BAC Information

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BAC

Clone NameB6Ng01-347I19
Chromosome8 (Build37)
Map Location 89,441,369 - 89,590,047
singlet/doubletdoublet
Overlap geneEG625298
Upstream genePhkb, LOC671665, LOC100040165, Abcc12, Lonp2, Siah1a, ENSMUSG00000074178, BC004022, LOC666960
Downstream geneEG330819, Cbln1, LOC100040294, 4933402J07Rik, Zfp423, LOC100040328
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-347I19.bB6Ng01-347I19.g
ACCGA129119GA129120
length1,2191,003
definitionB6Ng01-347I19.b B6Ng01-347I19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,588,794 - 89,590,047)(89,441,369 - 89,442,368)
sequence
gaattctcagcttttcctatctcgagcaaccgcagagagccaatggcgtt
cacacagttactgtagcagccgccctgtggccagacagctgcgcagtgtg
ggcttctccccacgccacggtggaggaagggtgccaagactattttcacc
tttgttatttgagaaaacatgataggtcaaataaaaggcaatcctccctc
tgatagagtccctgggaaagaaggcagagggccccgtgccgccgacagga
ctgtaccaaaaatattttaaatctctggtcccttagggctccaggtagga
ccactccctttaaacttcatcttccttcccagccttcctcccggtcttca
gaccgatgaaggctaaggatgagaggatcctgagcagcagctggtcctgg
gagtttgtccccttttagagcaaggggtcctgtcctcccagcctgcctct
ctccctacttctcttcgggccgcgattgggtgccgagagttcatgactca
gccttccgaggccttctcatctcagctctggtacatctcattacccaatc
ttaggtgtacttcgaggctctggggagggaaatctgctgcagccagccct
gggaatgcttcggctgtcaagcgggctcttaatgagttggtgatggagag
aaaaaatgccctatagttttaggctcgggtttaatcctggcagcctaatt
gcaccgggctcttctctgatgccctccctggccactttcagctgtccggt
gagggggtgactggctggccacacaagcagggcacacagggcaaggccaa
ttactggtcacattgaatccagaactcagcacagagaaaccgatgtcatc
tggctaagtgtccgcagatgctggccagtaacccagaatcccactctgaa
ggttccccagtcagacctgtctcagaaatagtcaatgcattcaggggggg
gaggttctacaattttaccaaattatatatcccaggacatttaaaaagaa
atctacttcacatttcacatcacaaacgtagatttctatttctgctacag
agccccgtacacagtagatctgactggtatcactaattagctagctttgg
aacacctctatgaatacgggcatgtgctctagtagcgcgtcagacttgac
ccctatggctcgagctatgctggaacgattccagacgtcaatcgctggaa
cttgccaagacagactctg

gaattctttggcatctcatctaaatcactggcactagtgaccattactat
tggggtggtagattgcaaggaaacatatcttactgtctcatgttatttat
gttgaaagttgcctgcctggacctagctttttagttaagtctttccgtga
tgcctgtgttgagtgagcatttgcttcagtgtttgctatttcctctgctt
ggtactggtattggttcagctcagtgttgcttgattctagtagtagacac
tcagtgttagctcctggatggagaaactgaaggtatattggcttggctac
agtgtgggcgtggtctttggtctcataaaccagagtctgtacaacatgtt
gggagtttgtactagaggtggtagtttcatgtgttctctgatctcatgat
cctgagttgagcagtgttataggggtgtgtcccagggccatgacccctaa
cttcataagccagggtgctcatgtgtactgtgcatgtatggaatatcctc
tggcttctccagttggggcaggagtgtgcactggggtgtgggaggagatc
aaacacctctggcattaccggccagttgaggacaggatgcaagaagtgca
aagcaggggcctctaaaatgccttgctgggttgagcctgggatacatatg
agtcttgtacccttttcagccatgatgagtgttcaggacagtgtaagtgt
tagcaggagaattgggagagcagaaggtcttgagacttctagtctgacca
gctggagctggtataaagtagcggaaacacagagcagcagacattgtagt
ctccacagagccagagcccttttctgctgggataatcacacagtgtgtgc
gagggtgtgaaggttccagggtaagcaggatagtgggacatggctctggt
aggggttcacagagagtggaaagatgagtgagagatctcaaggtctctaa
cttgtctgggagggggtgaggtgcaaggacagcatgaatatcggaaaggg
aga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_89588794_89590047
seq2: B6Ng01-347I19.b_46_1264 (reverse)

