BAC Information

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BAC

Clone NameB6Ng01-344G13
Chromosome8 (Build37)
Map Location 17,211,562 - 17,370,876
singlet/doubletdoublet
Overlap geneCsmd1
Upstream genenone
Downstream geneLOC665638, LOC100040466
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344G13.bB6Ng01-344G13.g
ACCGA126903GA126904
length7801,218
definitionB6Ng01-344G13.b B6Ng01-344G13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,211,562 - 17,212,370)(17,369,656 - 17,370,876)
sequence
gaattccatacttatatataacagttagctttgttctgctccaaacagcc
agatatgcttttgttcccagttttatgtgatgtttgatgctgcactcagg
gcctcatacattacattcacctatacctatacctatacctatacctatac
ctatacctatacctatacctatacctatacctatacctatacctatacct
atacctatacctatacctatacctatacctatacagtaaagaactctctg
ccaactgagtttcatcctgagcaataattaggtgaccaggtgatgaagga
cgagaaacttggagctgaaagacaatgtgactatcaggatctcttccact
gtaacctccagagggtaccaggcctgccactctgggctccttcaccttgt
attctcttgacatacagatcatcctcttcagttcctggccttgtgactgg
ccaaggcaggctctacatgtggggttagcatgaggacagcatctctgagc
agcatccacaacagctcaacccatggctacctaagccttaatcaagtatg
tgtcaccattccagttaaatagcatgatacttgatttatctggccattga
tccacaattgcccttgagacctcatagtgacagtggagcagagacagaca
tcagctagctgcatctcatctaatgtccttattgtgcagtgacctccagc
ctctgactgtcatactgtcacactaccatctgcagagtagcactagcaga
gctctcagtgatatctactcagatgcatcc

gaattcattcattgatgtttgattgttgtgcttaggatgaaaagcaagtc
tgaaaatgtctgatatttatttttagatattatcagttatatccaaaaat
acagaaaataagattcatttgtaagactaagctgacacaaaacctttgag
ttaagataggatcaatgttaggaatttttattcatttttttccagattta
gcaatttttttctgcagatgctctctgtgtaggagtgatttgcttatttt
gtatgagaaaaatcattactgccattttatatttgatttttaagcagttt
tagaatattctttcagtttacaaattaatcagtggaactcctgttggtga
tttagagagcttaatggatttttagaagtaatttcccttcactaagtaaa
tatcttaatttactagagggatcttcaaagatgggctcatgttttactat
ttctcttggaatcccattttggtagaagtttttacagtcgagtgacacaa
gaatgctttctgtgtacttagacaatatccacttttgtaattatcttcaa
tagatgcataatctgatatatgaatataagtaaatttacctgcacagagg
tgggacagatcacctgattaaagatatgtctgtactttccttctacaaat
gaactctgagaactgtgtgggccctgtgagaaatgtacacaagaaaaatc
aggcatggcatgtaagggcttttttgttttgttttgttttaatttgtttg
ttttggttttacattggatgtatgtgtgtatgtatgtatttatttatttt
tattgaatatttttctttatttacatttcagatgttattccctttcctgc
tgtccctcccccacacacactttttcatcccagcactcaggaggcagagt
caagcagatctctgtgagtccaaggccagacagtctacatagtaagttcc
agccagccaggataatgagtaagacccttctaaagaattctgagtgattc
tgggggagttggagtcaaatagttgaagcttcccttggcaagagattcaa
tccacgtcactgcttgaactctgaagttaggaaatcacctctgattcctt
gagccgtgcctcacgccctcctcacttgtctcaagaaacagactggatgg
ctggggcttcctggccgttccaaattcggatatctagttcctacgataat
gtaccctctttgaacaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_17211562_17212370
seq2: B6Ng01-344G13.b_46_825

seq1  GAATTCCATACTTATATATAACAGTTAGCTTTGTTCTGCTCCAAACAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATACTTATATATAACAGTTAGCTTTGTTCTGCTCCAAACAGCC  50

seq1  AGATATGCTTTTGTTCCCAGTTTTATGTGATGTTTGATGCTGCACTCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATGCTTTTGTTCCCAGTTTTATGTGATGTTTGATGCTGCACTCAGG  100

seq1  GCCTCATACATTACATTCACCTATACCTATACCTATACCTATACCTATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCATACATTACATTCACCTATACCTATACCTATACCTATACCTATAC  150

seq1  CTATACCTATACCTATACCTATACCTATACCTATACCTATACCTATACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACCTATACCTATACCTATACCTATACCTATACCTATACCTATACCT  200

seq1  ATACCTATACCTATACCTATACCTATACCTATACAGTAAAGAACTCTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTATACCTATACCTATACCTATACCTATACAGTAAAGAACTCTCTG  250

