BAC Information

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BAC

Clone NameB6Ng01-346D18
Chromosome8 (Build37)
Map Location 5,172,871 - 5,275,386
singlet/doubletdoublet
Overlap genenone
Upstream geneB130050I23Rik, BC068157, Lrrc8e, Map2k7, LOC100039590, Snapc2, Ctxn1, Timm44, Elavl1, Ccl25, LOC664977, Ppia-ps8_36.1, Lass4, Vmn2r-ps89, EG633533, BC003267, LOC665021, EG623133, EG665044, EG623223, LOC100040234, Shcbp1, EG622568, LOC669393, EG631359, LOC100039687, LOC436026, Slc10a2, LOC434275
Downstream geneLOC623409, LOC669429, LOC100040360
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346D18.bB6Ng01-346D18.g
ACCGA128188GA128189
length1,1251,133
definitionB6Ng01-346D18.b B6Ng01-346D18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,172,871 - 5,173,542)(5,274,253 - 5,275,386)
sequence
gaattcccacacaaccctggctgttgccaagacaattgttgtttggctgt
tctccacaaactgaaagccagttcttaatggtgaagacattacttacaca
gcatattgagcatggagaagtggagttggttcccacatagacgctttagt
tctacattctagtgtcttttgtacaagaaagtactctgcagtcttaaaag
agaaacataaacaccaacccagctaaacctttgatctacaatctgcccta
cctgcaaaatatgctagggcaatggtggtacaaagcttttggtagtaacc
aagcaatgtctgatttgacttaagacctactccacaaaatggagactata
tctcacatttcttgggtgatcaagaaccagagaccagatagcccagagaa
ctagtgtaaaacttaatactactggtttttaaaaaagtaaaatcagatga
ctcctaatgatattccactataccaggatcagaagcttattcagccatct
acagagaaatctccttctgcagtaaatgggaacaaacacagaaccatagc
caaacattatgctgagaaaaagacattaaaacacatacctctaaatagta
tgtctccaccaaatccctctcttcagagttctggaaaccctggagaagag
gagctggaaagagccagagaggatggaggacaccagaaaaacaagtctgt
ctaaatcaactgagcagagctcatataaattcacagagactgaggcagca
agcatagggcctgcattggtcttcgccaagtcttccacatatatatgaca
gttttcagtttagtattttaatgagactcctgaatgcgtgaatgactagg
tctctgattattgtgccttctcctggggctttttttttttctttctgttg
gttggacttgtccaattttaatatgatggtgtttattttattttccatgt
tttacttgttaaagaaccccccccacacacacacagtgacaggaaggcat
agcaagagatatagggatgggaaaagagaatatggagaaatatgatagtg
atattttttgtattcagtatgaatctcaaaaagagaacattgaaagtcaa
aaaaagaatatctaaaatcttgttt
gaattccagcatttatctggctgtcgctcagttcactttttattggtaca
atgccacctgtgttcagagtggggcttcagttgacctggatacattccca
caaacttacccagaggtgattctaatccagccatctgacaatggattttc
tgtcaaaataattcatcacaaaatggtctcagtatagatctttcccacaa
caggtttcagaaagaccctataaaatataaaaggtcaggcaggttcctgg
atgctatctctccatgctccaaagcttgaccactccttgtactgagtgcc
tctgtgcactacagtaactcattagcaactctgtctctgaacactgaatt
gtacttgtccatctcttcagacaataagatttcttagaacatagtatgtt
gaggattagaaaataaacaccagcattttttcatacactagaaaattatg
gctgttactgctatcccatgtggacattagtttctgatgatctcatttcc
taaataccatttgatttattgtgtaatattaaaatagaattttctaccta
tagcatcagttatgcagattggcttttctaggggaaaataaggagaaatg
atcagaattcctgaatttttaatttaattcagacagttcccacggaagta
taaagtattatttgttagctgaggttgatgaattctccacagattctcag
taattattctcagatatctattatgaggattcagaacactgccatgatgt
gctgactcagtcatttgtgtgaagcacaccctcccttttccttctctgag
ctctgaaatttcatcatgaaatatcttagctgattaatgcaccaaaatca
tattcaaattatctaaccactactatgttatattaaggcataaataaaaa
taatagtggcataatttctttgccaccttgtaggatattagtaacaacta
caagaaaatagggatatttcctgtcttgatatccgtatcttttttggctt
cagtgaaatacaaaaaccctgcttcatggaaccgccacctctgtgattct
gctgtttggcctctttatttgaaggcgttataagcaccacagaatgcttt
tgtttcttgctgtgcagtttcttcctggtatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_5172871_5173542
seq2: B6Ng01-346D18.b_504_1168

