BAC Information

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BAC

Clone NameB6Ng01-348A17
Chromosome8 (Build37)
Map Location 33,513,576 - 33,645,970
singlet/doubletdoublet
Overlap geneEG546052
Upstream geneLOC100041329, EG330731, LOC100041340, Nrg1, 2010007E15Rik, EG666589
Downstream geneLOC100042715, LOC628408, EG628412, Wrn, Purg, LOC666630, Hmgb1-rs17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-348A17.bB6Ng01-348A17.g
ACCGA129459GA129460
length896596
definitionB6Ng01-348A17.b B6Ng01-348A17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,645,077 - 33,645,970)(33,513,576 - 33,514,171)
sequence
gaattctatagcaatatatttatgaacccaatggttagaagtatgaactt
aggactttagtcctcacattatgaaccatataaaacttgaccaagtcatc
taacctctttaagattccatttctttcttggaccaggggaaataacagtg
ggatttgtctttcacaaatgagagagtagaaaaatgatataatgcacaag
aaagcatcagaagagagaaaaatgtgttgacttcacaaatgttgtttctc
actcagaataaagagagatgcttttcttcacagtcacagaaatctttgcc
ttttcagagcagatttgaatattgtacaggaaaggagttatatagaaaaa
gctagttgttgtgaaatttatacgatactatgtttgttgaagtttggttg
taagagtgactaaatctttctttgaagattaaccaatcagacacacttgg
aaggatctctaagtttgagaagtattgctaaattttccaagaacactata
aactctcattaatatgctgcatttgcgtcttaatgtgttttttcgtgtcg
gtttcctttcagtgagaattcttagagacttggttcagagatgagaactt
gtgtgtgcctctgtcttctcggaataactgaaaaaaaatactcccaacta
attaaggaaaatgttttaatgtcatattcctttttataccacttggagat
agatatcagaaagaaaaaatgaattataattttctaataacaggatttat
gggattatgagagttcattatcctaatttttcagtcttaaaaattatccc
catttgataataaataattaatgacctatatcaagaagtatttcacaata
aactgagaaaccactagaagagatatgggtgtgggggggggattga

gaattcaattaaatatatatttaaaggcaagaatgttttatttttcttca
agtcatctgtttaaaaaaaagtacattcctaggagatctaacacctagat
gataaacctctgacgacatccaataagcctaagttaaatgcaaagacttg
ttctcagaaagcccttctccaaaggttaactggccaactgaatagcagat
cgtagctgaagaaacatttcaactgccctccatagaagaaagcctcaaaa
gacgccatcttatctagtgactgaaaataagaatgatctccattcagttg
ggaagaaaagataacaaaaacattcctaatttctttagtttggggggatg
tttcagatgtaagtgtttggtttatttgcttttaattgtcttctatgtta
aacactgcatagtttttgtgggggtaaggatagagacagatcttaaattt
gcctctagctgaacattgcatttattgcttccttatgactgacaagttta
ttctactttgtcaacagctgaacagctcacttctggttaaccaccagtag
atgcagtcagagaaaacaacacgacctaggtcatattgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_33645077_33645970
seq2: B6Ng01-348A17.b_46_941 (reverse)

seq1  TCAAT--CCCCCCCACACCCATATCTCTTCTAGTGGTTTCTCAGTTTATT  48
      |||||  |||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCCCCCCCCCACACCCATATCTCTTCTAGTGGTTTCTCAGTTTATT  50

seq1  GTGAAATACTTCTTGATATAGGTCATTAATTATTTATTATCAAATGGGGA  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATACTTCTTGATATAGGTCATTAATTATTTATTATCAAATGGGGA  100

seq1  TAATTTTTAAGACTGAAAAATTAGGATAATGAACTCTCATAATCCCATAA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTAAGACTGAAAAATTAGGATAATGAACTCTCATAATCCCATAA  150

seq1  ATCCTGTTATTAGAAAATTATAATTCATTTTTTCTTTCTGATATCTATCT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGTTATTAGAAAATTATAATTCATTTTTTCTTTCTGATATCTATCT  200

seq1  CCAAGTGGTATAAAAAGGAATATGACATTAAAACATTTTCCTTAATTAGT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTGGTATAAAAAGGAATATGACATTAAAACATTTTCCTTAATTAGT  250

seq1  TGGGAGTATTTTTTTTCAGTTATTCCGAGAAGACAGAGGCACACACAAGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGTATTTTTTTTCAGTTATTCCGAGAAGACAGAGGCACACACAAGT  300

seq1  TCTCATCTCTGAACCAAGTCTCTAAGAATTCTCACTGAAAGGAAACCGAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATCTCTGAACCAAGTCTCTAAGAATTCTCACTGAAAGGAAACCGAC  350

seq1  ACGAAAAAACACATTAAGACGCAAATGCAGCATATTAATGAGAGTTTATA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAAAAACACATTAAGACGCAAATGCAGCATATTAATGAGAGTTTATA  400

