BAC Information

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BAC

Clone NameB6Ng01-345P05
Chromosome8 (Build37)
Map Location 88,340,763 - 88,461,324
singlet/doubletdoublet
Overlap geneItfg1, LOC100040798, Phkb
Upstream geneDand5, Gadd45gip1, Rad23a, Calr, LOC546080, Farsa, Syce2, Gcdh, Klf1, Dnase2a, Mast1, Rtbdn, Rnaseh2a, LOC666841, Prdx2, Junb, Hook2, Best2, Asna1, 2310036O22Rik, Tnpo2, Fbxw9, EG436049, Dhps, 1500041N16Rik, BC056474, Man2b1, EG244556, EG624855, Olfr371, Vps35, Orc6l, D830007F02Rik, 4921524J17Rik, Gpt2, Dnaja2, Neto2
Downstream geneLOC671665, LOC100040165, Abcc12, Lonp2, Siah1a, ENSMUSG00000074178, BC004022, LOC666960
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-345P05.bB6Ng01-345P05.g
ACCGA127988GA127989
length8941,062
definitionB6Ng01-345P05.b B6Ng01-345P05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,340,763 - 88,341,426)(88,460,253 - 88,461,324)
sequence
gaattcaatgtaataattcacttaacaagtataataaaagacagagtggt
cttgctttcagaatacaacaattaaatgagtataaaaatagcattttctc
atttcattaaacacaaaacttaaacttgtgactgtaataaaagaaatgaa
tataccgtgaaaagttgtttaaaaattaaaaaattaatttcttttttaaa
aaaaattaggtatttatttaatttaaatttctaatgctatcccaaaagtc
ccccacaccctcacccaccgactcccccaaccactcactcccacttcttg
gccctggcgttcccctgtattgaggcatataaagtttgcacgaccaatgg
gcctctttcaaactgatggccgactaggccatcttctgatacatatgcag
ctagagacacgaggtccggggggtactggttagttcatattgttgttcca
cctatagggttgcagatccccctagttccttgggtactttctctagctcc
tccattgggggccctgtgatccattcaatagctgattgtgagcaccctcc
tctgtgtttgctaggccccggcatagtctcacaagagacagctatatcag
ggtcctttcagcaaaatcttgcttgtgtatgcaatggtgtaagtgtttgg
aaggtgattatgcgatggatccaagggtttggcagtctctagatggtcca
tcctttgtctcagctccaaactttgtctctgtaactccttccatgggtgt
tttgttcccaattctaagaaggggcaaagtatccacactttggtcttcat
tgttcttgagtttcatgtgttttgcaaattgtatcttatatcttgagtat
tctaagtttctgggctaatatccacttatcaatgagtatatatc
gaattcttacggagagtggagtcccacacagacatctcagcaaggagagc
acacccattaacgtgtgtgaatttatgacattggactccttcctttacca
cacaactgctaaaaagacagctctgagtaagaaataacactgatcctaac
caggaaggagtattgcttacctgatagtttctgggtttgtttggtgtttt
gttttttgctttttgggttttgtttttgttttttgttttttcgagacagg
gtttctctgtatagccctagctgtcctggaactcactttgtaggctagac
tggccttgaactcagaaatttgcctgcctctgactcccgagtgccaccac
gcccggccttttttttttttttactttttcatgtatgctttggtatgtca
actggttgactggttggttggttgtaggttgtgcctcatctgaagaggca
tttgtgactgtcctttctttttccatacctattcccattacttctgtgtg
gctacaagaaatgaccaattttgtttccatttctacctgaactaataaat
gaccaatatccatttagtaacattcagcacagagttatgttaaaaacagc
tacgctcttggccgcactttagaattttctgagcattaaaactctaaggg
gataactaaactctaaacagcgccttttatactaggtcaggaaggtgctt
atgtgtcatgagtgactgctttcagaattcctctgagcccaatgtacacg
taagattcaaaaacacgctaagaaatcatactggcagaacatttatacct
aagattgaaatgcctgcttaggcaggtcagattccagaagagtaaagctt
caacaagcagcaaggcagcagtcacagtggactgtgagtgagtgtgctct
atggagtgtgcatagaaaagaggggttcgctgttaaatagtaggcatggc
ctcagtacttcaaggaagcacgtcatgacaaaaccagccatcactacagc
atcacagcagacttgagagtcagtgccactccattttcttctttgcagct
agaggatctagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_88340763_88341426
seq2: B6Ng01-345P05.b_46_709

