BAC Information

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BAC

Clone NameB6Ng01-348B03
Chromosome8 (Build37)
Map Location 106,850,121 - 106,942,651
singlet/doubletdoublet
Overlap geneCmtm2b, Cmtm3, Cmtm4
Upstream gene1600027J07Rik, LOC100041397, LOC667656, Cdh5, Bean, Tk2, Cklf, Cmtm2a
Downstream geneDync1li2, Ccdc79, Appbp1, Car7, LOC628007, 4833426J09Rik, Cdh16, Rrad, 1110019N10Rik, EG637550, LOC382052, LOC100041473, Ces6, LOC628050, 4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-348B03.bB6Ng01-348B03.g
ACCGA129475GA129476
length1,115629
definitionB6Ng01-348B03.b B6Ng01-348B03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,850,121 - 106,851,064)(106,942,023 - 106,942,651)
sequence
gaattctttatccattcctctacaggcactgcccatgccttcggtggcct
tacgactttttttataccccatatttgcattttcacgcggtcgggtcttc
atcaatacctgccttatgtcagggtctgatattattttacttattactga
gatacatcttggtaaaataaaaaaaaaatcagtgacggcttctccagaac
tttgtataacttttttttttttttgaatgatgtagatttctttcctggct
cctcaactttattccaagctcttaaagctgctaaaccacattattatgat
tgtgtcttcatattgaacctattcttgaacatcagcatagtgacctttcc
ctatcaactggcccctcaccatttcaactcatctgggtctatccccgtgt
cccaaatccctggcttcttctctccaccatacaaccactgccactgaaga
cagttgctatcaatgccctccagtcttggggaataataattctattttga
gtagaccaattctttagagtttgtttcacatggggtaaatgtagctcata
agacatcattggcttcctaaaatgatgtaggtccttcatttctataagat
gccttccttatttcataaacttgtgggttaacctcactggcaggcatatg
ctagataatattggaaatgctttaatggttttttttttttttatcacatg
tcctttaatgtttctccttcaaactgcttgtcacactgggggctatggta
gcttttaaaaaaaaattgttgcttcttaaattctttgtctttgtaatttt
tttttaaagatccatttatatatgtgaacacagtattgccgtcttaagac
acaccagaaggagggcatcagatctcattacagatgtttgtgaaccacca
tgtggttgctgggagtgactcagaacctctggaagagcagtcagtgctct
taaccactgagccatctctccagccctgtctttgtattttttctaaagct
cttatttgtgggctcttcttttatctgtctctaattcttctgctcagtga
gcgtctctattcaatgccacaacctgtctccagtcactagccaattcact
tcactgtctcttatt
gaattcttgcaaagacactgcctaatagtgtgattttgaaaccttgatac
aaaagttaaagtgtatcactggaacgggtaggcactttttgtgttgatgt
caagtgtgctctaaccaactgaggaaatgctgaggtcggagtgggaggga
ggcttggagaccattgtgttattcctttgatacttggatgcgcctagttt
cagaagaaactgatgcgtgttgtcatgtgctcagtagttgccaaagtcca
ccagctttgcggagcttcagggttttttgggggtttgaggagatgaggta
atttttattattttaggagtttcaagcattggaaccaaaggccaaataat
aaacagcctttactttttagagtaaaattaattctatttgcaagaataca
cttgcatggtagactataaaagacaattttatgactatttatacacatta
taatgattacctctgtttgtctttaaatggataattttaagtaagcccag
cctaaaaattatagcccacatgagggctgtgaattggtctttcctaaaaa
tccaacatatatgctgctagattattttattttatttgcattttttttaa
taacagggagggtttctttgtattgccct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_106850121_106851064
seq2: B6Ng01-348B03.b_230_1160

seq1  ACGGCTTCTCCAGAACTTTGTATAACTTTTTTTTTTTTTTGAATGATGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCTTCTCCAGAACTTTGTATAACTTTTTTTTTTTTTTGAATGATGTA  50

seq1  GATTTCTTTCCTGGCTCCTCAACTTTATTCCAAGCTCTTAAAGCTGCTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTTTCCTGGCTCCTCAACTTTATTCCAAGCTCTTAAAGCTGCTAA  100

seq1  ACCACATTATTATGATTGTGTCTTCATATTGAACCTATTCTTGAACATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACATTATTATGATTGTGTCTTCATATTGAACCTATTCTTGAACATCA  150

seq1  GCATAGTGACCTTTCCCTATCAACTGGCCCCTCACCATTTCAACTCATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGTGACCTTTCCCTATCAACTGGCCCCTCACCATTTCAACTCATCT  200

seq1  GGGTCTATCCCCGTGTCCCAAATCCCTGGCTTCTTCTCTCCACCATACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTATCCCCGTGTCCCAAATCCCTGGCTTCTTCTCTCCACCATACAA  250

seq1  CCACTGCCACTGAAGACAGTTGCTATCAATGCCCTCCAGTCTTGGGGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGCCACTGAAGACAGTTGCTATCAATGCCCTCCAGTCTTGGGGAAT  300

seq1  AATAATTCTATTTTGAGTAGACCAATTCTTTAGAGTTTGTTTCACATGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTCTATTTTGAGTAGACCAATTCTTTAGAGTTTGTTTCACATGGG  350

seq1  GTAAATGTAGCTCATAAGACATCATTGGCTTCCTAAAATGATGTAGGTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATGTAGCTCATAAGACATCATTGGCTTCCTAAAATGATGTAGGTCC  400