seq1  CAGAGTCTGTCTTGTGCCAGAGTTCTCCAGGCCCGTATTAGAAAGCCGTC  50
      |||||||||||||| || ||     |||||   || |||     | ||||
seq2  CAGAGTCTGTCTTG-GCAAG----TTCCAG---CG-ATT-----GACGTC  36

seq1  ACTGGGAGTCGTGTCAAGGGCATAAGCTCCGAGAGCAATAGGGTGCAGTG  100
          ||| ||||  ||   |||| |||||   |||| ||||||  ||   
seq2  ---TGGAATCGTTCCA---GCAT-AGCTC---GAGCCATAGGGGTCAAGT  76

seq1  CTGACTGCCGCTAACTAGAGCACATGCCCGGTATTCATAGAGTTGTTTCA  150
      |||||   |||| |||||||||||||||| |||||||||||| |||| ||
seq2  CTGAC--GCGCT-ACTAGAGCACATGCCC-GTATTCATAGAGGTGTTCCA  122

seq1  AAACTCTAGCTAATTAGTGATACAGGCCACGAATCTACTGTGTACGGGGC  200
      ||   ||||||||||||||||||  | ||   ||||||||||||||||||
seq2  AA--GCTAGCTAATTAGTGATACCAGTCA--GATCTACTGTGTACGGGGC  168

seq1  TTCTGTAGCAGAAATTAGAAATCTACGTTTTGTGATGTGAAATGTGAAGT  250
       ||||||||||||| |||||||||||| ||||||||||||||||||||||
seq2  -TCTGTAGCAGAAA-TAGAAATCTACG-TTTGTGATGTGAAATGTGAAGT  215

seq1  AGATTTCTTTTTAAATGTCCTGGGATTATATAATTTGGTAAAATTGTAGA  300
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGATTTCTTTTTAAATGTCCTGGGA-TATATAATTTGGTAAAATTGTAGA  264

seq1  ACCTCCCCCCCCTGAATGCATTGACTATTTCTGAGACAGGTCTGACTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCCCCCCCTGAATGCATTGACTATTTCTGAGACAGGTCTGACTGGG  314

seq1  GAACCTTCAGAGTGGGATTCTGGGTTACTGGCCAGCATCTGCGGACACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTTCAGAGTGGGATTCTGGGTTACTGGCCAGCATCTGCGGACACTT  364

seq1  AGCCAGATGACATCGGTTTCTCTGTGCTGAGTTCTGGATTCAATGTGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGATGACATCGGTTTCTCTGTGCTGAGTTCTGGATTCAATGTGACC  414

seq1  AGTAATTGGCCTT-CCCTGTGTGCCCTGCTTGTGTGGCCAGCCAGTCACC  499
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGTAATTGGCCTTGCCCTGTGTGCCCTGCTTGTGTGGCCAGCCAGTCACC  464

seq1  CCCTCACCGGACAGCTGAAAGTGGCCAGGGAGGGCATCAGAGAAGAGCCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCACCGGACAGCTGAAAGTGGCCAGGGAGGGCATCAGAGAAGAGCCC  514

seq1  GGTGCAATTAGGCTGCCAGGATTAAACCCGAGCCTAAAACTATAGGGCAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCAATTAGGCTGCCAGGATTAAACCCGAGCCTAAAACTATAGGGCAT  564

seq1  TTTTTCTCTCCATCACCAACTCATTAAGAGCCCGCTTGACAGCCGAAGCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTCTCCATCACCAACTCATTAAGAGCCCGCTTGACAGCCGAAGCA  614