seq1  CCAACTGAGTTTCATCCTGAGCAATAATTAGGTGACCAGGTGATGAAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTGAGTTTCATCCTGAGCAATAATTAGGTGACCAGGTGATGAAGGA  300

seq1  CGAGAAACTTGGAGCTGAAAGACAATGTGACTATCAGGATCTCTTCCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAAACTTGGAGCTGAAAGACAATGTGACTATCAGGATCTCTTCCACT  350

seq1  GTAACCTCCAGAGGGTACCAGGCCTGCCACTCTGGGCTCCTTCACCTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCTCCAGAGGGTACCAGGCCTGCCACTCTGGGCTCCTTCACCTTGT  400

seq1  ATTCTCTTGACATACAGATCATCCTCTTCAGTTCCTGGCCTTGTGACTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTTGACATACAGATCATCCTCTTCAGTTCCTGGCCTTGTGACTGG  450

seq1  CCAAGGCAGGCTCTACATGTGGGGTTAGCATGAGGACAGCATCTCTGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGCAGGCTCTACATGTGGGGTTAGCATGAGGACAGCATCTCTGAGC  500

seq1  AGCATCCACAACAGCTCAACCCATGGCTACCTAAGCCTTAATCAAGGTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGCATCCACAACAGCTCAACCCATGGCTACCTAAGCCTTAATCAA-GTAT  549

seq1  GTGTCACCATTCCAGTTAAAAATAGCATGATACTTTGATTTTTATCTGGC  600
      |||||||||||||||||  |||||||||||||| ||||  ||||||||||
seq2  GTGTCACCATTCCAGTT--AAATAGCATGATAC-TTGA--TTTATCTGGC  594

seq1  CATTGATCCACAAATTGCCCCCTTGAGACCTCATAGTGACAGTGGGAGCA  650
      ||||||||||| |||||  |||||||||||||||||||||||| ||||||
seq2  CATTGATCCAC-AATTG--CCCTTGAGACCTCATAGTGACAGT-GGAGCA  640

seq1  GGAAGACAGACATTCAGCTAAGCTGCATCTCAAATCTAATGTCCTTATTG  700
      |  ||||||||| |||||| |||||||||||  |||||||||||||||||
seq2  G--AGACAGACA-TCAGCT-AGCTGCATCTC--ATCTAATGTCCTTATTG  684

seq1  TGCAGTTGAACCCTCCCCAGGCCTCTGAACTGTCATACTGTCACACTACC  750
      ||||| |||  |||||    ||||||| ||||||||||||||||||||||
seq2  TGCAG-TGA--CCTCC---AGCCTCTG-ACTGTCATACTGTCACACTACC  727

seq1  ATCTGCAGAGTTAGCACTAGCAGAGCTCTCAGTGATTAACCTACTCAAGG  800
      |||||||||| |||||||||||||||||||||||||  | |||||||  |
seq2  ATCTGCAGAG-TAGCACTAGCAGAGCTCTCAGTGAT--ATCTACTCA--G  772

seq1  ATGCCATCC  809
      ||| |||||
seq2  ATG-CATCC  780


seq1: chr8_17369656_17370876
seq2: B6Ng01-344G13.g_67_1284 (reverse)

seq1  TGTTTTCAAAGAGGGTCATTTACTGGCTGAGAACTTAGTAATCAGATGTG  50
      ||| ||||||||||||   |||  |  |  |||| |||  ||| ||  | 
seq2  TGTGTTCAAAGAGGGTACATTATCG--TAGGAAC-TAGATATCCGAATTT  47

seq1  GTGACTGGCCAGGAAGCCCCAGCCATCCACGTCTGTTTCCTGAG--CAGT  98
      | ||  ||||||||||||||||||||||| ||||||||| ||||   |||
seq2  G-GAACGGCCAGGAAGCCCCAGCCATCCA-GTCTGTTTCTTGAGACAAGT  95

seq1  GAGGA--GCGTGA-GCACGTGCTCCAAGAGATCCAGGGTGATTTCCCTAA  145
      |||||  |||||| ||||| ||| ||||  |||   |||||||| |||||
seq2  GAGGAGGGCGTGAGGCACG-GCT-CAAGGAATCAGAGGTGATTT-CCTAA  142

seq1  C-TCAG-GTTCCAGCCAGTGAACGTGGATGATTTCTCTTGCAAAGGGAAG  193
      | |||| |||| || ||||| ||||||||    |||||||| ||||||||
seq2  CTTCAGAGTTCAAG-CAGTG-ACGTGGATTGAATCTCTTGCCAAGGGAAG  190

seq1  CCTTCCAACTA-TTGACT-CAACT-CCCCAGAATCACTCAGAATTCTTTA  240
      |  | |||||| |||||| ||||| |||||||||||||||||||||||||
seq2  C--TTCAACTATTTGACTCCAACTCCCCCAGAATCACTCAGAATTCTTTA  238