seq1  TTCATTTCTATAAGATGCCTTCCTTATTTCATAAACTTGTGGGTTAACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTCTATAAGATGCCTTCCTTATTTCATAAACTTGTGGGTTAACCT  450

seq1  CACTGGCAGGCATATGCTAGATAATATTGGAAATGCTTTAATGGTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGCAGGCATATGCTAGATAATATTGGAAATGCTTTAATGGTTTTTT  500

seq1  TTTTTTTTATCACATGTCCTTTAATGTTTCTCCTTCAAACTGCTTGTCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTATCACATGTCCTTTAATGTTTCTCCTTCAAACTGCTTGTCAC  550

seq1  ACTGGGGGCTATGGTAGCTTTTAAAAAAAAATTGTTGCTTCTTAAATTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGGGCTATGGTAGCTTTTAAAAAAAAATTGTTGCTTCTTAAATTCT  600

seq1  TTGTCTTTGTAATTTTTTTTTAAAGATCCATTTATATATGTGAACACAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTTGTAATTTTTTTTTAAAGATCCATTTATATATGTGAACACAGT  650

seq1  ATTGCCGTCTTAAGACACACCAGAA-GAGGGCATCAGATCTCATTACAGA  699
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATTGCCGTCTTAAGACACACCAGAAGGAGGGCATCAGATCTCATTACAGA  700

seq1  TGTTTGTGAACCACCATGTGGTTGCTGGGAGTGAACTCAGGACCTCTGGA  749
      ||||||||||||||||||||||||||||||||| |||||| |||||||||
seq2  TGTTTGTGAACCACCATGTGGTTGCTGGGAGTG-ACTCAGAACCTCTGGA  749

seq1  AGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCTGTCTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCTGTCTTT  799

seq1  GTA-TTTTTCTAAAGCTCCTTTATTTGTGGGCTCTTCTTTTATCTGTCTC  848
      ||| ||||||||||||||  ||||||||||||||||||||||||||||| 
seq2  GTATTTTTTCTAAAGCTC--TTATTTGTGGGCTCTTCTTTTATCTGTCT-  846

seq1  CTAATATCTTCTGCTCAGGTGAGCGTCTCCTATTTCAAATGCCACCAACT  898
      ||||| ||||||||||| |||||||||| |||||   |||||||| | ||
seq2  CTAAT-TCTTCTGCTCA-GTGAGCGTCT-CTATT--CAATGCCACAACCT  891

seq1  GTCTTCTCAGTCAACTAGCCCAATTCACTTTCAACTGTCTCTTATT  944
      ||||   ||||| ||||| |||||||||||   |||||||||||||
seq2  GTCT--CCAGTC-ACTAG-CCAATTCACTT--CACTGTCTCTTATT  931

seq1: chr8_106942023_106942651
seq2: B6Ng01-348B03.g_64_692 (reverse)

seq1  AGGGCAATACAAAGAAACCCTCCCTGTTATTAAAAAAAATGCAAATAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAATACAAAGAAACCCTCCCTGTTATTAAAAAAAATGCAAATAAAA  50

seq1  TAAAATAATCTAGCAGCATATATGTTGGATTTTTAGGAAAGACCAATTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAATCTAGCAGCATATATGTTGGATTTTTAGGAAAGACCAATTCA  100

seq1  CAGCCCTCATGTGGGCTATAATTTTTAGGCTGGGCTTACTTAAAATTATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCTCATGTGGGCTATAATTTTTAGGCTGGGCTTACTTAAAATTATC  150

seq1  CATTTAAAGACAAACAGAGGTAATCATTATAATGTGTATAAATAGTCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAAAGACAAACAGAGGTAATCATTATAATGTGTATAAATAGTCATA  200

seq1  AAATTGTCTTTTATAGTCTACCATGCAAGTGTATTCTTGCAAATAGAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTCTTTTATAGTCTACCATGCAAGTGTATTCTTGCAAATAGAATT  250

seq1  AATTTTACTCTAAAAAGTAAAGGCTGTTTATTATTTGGCCTTTGGTTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTACTCTAAAAAGTAAAGGCTGTTTATTATTTGGCCTTTGGTTCCA  300

seq1  ATGCTTGAAACTCCTAAAATAATAAAAATTACCTCATCTCCTCAAACCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTGAAACTCCTAAAATAATAAAAATTACCTCATCTCCTCAAACCCC  350

seq1  CAAAAAACCCTGAAGCTCCGCAAAGCTGGTGGACTTTGGCAACTACTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAACCCTGAAGCTCCGCAAAGCTGGTGGACTTTGGCAACTACTGAG  400

seq1  CACATGACAACACGCATCAGTTTCTTCTGAAACTAGGCGCATCCAAGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGACAACACGCATCAGTTTCTTCTGAAACTAGGCGCATCCAAGTAT  450

seq1  CAAAGGAATAACACAATGGTCTCCAAGCCTCCCTCCCACTCCGACCTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGAATAACACAATGGTCTCCAAGCCTCCCTCCCACTCCGACCTCAG  500

seq1  CATTTCCTCAGTTGGTTAGAGCACACTTGACATCAACACAAAAAGTGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCTCAGTTGGTTAGAGCACACTTGACATCAACACAAAAAGTGCCT  550

seq1  ACCCGTTCCAGTGATACACTTTAACTTTTGTATCAAGGTTTCAAAATCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGTTCCAGTGATACACTTTAACTTTTGTATCAAGGTTTCAAAATCAC  600

seq1  ACTATTAGGCAGTGTCTTTGCAAGAATTC  629
      |||||||||||||||||||||||||||||
seq2  ACTATTAGGCAGTGTCTTTGCAAGAATTC  629