seq1  TTCCCAGGGCTGGCTGCAGCAGATTTCCCTCCCCAGAGCCTCGAAGTACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGGGCTGGCTGCAGCAGATTTCCCTCCCCAGAGCCTCGAAGTACA  664

seq1  CCTAAGATTGGGTAATGAGATGTACCAGAGCTGAGATGAGAAGGCCTCGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGATTGGGTAATGAGATGTACCAGAGCTGAGATGAGAAGGCCTCGG  714

seq1  AAGGCTGAGTCATGAACTCTCGGCACCCAATCGCGGCCCGAAGAGAAGTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTGAGTCATGAACTCTCGGCACCCAATCGCGGCCCGAAGAGAAGTA  764

seq1  GGGAGAGAGGCAGGCTGGGAGGACAGGACCCCTTGCTCTAAAAGGGGACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGAGGCAGGCTGGGAGGACAGGACCCCTTGCTCTAAAAGGGGACA  814

seq1  AACTCCCAGGACCAGCTGCTGCTCAGGATCCTCTCATCCTTAGCCTTCAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCCAGGACCAGCTGCTGCTCAGGATCCTCTCATCCTTAGCCTTCAT  864

seq1  CGGTCTGAAGACCGGGAGGAAGGCTGGGAAGGAAGATGAAGTTTAAAGGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTCTGAAGACCGGGAGGAAGGCTGGGAAGGAAGATGAAGTTTAAAGGG  914

seq1  AGTGGTCCTACCTGGAGCCCTAAGGGACCAGAGATTTAAAATATTTTTGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTCCTACCTGGAGCCCTAAGGGACCAGAGATTTAAAATATTTTTGG  964

seq1  TACAGTCCTGTCGGCGGCACGGGGCCCTCTGCCTTCTTTCCCAGGGACTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTCCTGTCGGCGGCACGGGGCCCTCTGCCTTCTTTCCCAGGGACTC  1014

seq1  TATCAGAGGGAGGATTGCCTTTTATTTGACCTATCATGTTTTCTCAAATA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGAGGGAGGATTGCCTTTTATTTGACCTATCATGTTTTCTCAAATA  1064

seq1  ACAAAGGTGAAAATAGTCTTGGCACCCTTCCTCCACCGTGGCGTGGGGAG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGTGAAAATAGTCTTGGCACCCTTCCTCCACCGTGGCGTGGGGAG  1114

seq1  AAGCCCACACTGCGCAGCTGTCTGGCCACAGGGCGGCTGCTACAGTAACT  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCACACTGCGCAGCTGTCTGGCCACAGGGCGGCTGCTACAGTAACT  1164

seq1  GTGTGAACGCCATTGGCTCTCTGCGGTTGCTCGAGATAGGAAAAGCTGAG  1249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAACGCCATTGGCTCTCTGCGGTTGCTCGAGATAGGAAAAGCTGAG  1214

seq1  AATTC  1254
      |||||
seq2  AATTC  1219


seq1: chr8_89441369_89442368
seq2: B6Ng01-347I19.g_67_1069

seq1  GAATTCTTTGGCATCTCATCTAAATCACTGGCACTAGTGACCATTACTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGGCATCTCATCTAAATCACTGGCACTAGTGACCATTACTAT  50

seq1  TGGGGTGGTAGATTGCAAGGAAACATATCTTACTGTCTCATGTTATTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTGGTAGATTGCAAGGAAACATATCTTACTGTCTCATGTTATTTAT  100

seq1  GTTGAAAGTTGCCTGCCTGGACCTAGCTTTTTAGTTAAGTCTTTCCGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAAGTTGCCTGCCTGGACCTAGCTTTTTAGTTAAGTCTTTCCGTGA  150

seq1  TGCCTGTGTTGAGTGAGCATTTGCTTCAGTGTTTGCTATTTCCTCTGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTGTTGAGTGAGCATTTGCTTCAGTGTTTGCTATTTCCTCTGCTT  200

