BAC Information

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BAC

Clone NameB6Ng01-348F06
Chromosome8 (Build37)
Map Location 50,019,320 - 50,120,296
singlet/doubletdoublet
Overlap geneLOC100039866
Upstream geneWwc2, LOC100040113, Dctd, Odz3, 2900073C17Rik
Downstream gene4930555F03Rik, LOC100039919
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-348F06.bB6Ng01-348F06.g
ACCGA129652GA129653
length1461,099
definitionB6Ng01-348F06.b B6Ng01-348F06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,120,151 - 50,120,296)(50,019,320 - 50,020,421)
sequence
aacagagtagctgccttgttgctggttttctctgttctacctgagcattc
ttagagatgctgttcagcgattctgcagggaacccatcattaggatgatg
atgatgatgatggtgatgatggtgatggtgatgacggtgatggtga
gaattctcgttacaaactgaatttatctcaaattcacacagtaagaaaaa
gactcttgttttggatatgaagttaatttaaatctactagcttgaatgca
aaataataccagtgacaacgacacattgattgtctattgtcctagaggtt
ttagctgtggtcctggtctttcaacctctggagtgatttttacataaaat
ggtggagtatacttgaatgaataacgtagaaatttgtgcaagtaacttac
tttttttttcatgtgtaaaatcttattattcctacatactgacattttac
atcggttccataatttagaaagctcgttgcttcgtgggaatttaattttg
aattgtattaaaagaagaggctgccaattaggagaaagcgggggaaaaaa
aactcagtcttccactcattaagcccaatgagtctggaacttttaaaacg
attttctctgagaacccagatctcctggaaataccgctgtgcacacatcc
tgagcagagccagcttgtcagccttcctgttgtaaattcctttctagcat
cttagtagaagacacttcccattttgtggaaacccttcagaatgtgattt
taaatgaacctgttcacaaggttcaaagctttaaattgctagaccacagt
taccattgagaaaacgcactgagcaatataagaagtgagaaaaaccataa
ccaggtacaagttaaattctctagggtcgccatgtaagtgcctctcagaa
aggattaagacttctggagaacaagaaagccccaaacaattcacttccaa
gagtgggagacatacacccaggcggcccattgtgcttggcctactttatg
cctgtagctgattcacttaggttttttgttttgttttgttttcttcagag
attctgtattttagcgtgtcctcattcatttaatcttcccagaaggaaga
aaaaaaatgtccgtagaacgtgatggcttttgttggctcaaaccactgca
atccaaacaacggtggctttacagatcgatgaaataaatgactgcctgtg
atcagactcaagggtgaccacagctgcaggctctgcctggaagactcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_50120151_50120296
seq2: B6Ng01-348F06.b_50_195 (reverse)

seq1  TCACCATCACCGTCATCACCATCACCATCATCACCATCATCATCATCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCATCACCGTCATCACCATCACCATCATCACCATCATCATCATCATC  50

seq1  ATCCTAATGATGGGTTCCCTGCAGAATCGCTGAACAGCATCTCTAAGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAATGATGGGTTCCCTGCAGAATCGCTGAACAGCATCTCTAAGAAT  100

seq1  GCTCAGGTAGAACAGAGAAAACCAGCAACAAGGCAGCTACTCTGTT  146
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGGTAGAACAGAGAAAACCAGCAACAAGGCAGCTACTCTGTT  146

seq1: chr8_50019320_50020421
seq2: B6Ng01-348F06.g_69_1167

seq1  GAATTCTCGTTACAAACTGAATTTATCTCAAATTCACACAGTAAGAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCGTTACAAACTGAATTTATCTCAAATTCACACAGTAAGAAAAA  50

seq1  GACTCTTGTTTTGGATATGAAGTTAATTTAAATCTACTAGCTTGAATGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTTGTTTTGGATATGAAGTTAATTTAAATCTACTAGCTTGAATGCA  100

seq1  AAATAATACCAGTGACAACGACACATTGATTGTCTATTGTCCTAGAGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATACCAGTGACAACGACACATTGATTGTCTATTGTCCTAGAGGTT  150

seq1  TTAGCTGTGGTCCTGGTCTTTCAACCTCTGGAGTGATTTTTACATAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTGTGGTCCTGGTCTTTCAACCTCTGGAGTGATTTTTACATAAAAT  200

seq1  GGTGGAGTATACTTGAATGAATAACGTAGAAATTTGTGCAAGTAACTTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAGTATACTTGAATGAATAACGTAGAAATTTGTGCAAGTAACTTAC  250