seq1  GAATTCAATGTAATAATTCACTTAACAAGTATAATAAAAGACAGAGTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGTAATAATTCACTTAACAAGTATAATAAAAGACAGAGTGGT  50

seq1  CTTGCTTTCAGAATACAACAATTAAATGAGTATAAAAATAGCATTTTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTTCAGAATACAACAATTAAATGAGTATAAAAATAGCATTTTCTC  100

seq1  ATTTCATTAAACACAAAACTTAAACTTGTGACTGTAATAAAAGAAATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATTAAACACAAAACTTAAACTTGTGACTGTAATAAAAGAAATGAA  150

seq1  TATACCGTGAAAAGTTGTTTAAAAATTAAAAAATTAATTTCTTTTTTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCGTGAAAAGTTGTTTAAAAATTAAAAAATTAATTTCTTTTTTAAA  200

seq1  AAAAATTAGGTATTTATTTAATTTAAATTTCTAATGCTATCCCAAAAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTAGGTATTTATTTAATTTAAATTTCTAATGCTATCCCAAAAGTC  250

seq1  CCCCACACCCTCACCCACCGACTCCCCCAACCACTCACTCCCACTTCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACACCCTCACCCACCGACTCCCCCAACCACTCACTCCCACTTCTTG  300

seq1  GCCCTGGCGTTCCCCTGTATTGAGGCATATAAAGTTTGCACGACCAATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGCGTTCCCCTGTATTGAGGCATATAAAGTTTGCACGACCAATGG  350

seq1  GCCTCTTTCAAACTGATGGCCGACTAGGCCATCTTCTGATACATATGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTTTCAAACTGATGGCCGACTAGGCCATCTTCTGATACATATGCAG  400

seq1  CTAGAGACACGAGGTCCGGGGGGTACTGGTTAGTTCATATTGTTGTTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGACACGAGGTCCGGGGGGTACTGGTTAGTTCATATTGTTGTTCCA  450

seq1  CCTATAGGGTTGCAGATCCCCCTAGTTCCTTGGGTACTTTCTCTAGCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATAGGGTTGCAGATCCCCCTAGTTCCTTGGGTACTTTCTCTAGCTCC  500

seq1  TCCATTGGGGGCCCTGTGATCCATTCAATAGCTGATTGTGAGCACCCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTGGGGGCCCTGTGATCCATTCAATAGCTGATTGTGAGCACCCTCC  550

seq1  TCTGTGTTTGCTAGGCCCCGGCATAGTCTCACAAGAGACAGCTATATCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTTTGCTAGGCCCCGGCATAGTCTCACAAGAGACAGCTATATCAG  600

seq1  GGTCCTTTCAGCAAAATCTTGCTTGTGTATGCAATGGTGTAAGTGTTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTTTCAGCAAAATCTTGCTTGTGTATGCAATGGTGTAAGTGTTTGG  650

seq1  AAGGTGATTATGCG  664
      ||||||||||||||
seq2  AAGGTGATTATGCG  664

seq1: chr8_88460253_88461324
seq2: B6Ng01-345P05.g_67_1128 (reverse)

seq1  GCTAGATCTTCCTAAGCTGCAAAGGAGAAAAGGGAGTGGCACTGACTCTC  50
      |||||||| ||   |||||||||| |||||| ||||||||||||||||| 
seq2  GCTAGATCCTC--TAGCTGCAAAGAAGAAAATGGAGTGGCACTGACTCT-  47

seq1  CAGGTCTGCTGTGATGCTGGTAGTGATTGGCTTGGTTTTTGTCATGGCGT  100
      || ||||||||||||||| ||||||| |||||  | |||||||||| || 
seq2  CAAGTCTGCTGTGATGCT-GTAGTGA-TGGCT--GGTTTTGTCATGACG-  92

seq1  TGCTTCCTTTGAAGTACCTGAGGCCATGCCTACTATTTAACAGCGAACCC  150
      ||||||| |||||||| |||||||||||||||||||||||||||||||||
seq2  TGCTTCC-TTGAAGTA-CTGAGGCCATGCCTACTATTTAACAGCGAACCC  140