seq1  TATTCCACTATACCAGGATCAGAAGCTTATTCAGCCATCTACAGAGAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCACTATACCAGGATCAGAAGCTTATTCAGCCATCTACAGAGAAAT  50

seq1  CTCCTTCTGCAGTAAATGGGAACAAACACAGAACCATAGCCAAACATTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCTGCAGTAAATGGGAACAAACACAGAACCATAGCCAAACATTAT  100

seq1  GCTGAGAAAAAGACATTAAAACACATACCTCTAAATAGTATGTCTCCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGAAAAAGACATTAAAACACATACCTCTAAATAGTATGTCTCCACC  150

seq1  AAATCCCTCTCTTCAGAGTTCTGGAAACCCTGGAGAAGAGGAGCTGGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCCTCTCTTCAGAGTTCTGGAAACCCTGGAGAAGAGGAGCTGGAAA  200

seq1  GAGCCAGAGAGGATGGAGGACACCAGAAAAACAAGTCTGTCTAAATCAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGAGAGGATGGAGGACACCAGAAAAACAAGTCTGTCTAAATCAAC  250

seq1  TGAGCAGAGCTCATATAAATTCACAGAGACTGAGGCAGCAAGCATAGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGAGCTCATATAAATTCACAGAGACTGAGGCAGCAAGCATAGGGC  300

seq1  CTGCATTGGTCTTCGCCAAGTCTTCCACATATATATGACAGTTTTCAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATTGGTCTTCGCCAAGTCTTCCACATATATATGACAGTTTTCAGTT  350

seq1  TAGTATTTTAATGAGACTCCTGAATGCGTGAATGACTAGGTCTCTGATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATTTTAATGAGACTCCTGAATGCGTGAATGACTAGGTCTCTGATTA  400

seq1  TTGTGCCTTCTCCTGGGGC-TTTTTTTTTTCTTTCTGTTGGTTGGACTTG  449
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTGTGCCTTCTCCTGGGGCTTTTTTTTTTTCTTTCTGTTGGTTGGACTTG  450

seq1  TCCAATTTTAATATGATGGTGTTTATTTTATTTTCCATGTTTTACTTTGT  499
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TCCAATTTTAATATGATGGTGTTTATTTTATTTTCCATGTTTTAC-TTGT  499

seq1  TAAAGAACCCCCCCCACACACACACAGTGACAGGAAGGGCATAGCAAGAG  549
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TAAAGAACCCCCCCCACACACACACAGTGACAGGAA-GGCATAGCAAGAG  548

seq1  AATATAGGGAATGGGAAAAGAGAATATGGAAGAAATATGATAGTGATA-T  598
       |||||||| ||||||||||||||||||| |||||||||||||||||| |
seq2  -ATATAGGG-ATGGGAAAAGAGAATATGG-AGAAATATGATAGTGATATT  595

seq1  TTTTGTATTCAGGTATGAAATTCTCAAAAAGAGAACATTTGAAAGTCAAA  648
      ||||||||||| |||||||  |||||||||||||||| ||||||||||||
seq2  TTTTGTATTCA-GTATGAA--TCTCAAAAAGAGAACA-TTGAAAGTCAAA  641

seq1  AAAAGAATATCTAAAATCTTGTTT  672
      ||||||||||||||||||||||||
seq2  AAAAGAATATCTAAAATCTTGTTT  665

seq1: chr8_5274253_5275386
seq2: B6Ng01-346D18.g_66_1198 (reverse)

seq1  TCATACCAGG-AGAAACTGCAACAAGCAAG-AACAAAAGCATTCTGT-GT  47
      |||||||||| ||||||||||   |||||| |||||||||||||||| ||
seq2  TCATACCAGGAAGAAACTGCA--CAGCAAGAAACAAAAGCATTCTGTGGT  48

seq1  GCTTTATAAACGCCTTCAAATAAAGAGGCCAAACAGCAGAATCACAGAGG  97
      || |||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GC-TTAT-AACGCCTTCAAATAAAGAGGCCAAACAGCAGAATCACAGAGG  96

seq1  T-GCGGTTCCATGAAGGCAGGGTTTTTGTATTTCACTGAAGCC-AAAAAG  145
      | ||||||||||||| ||||||||||||||||||||||||||| ||||||
seq2  TGGCGGTTCCATGAA-GCAGGGTTTTTGTATTTCACTGAAGCCAAAAAAG  145

