  CAACATTCAGAGATGAATACTTTAGTA-CTGATGTGA-TCA-TAGCAATA  144

seq1  TTCAGTCTGGATTTGTACAGAGGTTTCCAAGGTTCCACAAATACTAAGCT  184
      ||||||||||| ||||||||||  || ||||||  |||||||||||||||
seq2  TTCAGTCTGGA-TTGTACAGAG--TTTCAAGGT--CACAAATACTAAGCT  189

seq1  CTGTAC-AGAACAGCTCTTCTTTTATAATATATTGAAATACACTTGGAGC  233
      |||||| ||||||||||||| ||||| |||||||||||||||||||||||
seq2  CTGTACAAGAACAGCTCTTC-TTTAT-ATATATTGAAATACACTTGGAGC  237

seq1  TTTAAAG-AATTTATGTACATTCTACTGAGCAAGAAGTCATAGATTTTGA  282
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGAAATTTATGTACATTCTACTGAGCAAGAAGTCATAGATTTTGA  287

seq1  AAATGTAAGTGTATTATACTCTTTACAGAATATGGCAAAGCTGGCATCAG  332
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAAGTGTATTATACTCTTTACAGAATATGGCAAAGCTGGCATCAG  337

seq1  TTATGACTATATTTTATATGTACATTTAAATTAATATTTAAGTTATTGAA  382
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGACTATATTTTATATGTACATTTAAATTAATATTTAAGTTATTGAA  387

seq1  TTCCTTTTGAAAAAGAAGTAAAAAAAACATTTCTAGGAAATGAAATAAAA  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTTGAAAAAGAAGTAAAAAAAACATTTCTAGGAAATGAAATAAAA  437

seq1  CATTCCTTGTTATACTATATATCAATTTTGTGACCTGATGCTGCATATTA  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTTGTTATACTATATATCAATTTTGTGACCTGATGCTGCATATTA  487

seq1  CAAATTGGTATCTTGGGAAAATTCTTGGGCATTTCATTTAATAGCTCATC  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTGGTATCTTGGGAAAATTCTTGGGCATTTCATTTAATAGCTCATC  537

seq1  TTGAAGAATTATATTTGATAGGATCAGGTCTTAAAACTGATTTAGATTTT  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGAATTATATTTGATAGGATCAGGTCTTAAAACTGATTTAGATTTT  587

seq1  TGTCTACATAGCAATATATTTTACAAAATGTTTTAAGTTTTAGGCATTTA  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTACATAGCAATATATTTTACAAAATGTTTTAAGTTTTAGGCATTTA  637

seq1  ACTGTTCATCATACACTTAATTATGTATTGATAAAATTCTGGCTATTAAA  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTCATCATACACTTAATTATGTATTGATAAAATTCTGGCTATTAAA  687

seq1  TAATTATTCAAAATATCGATTATAGTTTATACATAGTCATGGTGTATCTG  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATTCAAAATATCGATTATAGTTTATACATAGTCATGGTGTATCTG  737

seq1  ACATATTGTTATTGCAGAGAAAACTAGTATTTCTTAAAGTCAAAAACTGA  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTGTTATTGCAGAGAAAACTAGTATTTCTTAAAGTCAAAAACTGA  787

seq1  ACTTATTTTGGTAAAAATCAAAATTGAATATTTTATGAACTCATAAAATG  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATTTTGGTAAAAATCAAAATTGAATATTTTATGAACTCATAAAATG  837

seq1  ATCAGATATGTAAATATACTTTTATTAACACCAAATATTTAGGATGTCAT  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATATGTAAATATACTTTTATTAACACCAAATATTTAGGATGTCAT  887

seq1  CCTATCCATGGTTCATATGCATATGTTATACATTACATTTGCGCCTGTAT  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCCATGGTTCATATGCATATGTTATACATTACATTTGCGCCTGTAT  937

seq1  CCTTACAGCCTTTTAATCATTGAAGTGATTTAAAAATGCCACTCAGCCCT  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACAGCCTTTTAATCATTGAAGTGATTTAAAAATGCCACTCAGCCCT  987

seq1  AAACATTTTGATTTAATGTGAGGTAATAGTTTAGATTTGGTGAAAGCTGA  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTTTGATTTAATGTGAGGTAATAGTTTAGATTTGGTGAAAGCTGA  1037

seq1  AAATGATATTACCTTTTAAATATATTCATATGTTAATACCAGCAGTTTAC  1082
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATATTACCTTTTAAATATATTCATATGTTAATACCAGCAGTTTAC  1087

seq1  AAAACAAATACTATGAAACACTTGTTCTGTTACTTGAACTGGAAGAAAAA  1132
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAATACTATGAAACACTTGTTCTGTTACTTGAACTGGAAGAAAAA  1137

seq1  CAATAAATATGTAGTGAATAAATTAGGTGATATAACAGGTGATTCCATAG  1182
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAATATGTAGTGAATAAATTAGGTGATATAACAGGTGATTCCATAG  1187

seq1  CGCCTTCCATTCATTTTTGGAATTC  1207
      |||||||||||||||||||||||||
seq2  CGCCTTCCATTCATTTTTGGAATTC  1212