BAC Information

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BAC

Clone NameB6Ng01-350A10
Chromosome8 (Build37)
Map Location 19,758,475 - 19,759,597
singlet/doubletsinglet
Overlap gene4930467E23Rik
Upstream geneMcph1, Agpat5, LOC100040486, Xkr5, Defb40, Defb37, Defb38, Defb39, Defb12, Defb34, EG546038, Spag11, Defb14, Defb4, EG654452, Defb6, EG574081, Defb5, Defb3, Defb54-ps, LOC100040504, LOC100040514, Defb8, LOC100040528, LOC100041511, Defb7, LOC670326, LOC100040561, LOC624198, EG665730
Downstream geneLOC100041567, LOC547150, LOC100040599, EG665822, 6820431F20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-350A10.bB6Ng01-350A10.g
ACCGA130834GA130835
length1,102768
definitionB6Ng01-350A10.b B6Ng01-350A10.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctatgcttccgaggaaaggtacggaaaataggtggtttatttcct
cgcacctataaggaaaattggcaatgttacttttgatttaaagtttcact
gattttattcattttatcacctgtctgctaatgtcagaatcttgatttat
agtccccaaaatgtttctgtattcagaccaacttcatcactaaggacact
atctgatattcagcaacctctgcttcctttctgcatgatgagtaaaaggc
ccagagtatctagaaatctttgatggggacctgcttagtgttatgctttt
atcttctgctctttcctacctcacatcatcattctctacaaaatggaaag
acataaaaagaaaggacaaaatgtgtcctctcctgtctttatgacctgaa
ttttgaattccagccagatgaggtgaatagggcagtgaggttctctgaaa
acaaaaggaacctctctcttctgcactacactaacccttccccaatgaat
gatcttccacagttgtccattagatacctgggatatcagaacagtggagc
tgaattgtaaaatgcatgaatcaagtatgtcactacctacagcagagggg
aattgctgagttccatggatggattctatatatgccttccaaaatctcac
ctattagctctatgtcaaagtaacttttatgcactaggtgtaattgtaat
ctttgatgcttactacctccatctgagtgataacctagacctagtcctgg
aagcttctagcctctgtgaaacttagcataggcctagaatattttctgcc
tctcatacttactgctgaataagcacaccgttatttctggttctttttca
tctctggctgactggttcaactcagtgttctagctcaaagctgctcccca
tgctaactgattcagtctggattctctcttggcctctgatgttttttgtc
tgctgacctcaactaactagcattttttctatctctgactctcatatctc
tggtcatctgctcaccgtgtctgctgttctctctcatgatctctctaaac
tctctgggtaaaatgcctcctcctctctgtttctctctgcactaccttct
ca
gaattctctgtttagctatttaccccatttttaaattgatttatgagttt
ctaacttcttgtgttctttatatattttggactttagttctctctcaagt
gtagggttggtgggtatcttttcccaatatgtaggcttccattttttcct
attgacaatgtcctttgtcttgcagaagtttttcagtttcatgagtccct
atgtttcaagtattgatcttagagcctgagacattggtgttctgttcaga
aaattgtctactgaaccaatgtatcaaggatatttcccaccttgtctcct
agcaaatttagtgtatctggtttagtggtctagaggtctttggtgcctgt
gaactcaagttttgtgctgggggataaatataggtctatatgcattcatc
ctcttgtagatgtccagttagacctgcaacatttgttgaagatattttct
ttctttttttccattgtatgacttttatgtcaaaatcaagtgttggtggg
tgtgtgacttatttctgggtcttcgatttgattccacagaccaacttgtt
catttccataggtataccatgcagtttttattctgattgctctgtggtac
gtcttgagactaggtatgatgatacatccaggaattattttattatatat
agtcatcttgcattttttgtttttgataggaagctaagaattgctgtttc
tcattctgtaagtaattgtgttggaattttggtgggaaatgtacttggtg
gggaagatggttttggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_19758475_19759597
seq2: B6Ng01-350A10.b_43_1144 (reverse)

seq1  TGAG-AGGTAGTGCAGAGAGAAACAGAGA-GAGGAGGCATTTTTACCCAG  48
      |||| |||||||||||||||||||||||| ||||||||| ||||||||||
seq2  TGAGAAGGTAGTGCAGAGAGAAACAGAGAGGAGGAGGCA-TTTTACCCAG  49

seq1  ACAGTTTTAGAGAGATTCATTGAAGAGAGAACCAGCAAGACACGGGTGAA  98
      | || |||||||||| ||||   |||||||| |||| |||||| ||||| 
seq2  AGAG-TTTAGAGAGA-TCAT--GAGAGAGAA-CAGC-AGACAC-GGTGA-  91

seq1  GGCAGAATGAACCAGAGAATATGAAGGAGTCAGAAGATTAGAAAAAAATT  148
       |||| ||| ||||||| ||||||  ||||||| ||| |||||||||  |
seq2  -GCAG-ATG-ACCAGAG-ATATGA--GAGTCAG-AGA-TAGAAAAAA--T  131