seq1  ATAACGGAATATCAAGACA-GAAATATCCCTATTTTCTTGTAGTTGTTAC  194
      || |||| ||||||||||| ||||||||||||||||||||||||||||||
seq2  AT-ACGG-ATATCAAGACAGGAAATATCCCTATTTTCTTGTAGTTGTTAC  193

seq1  TAATATCCTACAAGGTGGCAAAGAAATTATGCCACTATTATTTTTATTTA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATCCTACAAGGTGGCAAAGAAATTATGCCACTATTATTTTTATTTA  243

seq1  TGCCTTAATATAACATAGTAGTGGTTAGATAATTTGAATATGATTTTGGT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTAATATAACATAGTAGTGGTTAGATAATTTGAATATGATTTTGGT  293

seq1  GCATTAATCAGCTAAGATATTTCATGATGAAATTTCAGAGCTCAGAGAAG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTAATCAGCTAAGATATTTCATGATGAAATTTCAGAGCTCAGAGAAG  343

seq1  GAAAAGGGAGGGTGTGCTTCACACAAATGACTGAGTCAGCACATCATGGC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGGAGGGTGTGCTTCACACAAATGACTGAGTCAGCACATCATGGC  393

seq1  AGTGTTCTGAATCCTCATAATAGATATCTGAGAATAATTACTGAGAATCT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTCTGAATCCTCATAATAGATATCTGAGAATAATTACTGAGAATCT  443

seq1  GTGGAGAATTCATCAACCTCAGCTAACAAATAATACTTTATACTTCCGTG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGAATTCATCAACCTCAGCTAACAAATAATACTTTATACTTCCGTG  493

seq1  GGAACTGTCTGAATTAAATTAAAAATTCAGGAATTCTGATCATTTCTCCT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTGTCTGAATTAAATTAAAAATTCAGGAATTCTGATCATTTCTCCT  543

seq1  TATTTTCCCCTAGAAAAGCCAATCTGCATAACTGATGCTATAGGTAGAAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCCCCTAGAAAAGCCAATCTGCATAACTGATGCTATAGGTAGAAA  593

seq1  ATTCTATTTTAATATTACACAATAAATCAAATGGTATTTAGGAAATGAGA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTATTTTAATATTACACAATAAATCAAATGGTATTTAGGAAATGAGA  643

seq1  TCATCAGAAACTAATGTCCACATGGGATAGCAGTAACAGCCATAATTTTC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAGAAACTAATGTCCACATGGGATAGCAGTAACAGCCATAATTTTC  693

seq1  TAGTGTATGAAAAAATGCTGGTGTTTATTTTCTAATCCTCAACATACTAT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTATGAAAAAATGCTGGTGTTTATTTTCTAATCCTCAACATACTAT  743

seq1  GTTCTAAGAAATCTTATTGTCTGAAGAGATGGACAAGTACAATTCAGTGT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAAGAAATCTTATTGTCTGAAGAGATGGACAAGTACAATTCAGTGT  793

seq1  TCAGAGACAGAGTTGCTAATGAGTTACTGTAGTGCACAGAGGCACTCAGT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGACAGAGTTGCTAATGAGTTACTGTAGTGCACAGAGGCACTCAGT  843

seq1  ACAAGGAGTGGTCAAGCTTTGGAGCATGGAGAGATAGCATCCAGGAACCT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGAGTGGTCAAGCTTTGGAGCATGGAGAGATAGCATCCAGGAACCT  893

seq1  GCCTGACCTTTTATATTTTATAGGGTCTTTCTGAAACCTGTTGTGGGAAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGACCTTTTATATTTTATAGGGTCTTTCTGAAACCTGTTGTGGGAAA  943

seq1  GATCTATACTGAGACCATTTTGTGATGAATTATTTTGACAGAAAATCCAT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTATACTGAGACCATTTTGTGATGAATTATTTTGACAGAAAATCCAT  993

seq1  TGTCAGATGGCTGGATTAGAATCACCTCTGGGTAAGTTTGTGGGAATGTA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGATGGCTGGATTAGAATCACCTCTGGGTAAGTTTGTGGGAATGTA  1043

seq1  TCCAGGTCAACTGAAGCCCCACTCTGAACACAGGTGGCATTGTACCAATA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGTCAACTGAAGCCCCACTCTGAACACAGGTGGCATTGTACCAATA  1093

seq1  AAAAGTGAACTGAGCGACAGCCAGATAAATGCTGGAATTC  1134
      ||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGAACTGAGCGACAGCCAGATAAATGCTGGAATTC  1133