seq1  CTCTTTTCTATGCACACTCCATAGAGCACACTCACTCACAGTCCACTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTCTATGCACACTCCATAGAGCACACTCACTCACAGTCCACTGTG  190

seq1  ACTGCTGCCTTGCTGCTTGTTGAAGCTTTACTCTTCTGGAATCTGACCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGCCTTGCTGCTTGTTGAAGCTTTACTCTTCTGGAATCTGACCTG  240

seq1  CCTAAGCAGGCATTTCAATCTTAGGTATAAATGTTCTGCCAGTATGATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGCAGGCATTTCAATCTTAGGTATAAATGTTCTGCCAGTATGATTT  290

seq1  CTTAGCGTGTTTTTGAATCTTACGTGTACATTGGGCTCAGAGGAATTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCGTGTTTTTGAATCTTACGTGTACATTGGGCTCAGAGGAATTCTG  340

seq1  AAAGCAGTCACTCATGACACATAAGCACCTTCCTGACCTAGTATAAAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGTCACTCATGACACATAAGCACCTTCCTGACCTAGTATAAAAGG  390

seq1  CGCTGTTTAGAGTTTAGTTATCCCCTTAGAGTTTTAATGCTCAGAAAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGTTTAGAGTTTAGTTATCCCCTTAGAGTTTTAATGCTCAGAAAATT  440

seq1  CTAAAGTGCGGCCAAGAGCGTAGCTGTTTTTAACATAACTCTGTGCTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGTGCGGCCAAGAGCGTAGCTGTTTTTAACATAACTCTGTGCTGAA  490

seq1  TGTTACTAAATGGATATTGGTCATTTATTAGTTCAGGTAGAAATGGAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACTAAATGGATATTGGTCATTTATTAGTTCAGGTAGAAATGGAAAC  540

seq1  AAAATTGGTCATTTCTTGTAGCCACACAGAAGTAATGGGAATAGGTATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGGTCATTTCTTGTAGCCACACAGAAGTAATGGGAATAGGTATGG  590

seq1  AAAAAGAAAGGACAGTCACAAATGCCTCTTCAGATGAGGCACAACCTACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAAGGACAGTCACAAATGCCTCTTCAGATGAGGCACAACCTACA  640

seq1  ACCAACCAACCAGTCAACCAGTTGACATACCAAAGCATACATGAAAAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACCAACCAGTCAACCAGTTGACATACCAAAGCATACATGAAAAAGT  690

seq1  AAAAAAAAAAAAAAGGCCGGGCGTGGTGGCACTCGGGAGTCAGAGGCAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAGGCCGGGCGTGGTGGCACTCGGGAGTCAGAGGCAGG  740

seq1  CAAATTTCTGAGTTCAAGGCCAGTCTAGCCTACAAAGTGAGTTCCAGGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTCTGAGTTCAAGGCCAGTCTAGCCTACAAAGTGAGTTCCAGGAC  790

seq1  AGCTAGGGCTATACAGAGAAACCCTGTCTCGAAAAAACAAAAAACAAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGGGCTATACAGAGAAACCCTGTCTCGAAAAAACAAAAAACAAAAA  840

seq1  CAAAACCCAAAAAGCAAAAAACAAAACACCAAACAAACCCAGAAACTATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACCCAAAAAGCAAAAAACAAAACACCAAACAAACCCAGAAACTATC  890

seq1  AGGTAAGCAATACTCCTTCCTGGTTAGGATCAGTGTTATTTCTTACTCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAGCAATACTCCTTCCTGGTTAGGATCAGTGTTATTTCTTACTCAG  940

seq1  AGCTGTCTTTTTAGCAGTTGTGTGGTAAAGGAAGGAGTCCAATGTCATAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTCTTTTTAGCAGTTGTGTGGTAAAGGAAGGAGTCCAATGTCATAA  990

seq1  ATTCACACACGTTAATGGGTGTGCTCTCCTTGCTGAGATGTCTGTGTGGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACACACGTTAATGGGTGTGCTCTCCTTGCTGAGATGTCTGTGTGGG  1040

seq1  ACTCCACTCTCCGTAAGAATTC  1072
      ||||||||||||||||||||||
seq2  ACTCCACTCTCCGTAAGAATTC  1062