seq1  GCTAGTTAGTTTGAGGTCAAGCAGAACAAAAAACATCAGAGGCCAAGAGA  198
      ||||||||| |||||||| ||||| |||||||||||||||||||||||||
seq2  GCTAGTTAG-TTGAGGTC-AGCAG-ACAAAAAACATCAGAGGCCAAGAGA  178

seq1  GAATCCAGACTGAATCAGTTAGCATGGGGAGCAGCTTTGAGCTAGAACAC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GAATCCAGACTGAATCAGTTAGCATGGGGAGCAGCTTTGAGCTAGAACA-  227

seq1  CTGAGTTGAACCAGTCAGCCAGAGATGAAAAAGAACCAGAAATAATGGTG  298
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTGAGTTGAACCAGTCAGCCAGAGATGAAAAAGAACCAGAAATAACGGTG  277

seq1  TGCTTATTCAGCAGTAAGTATGAGAGGCAGAAAATATTCTAGGCCTATGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTATTCAGCAGTAAGTATGAGAGGCAGAAAATATTCTAGGCCTATGC  327

seq1  TAAGTTTCACAGAGGCTAGAAGCTTCCAGGACTAGGTCTAGGTTATCACT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTCACAGAGGCTAGAAGCTTCCAGGACTAGGTCTAGGTTATCACT  377

seq1  CAGATGGAGGTAGTAAGCATCAAAGATTACAATTACACCTAGTGCATAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGGAGGTAGTAAGCATCAAAGATTACAATTACACCTAGTGCATAAA  427

seq1  AGTTACTTTGACATAGAGCTAATAGGTGAGATTTTGGAAGGCATATATAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACTTTGACATAGAGCTAATAGGTGAGATTTTGGAAGGCATATATAG  477

seq1  AATCCATCCATGGAACTCAGCAATTCCCCTCTGCTGTAGGTAGTGACATA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCATCCATGGAACTCAGCAATTCCCCTCTGCTGTAGGTAGTGACATA  527

seq1  CTTGATTCATGCATTTTATAATTCAGCTCCACTGTTCTGATATCCCAGGT  598
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CTTGATTCATGCATTTTACAATTCAGCTCCACTGTTCTGATATCCCAGGT  577

seq1  ATCTAATGGACAACTGTGGAAGATCATTCATTGGGGAAGGGTTAGTGTAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAATGGACAACTGTGGAAGATCATTCATTGGGGAAGGGTTAGTGTAG  627

seq1  TGCAGAAGAGAGAGGTTCCTTTTGTTTTCAGAGCACCTCACTGCCCTATT  698
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGCAGAAGAGAGAGGTTCCTTTTGTTTTCAGAGAACCTCACTGCCCTATT  677

seq1  CACCTCATCTGGCTGGAATTCAAAATTCAGGTCATAAAGACAGGAGAGGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCATCTGGCTGGAATTCAAAATTCAGGTCATAAAGACAGGAGAGGA  727

seq1  CACATTTTGTCCTTTCTTTTTATGTCTTTCCATTTTGTAGAGAATGATGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTTGTCCTTTCTTTTTATGTCTTTCCATTTTGTAGAGAATGATGA  777

seq1  TGTGAGGTAGCAAAGAGCAGAAGATAAAAGCATAACACTAAGCAGGTCCC  848
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGGTAGGAAAGAGCAGAAGATAAAAGCATAACACTAAGCAGGTCCC  827

seq1  CATCAAAGATTTCTAGATACTCTGGGCCTTTTACTCATCATGCAGAAAGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAAGATTTCTAGATACTCTGGGCCTTTTACTCATCATGCAGAAAGG  877

seq1  AAGCAGAGGTTGCTGAATATCAGATAGTGTCCTTAGTGATGAAGTTGGTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGAGGTTGCTGAATATCAGATAGTGTCCTTAGTGATGAAGTTGGTC  927

seq1  TGAATACAGAAACATTTTGGGGACTATAAATCAAGATTCTGACATTAGCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATACAGAAACATTTTGGGGACTATAAATCAAGATTCTGACATTAGCA  977

seq1  GACAGGTGATAAAATGAATAAAATCAGTGAAACTTTAAATCAAAAGTAAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGTGATAAAATGAATAAAATCAGTGAAACTTTAAATCAAAAGTAAC  1027

seq1  ATTGCCAATTTTCCTTATAGGTGCGAGGAAATAAACCACCTATTTTCCGT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCAATTTTCCTTATAGGTGCGAGGAAATAAACCACCTATTTTCCGT  1077

seq1  ACCTTTCCTCGGAAGCATAGAATTC  1123
      |||||||||||||||||||||||||
seq2  ACCTTTCCTCGGAAGCATAGAATTC  1102