BAC Information

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BAC

Clone NameB6Ng01-346L09
Chromosome8 (Build37)9 (Build37)
Map Location 5,668,711 - 5,669,87946,354,126 - 46,354,440
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG665044, EG623223, LOC100040234, Shcbp1, EG622568, LOC669393, EG631359, LOC100039687, LOC436026, Slc10a2, LOC434275, LOC623409, LOC669429
Downstream geneLOC100040360
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346L09.bB6Ng01-346L09.g
ACCGA128532GA128533
length1,155491
definitionB6Ng01-346L09.b B6Ng01-346L09.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(5,668,711 - 5,669,879)(46,354,126 - 46,354,440)
sequence
gaattcacattctccatgtacatttaagttttcaagcataatgaatgata
ctatttcttacaacagtgattgacagcacctgagctgaaaattcattatc
atagtgtcatctagaagcttgtttatactattgatatacatagattagtc
atcacacggcctatttccatggcatcagtgactggagcatgtgtattaca
aaactaagaacattaattgttccaaatggtcatgatcacagttctttatc
tagtgacaagtattgacctaaaattgagggtcaccataactgatgaatcc
cagataactagggcttttgaacttttatctagcagctatgtctgatcact
tgataatttaataaaatatctatcatctataaatttcaccctcagaacaa
cgaaatcaatgtataaataaaaaaatctcaaaaaatattgtaagtttttg
aagcttgcttttttatgttaggcagtatacataattacttttggcttcct
gctgccacatgtggattacagactgtagcctggatatgtctgctctgtga
gatgagctttgttttgtatttacccacaaacaaccttggatgggggatgg
acttaaattgttttctaattccttgtcagtcccaaagattttttttcttt
gtacatttgcaatagtaggagggagatttatgataaactagaagtgtatc
aagataaaataatagcctagatttttttgtagagaccgatgatgttttca
aatattttattattattgctaatgtattattattattatcattaaaatgg
actgttttagctccatgtgtctattcacaatgaaagttcttctttagcag
tggactttttttttacaaaaggcacttcagtttctgtctcctgagtatac
acaaagaatgttctaacgtacagtgattattgattgcttaggaaatcaga
actagttgtagcttagatttttcaaacatactttaataaggtactcaaac
acttcaacttccctcctagcccactgttgaaagtagggtgcaagatgtta
aatagacaagaagattgtgactgttcttggggcagtcccacttctctgtt
gtcagatacagccagttcagtcagcaggtcgaaatcaaaccaagtcagca
ttggt

cctgtctttgttgagtctttgtgtggtttaggtatcagggtggctgtggt
ttcatataatgagttttccagtgctccttctgttctattttgtgtaatag
tttgactacttttagttgaaagtctattttattagtattagaatggccac
ctcagcttgtttcttgggtctgtttgcttggctcacctttttcaaacctt
ttattctgagtagtgttgctgaagtgtgtttcatccattcagtagatata
tggatcctgattatgaatccacactgttatggatataacccaatgccaat
ttattgacaaactgaatccattgatattaagagatattactgaccaatga
ttattagttctttttttttaatgttagtatgtgtgcctgtatttgtctgt
ttgtgtgtgtgtgtgtgtgagagagagagagagagagtctgtgtgtgagt
ctgtgtttgtgtgtctgtgttgtatgtatgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_5668711_5669879
seq2: B6Ng01-346L09.b_48_1202

seq1  GAATTCACATTCTCCATGTACATTTAAGTTTTCAAGCATAATGAATGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATTCTCCATGTACATTTAAGTTTTCAAGCATAATGAATGATA  50

seq1  CTATTTCTTACAACAGTGATTGACAGCACCTGAGCTGAAAATTCATTATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTCTTACAACAGTGATTGACAGCACCTGAGCTGAAAATTCATTATC  100

seq1  ATAGTGTCATCTAGAAGCTTGTTTATACTATTGATATACATAGATTAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGTCATCTAGAAGCTTGTTTATACTATTGATATACATAGATTAGTC  150

seq1  ATCACACGGCCTATTTCCATGGCATCAGTGACTGGAGCATGTGTATTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACACGGCCTATTTCCATGGCATCAGTGACTGGAGCATGTGTATTACA  200

seq1  AAACTAAGAACATTAATTGTTCCAAATGGTCATGATCACAGTTCTTTATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAAGAACATTAATTGTTCCAAATGGTCATGATCACAGTTCTTTATC  250

seq1  TAGTGACAAGTATTGACCTAAAATTGAGGGTCACCATAACTGATGAATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGACAAGTATTGACCTAAAATTGAGGGTCACCATAACTGATGAATCC  300

seq1  CAGATAACTAGGGCTTTTGAACTTTTATCTAGCAGCTATGTCTGATCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAACTAGGGCTTTTGAACTTTTATCTAGCAGCTATGTCTGATCACT  350

seq1  TGATAATTTAATAAAATATCTATCATCTATAAATTTCACCCTCAGAACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAATTTAATAAAATATCTATCATCTATAAATTTCACCCTCAGAACAA  400

seq1  CGAAATCAATGTATAAATAAAAAAATCTCAAAAAATATTGTAAGTTTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAATCAATGTATAAATAAAAAAATCTCAAAAAATATTGTAAGTTTTTG  450