seq1  GTGTTCTTGGAAAATTTAGCAATACTTCTCAAACTTAGAGATCCTTCCAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTTGGAAAATTTAGCAATACTTCTCAAACTTAGAGATCCTTCCAA  450

seq1  GTGTGTCTGATTGGTTAATCTTCAAAGAAAGATTTAGTCACTCTTACAAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCTGATTGGTTAATCTTCAAAGAAAGATTTAGTCACTCTTACAAC  500

seq1  CAAACTTCAACAAACATAGTATCGTATAAATTTCACAACAACTAGCTTTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTCAACAAACATAGTATCGTATAAATTTCACAACAACTAGCTTTT  550

seq1  TCTATATAACTCCTTTCCTGTACAATATTCAAATCTGCTCTGAAAAGGCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATATAACTCCTTTCCTGTACAATATTCAAATCTGCTCTGAAAAGGCA  600

seq1  AAGATTTCTGTGACTGTGAAGAAAAGCATCTCTCTTTATTCTGAGTGAGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTCTGTGACTGTGAAGAAAAGCATCTCTCTTTATTCTGAGTGAGA  650

seq1  AACAACATTTGTGAAGTCAACACATTTTTCTCTCTTCTGATGCTTTCTTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACATTTGTGAAGTCAACACATTTTTCTCTCTTCTGATGCTTTCTTG  700

seq1  TGCATTATATCATTTTTCTACTCTCTCATTTGTGAAAGACAAATCCCACT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTATATCATTTTTCTACTCTCTCATTTGTGAAAGACAAATCCCACT  750

seq1  GTTATTTCCCCTGGTCCAAGAAAGAAATGGAATCTTAAAGAGGTTAGATG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTCCCCTGGTCCAAGAAAGAAATGGAATCTTAAAGAGGTTAGATG  800

seq1  ACTTGGTCAAGTTTTATATGGTTCATAATGTGAGGACTAAAGTCCTAAGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGTCAAGTTTTATATGGTTCATAATGTGAGGACTAAAGTCCTAAGT  850

seq1  TCATACTTCTAACCATTGGGTTCATAAATATATTGCTATAGAATTC  894
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACTTCTAACCATTGGGTTCATAAATATATTGCTATAGAATTC  896


seq1: chr8_33513576_33514171
seq2: B6Ng01-348A17.g_63_658

seq1  GAATTCAATTAAATATATATTTAAAGGCAAGAATGTTTTATTTTTCTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTAAATATATATTTAAAGGCAAGAATGTTTTATTTTTCTTCA  50

seq1  AGTCATCTGTTTAAAAAAAAGTACATTCCTAGGAGATCTAACACCTAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATCTGTTTAAAAAAAAGTACATTCCTAGGAGATCTAACACCTAGAT  100

seq1  GATAAACCTCTGACGACATCCAATAAGCCTAAGTTAAATGCAAAGACTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAACCTCTGACGACATCCAATAAGCCTAAGTTAAATGCAAAGACTTG  150

seq1  TTCTCAGAAAGCCCTTCTCCAAAGGTTAACTGGCCAACTGAATAGCAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGAAAGCCCTTCTCCAAAGGTTAACTGGCCAACTGAATAGCAGAT  200

seq1  CGTAGCTGAAGAAACATTTCAACTGCCCTCCATAGAAGAAAGCCTCAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGCTGAAGAAACATTTCAACTGCCCTCCATAGAAGAAAGCCTCAAAA  250

seq1  GACGCCATCTTATCTAGTGACTGAAAATAAGAATGATCTCCATTCAGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGCCATCTTATCTAGTGACTGAAAATAAGAATGATCTCCATTCAGTTG  300

seq1  GGAAGAAAAGATAACAAAAACATTCCTAATTTCTTTAGTTTGGGGGGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAAAGATAACAAAAACATTCCTAATTTCTTTAGTTTGGGGGGATG  350

seq1  TTTCAGATGTAAGTGTTTGGTTTATTTGCTTTTAATTGTCTTCTATGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGATGTAAGTGTTTGGTTTATTTGCTTTTAATTGTCTTCTATGTTA  400

seq1  AACACTGCATAGTTTTTGTGGGGGTAAGGATAGAGACAGATCTTAAATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGCATAGTTTTTGTGGGGGTAAGGATAGAGACAGATCTTAAATTT  450

seq1  GCCTCTAGCTGAACATTGCATTTATTGCTTCCTTATGACTGACAAGTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTAGCTGAACATTGCATTTATTGCTTCCTTATGACTGACAAGTTTA  500

seq1  TTCTACTTTGTCAACAGCTGAACAGCTCACTTCTGGTTAACCACCAGTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACTTTGTCAACAGCTGAACAGCTCACTTCTGGTTAACCACCAGTAG  550

seq1  ATGCAGTCAGAGAAAACAACACGACCTAGGTCATATTGTGTGTGTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTCAGAGAAAACAACACGACCTAGGTCATATTGTGTGTGTG  596


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