seq1  GGTACTGGTATTGGTTCAGCTCAGTGTTGCTTGATTCTAGTAGTAGACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTGGTATTGGTTCAGCTCAGTGTTGCTTGATTCTAGTAGTAGACAC  250

seq1  TCAGTGTTAGCTCCTGGATGGAGAAACTGAAGGTATATTGGCTTGGCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTTAGCTCCTGGATGGAGAAACTGAAGGTATATTGGCTTGGCTAC  300

seq1  AGTGTGGGCGTGGTCTTTGGTCTCATAAACCAGAGTCTGTACAACATGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGGGCGTGGTCTTTGGTCTCATAAACCAGAGTCTGTACAACATGTT  350

seq1  GGGAGTTTGTACTAGAGGTGGTAGTTTCATGTGTTCTCTGATCTCATGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTTTGTACTAGAGGTGGTAGTTTCATGTGTTCTCTGATCTCATGAT  400

seq1  CCTGAGTTGAGCAGTGTTATAGGGGTGTGTCCCAGGGCCATGACCCCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTTGAGCAGTGTTATAGGGGTGTGTCCCAGGGCCATGACCCCTAA  450

seq1  CTTCATAAGCCAGGGTGCTCATGTGTACTGTGCATGTATGGAATATCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATAAGCCAGGGTGCTCATGTGTACTGTGCATGTATGGAATATCCTC  500

seq1  TGGCTTCTCCAGTTGGGGCAGGAGTGTGCACTGGGGTGTGGGAGGAGATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCTCCAGTTGGGGCAGGAGTGTGCACTGGGGTGTGGGAGGAGATC  550

seq1  AAACACCTCTGGCATTACCGGCCAGTTGAGGACAGGATGCAAGAAGTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCTCTGGCATTACCGGCCAGTTGAGGACAGGATGCAAGAAGTGCA  600

seq1  AAGCAGGGGCCTCTAAAATGCCTTGCTGGGTTGAGCCTGGGATACATATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGGGCCTCTAAAATGCCTTGCTGGGTTGAGCCTGGGATACATATG  650

seq1  AGTCTTGTACCCTTTTCAGCCATGATGAGTGTTCAGGACAGTGTAAGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTGTACCCTTTTCAGCCATGATGAGTGTTCAGGACAGTGTAAGTGT  700

seq1  TAGCAGGAGAATTGGGAGAGCAGAAGGTCTTGAGACTTCTAGTCTGACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGGAGAATTGGGAGAGCAGAAGGTCTTGAGACTTCTAGTCTGACCA  750

seq1  GCTGGAGCTGGTATAAAGTAGCGGAAACACAGAGCAGCAGACATTGTAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGCTGGTATAAAGTAGCGGAAACACAGAGCAGCAGACATTGTAGT  800

seq1  CTCCACAGAGCCAGAGCCCTTTTCTGCTGGGATAATCACACAGTGTGTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACAGAGCCAGAGCCCTTTTCTGCTGGGATAATCACACAGTGTGTGC  850

seq1  GAGGGTGTGAAGGTTCCAGGGTAAGCAGGATAGTGGGACATGGCTCTGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTGTGAAGGTTCCAGGGTAAGCAGGATAGTGGGACATGGCTCTGGT  900

seq1  AGGGGTTCACAGAGAGTGGAAGGATGAGTGAGAGATCTCAAGGTCTCTAA  950
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGGGGTTCACAGAGAGTGGAAAGATGAGTGAGAGATCTCAAGGTCTCTAA  950

seq1  CTTGTCTGGGA-GGGGTGA-GTGC-AGGACAGCAGGAATACAGGAAAGGG  997
      ||||||||||| ||||||| |||| ||||||||| |||||  ||||||||
seq2  CTTGTCTGGGAGGGGGTGAGGTGCAAGGACAGCATGAATATCGGAAAGGG  1000

seq1  AGA  1000
      |||
seq2  AGA  1003


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