seq1  AAGCTTGCTTTTTTATGTTAGGCAGTATACATAATTACTTTTGGCTTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTGCTTTTTTATGTTAGGCAGTATACATAATTACTTTTGGCTTCCT  500

seq1  GCTGCCACATGTGGATTACAGACTGTAGCCTGGATATGTCTGCTCTGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCACATGTGGATTACAGACTGTAGCCTGGATATGTCTGCTCTGTGA  550

seq1  GATGAGCTTTGTTTTGTATTTACCCACAAACAACCTTGGATGGGGGATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGCTTTGTTTTGTATTTACCCACAAACAACCTTGGATGGGGGATGG  600

seq1  ACTTAAATTGTTTTCTAATTCCTTGTCAGTCCCAAAGATTTTTTTTCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAATTGTTTTCTAATTCCTTGTCAGTCCCAAAGATTTTTTTTCTTT  650

seq1  GTACATTTGCAATAGTAGGAGGGAGATTTATGATAAACTAGAAGTGTATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATTTGCAATAGTAGGAGGGAGATTTATGATAAACTAGAAGTGTATC  700

seq1  AAGATAAAATAATAGCCTAGATTTTTTTGTAGAGACCGATGATGTTTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAAAATAATAGCCTAGATTTTTTTGTAGAGACCGATGATGTTTTCA  750

seq1  AATATTTTATTATTATTGCTAATGTATTATTATTATTATCATTAAAATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTATTATTATTGCTAATGTATTATTATTATTATCATTAAAATGG  800

seq1  ACTGTTTTAGCTCCATGTGTCTATTCACAATGAAAGTTCTTCTTTAGCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTTAGCTCCATGTGTCTATTCACAATGAAAGTTCTTCTTTAGCAG  850

seq1  TGGACTTTTTTTTTACAAAAGGCACTTCAGTTTCTGTCTCCTGAGTATAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTTTTTTTTTACAAAAGGCACTTCAGTTTCTGTCTCCTGAGTATAC  900

seq1  ACAAAGAATGTTCTAACGTACAGTGATTATTGATTGCTTAGGAAATCAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAATGTTCTAACGTACAGTGATTATTGATTGCTTAGGAAATCAGA  950

seq1  ACTAGTTGTAGGCTTAGATTTTTCAAAACATACTTTAATAAGGGTACTCA  1000
      |||||||||| ||||||||||||| |||||||||||||||| ||||||||
seq2  ACTAGTTGTA-GCTTAGATTTTTC-AAACATACTTTAATAA-GGTACTCA  997

seq1  AACACTTCAACTTCCCTCCTAGCCCACTGTTGAAAGGTAGGGGTGCAAAG  1050
      ||||||||||||||||||||||||||||||||||| ||| |||||| |||
seq2  AACACTTCAACTTCCCTCCTAGCCCACTGTTGAAA-GTA-GGGTGC-AAG  1044

seq1  ATGTTAAATAGGACAAG-AGATTGTGGACCTGTTCTTTGGGGCAGTCCCA  1099
      |||||||||| |||||| ||||||||   |||||| ||||||||||||||
seq2  ATGTTAAATA-GACAAGAAGATTGTG--ACTGTTC-TTGGGGCAGTCCCA  1090

seq1  C-TCTCTGTTGTCAGGATACCAGCAGTCAAGTTCAGCAGTGTCAGAATAC  1148
      | |||||||||||| |||||   ||||  || ||||||| |||  |||  
seq2  CTTCTCTGTTGTCA-GATACAGCCAGTTCAG-TCAGCAG-GTCGAAAT--  1135

seq1  CAAACACAAGTCAGCAATGGT  1169
      ||||| |||||||||| ||||
seq2  CAAAC-CAAGTCAGCATTGGT  1155


seq1: chr9_46354126_46354440
seq2: B6Ng01-346L09.g_472_566

seq1  CTGTATGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGA  50
                                                        
seq2  --------------------------------------------------  0

seq1  GAGAGAGAGAGAGAAGAAGAAGAAGAGGAGGAGGAGGAAGAGGAGGAAGA  100
                                                        
seq2  --------------------------------------------------  0

seq1  GGGGGAGGAGGAAAAGATTGTATGTCCCCCCCTGGAAACCTTAATTAAAC  150
                                                        
seq2  --------------------------------------------------  0

seq1  CATTGGAGGTATACTTACCCCACTGAGATTGAGTTTATTAGGAACTGCAA  200
                                                        
seq2  --------------------------------------------------  0

seq1  GTGCCACATGTCTTTAAAGTTCCATTAAGGCTACTAGCTCTGTGTGTGTG  250
                                             |||| ||||||
seq2  ---------------------------------------CTGTTTGTGTG  11

seq1  TGTGTGTGTGT------------------GTGTGTGTGTGTGTGTGTGTG  282
      |||||||||||                  || |||||||| || ||||| 
seq2  TGTGTGTGTGTGAGAGAGAGAGAGAGAGAGTCTGTGTGTGAGTCTGTGTT  61

seq1  TGTGTGTGTGTG-TATGTGTATGTGTGTGTGTGT  315
      ||||||| |||| | | |||||||||||||||||
seq2  TGTGTGTCTGTGTTGTATGTATGTGTGTGTGTGT  95


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