seq1  GAAGGGTCTTACTCATTAATCCTGGCTGGCCTGGAACTTACTATGTAGAC  290
      ||||||||||||||||| ||||||||||| ||||||||||||||||||||
seq2  GAAGGGTCTTACTCATT-ATCCTGGCTGG-CTGGAACTTACTATGTAGAC  286

seq1  TGTCTTGGCCTTGGACTCACAGAGATCTGCTTGACTCTGCCTCCTGAGTG  340
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTC-TGGCCTTGGACTCACAGAGATCTGCTTGACTCTGCCTCCTGAGTG  335

seq1  CTGGGATG-AAAAGTGTGTGTGGGGGAGGGACAGCAGGAAAGGGAATAAC  389
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATGAAAAAGTGTGTGTGGGGGAGGGACAGCAGGAAAGGGAATAAC  385

seq1  ATCTGAAATGTAAATAAAG-AAAATATTCAATAAAAATAAATAAATACAT  438
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATCTGAAATGTAAATAAAGAAAAATATTCAATAAAAATAAATAAATACAT  435

seq1  ACATACACACATACATCCAATGTAAAACCAAAACAAACAAATTAAAACAA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACACACATACATCCAATGTAAAACCAAAACAAACAAATTAAAACAA  485

seq1  AACAAAACAAAAAAGCCCTTACATGCCATGCCTGATTTTTCTTGTGTACA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACAAAAAAGCCCTTACATGCCATGCCTGATTTTTCTTGTGTACA  535

seq1  TTTCTCACAGGGCCCACACAGTTCTCAGAGTTCATTTGTAGAAGGAAAGT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCACAGGGCCCACACAGTTCTCAGAGTTCATTTGTAGAAGGAAAGT  585

seq1  ACAGACATATCTTTAATCAGGTGATCTGTCCCACCTCTGTGCAGGTAAAT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACATATCTTTAATCAGGTGATCTGTCCCACCTCTGTGCAGGTAAAT  635

seq1  TTACTTATATTCATATATCAGATTATGCATCTATTGAAGATAATTACAAA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTATATTCATATATCAGATTATGCATCTATTGAAGATAATTACAAA  685

seq1  AGTGGATATTGTCTAAGTACACAGAAAGCATTCTTGTGTCACTCGACTGT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGATATTGTCTAAGTACACAGAAAGCATTCTTGTGTCACTCGACTGT  735

seq1  AAAAACTTCTACCAAAATGGGATTCCAAGAGAAATAGTAAAACATGAGCC  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTTCTACCAAAATGGGATTCCAAGAGAAATAGTAAAACATGAGCC  785

seq1  CATCTTTGAAGATCCCTCTAGTAAATTAAGATATTTACTTAGTGAAGGGA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTGAAGATCCCTCTAGTAAATTAAGATATTTACTTAGTGAAGGGA  835

seq1  AATTACTTCTAAAAATCCATTAAGCTCTCTAAATCACCAACAGGAGTTCC  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTTCTAAAAATCCATTAAGCTCTCTAAATCACCAACAGGAGTTCC  885

seq1  ACTGATTAATTTGTAAACTGAAAGAATATTCTAAAACTGCTTAAAAATCA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATTAATTTGTAAACTGAAAGAATATTCTAAAACTGCTTAAAAATCA  935

seq1  AATATAAAATGGCAGTAATGATTTTTCTCATACAAAATAAGCAAATCACT  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAAATGGCAGTAATGATTTTTCTCATACAAAATAAGCAAATCACT  985

seq1  CCTACACAGAGAGCATCTGCAGAAAAAAATTGCTAAATCTGGAAAAAAAT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACACAGAGAGCATCTGCAGAAAAAAATTGCTAAATCTGGAAAAAAAT  1035

seq1  GAATAAAAATTCCTAACATTGATCCTATCTTAACTCAAAGGTTTTGTGTC  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAAATTCCTAACATTGATCCTATCTTAACTCAAAGGTTTTGTGTC  1085

seq1  AGCTTAGTCTTACAAATGAATCTTATTTTCTGTATTTTTGGATATAACTG  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAGTCTTACAAATGAATCTTATTTTCTGTATTTTTGGATATAACTG  1135

seq1  ATAATATCTAAAAATAAATATCAGACATTTTCAGACTTGCTTTTCATCCT  1188
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATCTAAAAATAAATATCAGACATTTTCAGACTTGCTTTTCATCCT  1185

seq1  AAGCACAACAATCAAACATCAATGAATGAATTC  1221
      |||||||||||||||||||||||||||||||||
seq2  AAGCACAACAATCAAACATCAATGAATGAATTC  1218


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