seq1  TTTTTTTTTCATGTGTAAAATCTTATTATTCCTACATACTGACATTTTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTCATGTGTAAAATCTTATTATTCCTACATACTGACATTTTAC  300

seq1  ATCGGTTCCATAATTTAGAAAGCTCGTTGCTTCGTGGGAATTTAATTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGTTCCATAATTTAGAAAGCTCGTTGCTTCGTGGGAATTTAATTTTG  350

seq1  AATTGTATTAAAAGAAGAGGCTGCCAATTAGGAGAAAGCGGGGGAAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTATTAAAAGAAGAGGCTGCCAATTAGGAGAAAGCGGGGGAAAAAA  400

seq1  AACTCAGTCTTCCACTCATTAAGCCCAATGAGTCTGGAACTTTTAAAACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGTCTTCCACTCATTAAGCCCAATGAGTCTGGAACTTTTAAAACG  450

seq1  ATTTTCTCTGAGAACCCAGATCTCCTGGAAATACCGCTGTGCACACATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTCTGAGAACCCAGATCTCCTGGAAATACCGCTGTGCACACATCC  500

seq1  TGAGCAGAGCCAGCTTGTCAGCCTTCCTGTTGTAAATTCCTTTCTAGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGAGCCAGCTTGTCAGCCTTCCTGTTGTAAATTCCTTTCTAGCAT  550

seq1  CTTAGTAGAAGACACTTCCCATTTTGTGGAAACCCTTCAGAATGTGATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTAGAAGACACTTCCCATTTTGTGGAAACCCTTCAGAATGTGATTT  600

seq1  TAAATGAACCTGTTCACAAGGTTCAAAGCTTTAAATTGCTAGACCACAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGAACCTGTTCACAAGGTTCAAAGCTTTAAATTGCTAGACCACAGT  650

seq1  TACCATTGAGAAAACGCACTGAGCAATATAAGAAGTGAGAAAAACCATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATTGAGAAAACGCACTGAGCAATATAAGAAGTGAGAAAAACCATAA  700

seq1  CCAGGTACAAGTTAAATTCTCTAGGGTCGCCATGTAAGTGCCTCTCAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTACAAGTTAAATTCTCTAGGGTCGCCATGTAAGTGCCTCTCAGAA  750

seq1  AGGATTAAGACTTCTGGAGAACAAGAAAGCCCCAAACAATTCACTTCCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTAAGACTTCTGGAGAACAAGAAAGCCCCAAACAATTCACTTCCAA  800

seq1  GAGTGGGAGACATACACCCAGGCGGCCCATTGTGCTTGGCCTACTTTATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGGAGACATACACCCAGGCGGCCCATTGTGCTTGGCCTACTTTATG  850

seq1  CCTGTAGCTGATTCACTTAGGTTTTTTGTTTTGTTTTGTTTTCTTCAGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAGCTGATTCACTTAGGTTTTTTGTTTTGTTTTGTTTTCTTCAGAG  900

seq1  ATTCTGTATTTTAGCGTGTCCTCATTCATTTAATCTT-CCAGAAGGAAG-  948
      ||||||||||||||||||||||||||||||||||||| ||||||||||| 
seq2  ATTCTGTATTTTAGCGTGTCCTCATTCATTTAATCTTCCCAGAAGGAAGA  950

seq1  AAAAAAATGTCCGTAGAAACGTGATGGCTTTTGTTGGCTCAAAACCACTG  998
      |||||||||||||||| ||||||||||||||||||||||| |||||||||
seq2  AAAAAAATGTCCGTAG-AACGTGATGGCTTTTGTTGGCTC-AAACCACTG  998

seq1  CAAATCCAAACAACGGTGGCTTTTACAGAATCGATGAAATAAATGACTG-  1047
      | |||||||||||||||||| ||||||| |||||||||||||||||||| 
seq2  C-AATCCAAACAACGGTGGC-TTTACAG-ATCGATGAAATAAATGACTGC  1045

seq1  CTGTGATCCAGACTCAGGGGTGA-CACAGCCTTGGCAGCTCTG-CTGAAG  1095
      ||||||| |||||||| |||||| ||||||  ||   |||||| ||| | 
seq2  CTGTGAT-CAGACTCAAGGGTGACCACAGC--TGCAGGCTCTGCCTGGAA  1092

seq1  GACTCAT  1102
      |||||||
seq2  GACTCAT  1099