BAC Information

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BAC

Clone NameB6Ng01-350I11
Chromosome8 (Build37)
Map Location 4,023,529 - 4,024,604
singlet/doubletsinglet
Overlap genenone
Upstream geneEG664801, EG209786, D630014A15Rik, Insr, A430078G23Rik, Arhgef18, Pex11c, 1700019B03Rik, Zfp358, Mcoln1, Pnpla6, C330021F23Rik, 2310057J16Rik, Xab2, Pcp2, Stxbp2, Retn, 1810033B17Rik, LOC664858, Trappc5, Fcer2a, Clec4g, Cd209a, LOC664870, Cd209e, Cd209d, Cd209b, Cd209c, LOC664888, EG384770, EG664905
Downstream geneLOC664915, LOC664922, LOC631071, Cd209f, Cd209g, B130050I23Rik, BC068157, Lrrc8e, Map2k7, LOC100039590, Snapc2, Ctxn1, Timm44, Elavl1, Ccl25, LOC664977, Ppia-ps8_36.1, Lass4, Vmn2r-ps89, EG633533, BC003267, LOC665021, EG623133, EG665044, EG623223, LOC100040234, Shcbp1, EG622568, LOC669393, EG631359, LOC100039687
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-350I11.bB6Ng01-350I11.g
ACCGA131172GA131173
length1,0711,203
definitionB6Ng01-350I11.b B6Ng01-350I11.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactagatgttttagcctctggagatcttcagaaagattatttgg
tagtgaggttcttaaccatttaagccccttgagttatttcaatctgtcat
attgtgaaggaaattcctgggaactttttttgtttcctctttcaaattac
ttgactctccttggttcacaatgtgaactccagatgcaggtttcttttgt
tcataattcccaatccattccttctaatcctacccaccaccatgccttcc
tcctccatttttctttagaaaagggcaggacttcaatggatattaaccaa
atatgtcatataaagttgtagtaagactagacacctcccctcatattaaa
tctagaaaaggcaagactgtaagagagaaaaggggtccaaaaagcaggct
aaagagtcaaacacacacactgttagcagtcccacaagaagaccaagcta
tacaaatgtaacatgtattcagagaacctacatcagacccatgaagggcc
tttggttattgatccagtctctgtgaggatctatgagcacagaatagttg
attctgtggtttttctgtggtgtctttgatccctctggttcctataattc
tcattttcagcaagattccctgagctcctcctaatgtttggctgtgtgtt
tctgcatgtgtttacattacttgctagatgaagcctctctggtggcaatt
gagttatgaaataatctatgagtatgacagaatattattagacatcattt
cattaacacatctctttgctagacatgtgaggtcctatcccaagtctctg
ggctattcagcctctggtttctgattctttaggcagtgtcaagggtggac
ttgacccagcacattatactggcagaacaattgtaggaagaacgggttgt
ggctgggtttggtgtccaatcccttccaatagaagtctgggccagttaag
gctttacatcccccattgctagtatctagctaggtcaccctatcatttct
tggagttccagtccataaatcttaaagaaagcagtatcccaatctaagag
acatgacaggtctactcagac
gaattcccaggggtccaggttagttgacaccattttgatcttcctatggg
gttgctatccccttcagctccttcattccttcccctaactcttccatagg
agtccctgatctcagtccaatggttggctgtaagtatctgcatctgtttc
agtcacctgctggtagaggcttttagaggacagacatgctagattccaat
ctgcaagtacaacatagcatcagtaatagtgttagggtttggtgcctgcc
catgggatggatcccaagttgggtcagtcactggacaacctttctttcag
tctcttctccatttttgtccccaaatttcctttagacagaaataattctg
ggccaaaaattttgaaggtaggtgggtggtggtgccatcactctactggg
aggcctgtctaactactagaggtgatctcttcagcttctctctccccact
gttgggcattttggctaaggtcatccccattgagtcctgggagcctctca
caccccaggtctctgggaatttctagagaccatccccaacaccctgaagc
tgcatatttatattcattcttctggccgtctgggcttctcttctgtttcc
cctcatacctgatcctgtccccctttcccctcccatccagttccctcctt
ccccctgcctgtcatgattgtttattttgtttcctcttataaatgagatt
gaagcatcctcacttgggccttccttcttgttaaacttcttatggcctgt
gggttgtatcataggtattctgtactttttggttagtatccagttattag
tgagtacataccacacatgtccttttgggtctgggttacctcactcagga
tattttctagtttcatccacttgcctgcaaattcttgatgtcctcatctt
taatagcagaattggtattccattgcgtaatgaaccacattttctgtatt
cattcttggatgagggacatctgggtgcttccagtttctggctattatga
ataaggtggcctgtgaccataaatggagcatgtgtctctgtgatgtgggg
ggagccatccctttggggttattgcttcagagcagaatagctggatcttg
caagtaggactattctatcttcttaaggaagccacagaatgaataccaga
tgtatgtatcacgtttggccaattctccacatctccatttccatggtgaa
gga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_4023529_4024604
seq2: B6Ng01-350I11.b_49_1119

seq1  GAATTCACTAGATGTTTTAGCCTCTGGAGATCTTCAGAAAGATTATTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAGATGTTTTAGCCTCTGGAGATCTTCAGAAAGATTATTTGG  50

seq1  TAGTGAGGTTCTTAACCATTTAAGCCCCTTGAGTTATTTCAATCTGTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAGGTTCTTAACCATTTAAGCCCCTTGAGTTATTTCAATCTGTCAT  100

seq1  ATTGTGAAGGAAATTCCTGGGAACTTTTTTTGTTTCCTCTTTCAAATTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGAAGGAAATTCCTGGGAACTTTTTTTGTTTCCTCTTTCAAATTAC  150

seq1  TTGACTCTCCTTGGTTCACAATGTGAACTCCAGATGCAGGTTTCTTTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTCTCCTTGGTTCACAATGTGAACTCCAGATGCAGGTTTCTTTTGT  200

seq1  TCATAATTCCCAATCCATTCCTTCTAATCCTACCCACCACCATGCCTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAATTCCCAATCCATTCCTTCTAATCCTACCCACCACCATGCCTTCC  250

seq1  TCCTCCATTTTTCTTTAGAAAAGGGCAGGACTTCAATGGATATTAACCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCATTTTTCTTTAGAAAAGGGCAGGACTTCAATGGATATTAACCAA  300

seq1  ATATGTCATATAAAGTTGTAGTAAGACTAGACACCTCCCCTCATATTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTCATATAAAGTTGTAGTAAGACTAGACACCTCCCCTCATATTAAA  350

seq1  TCTAGAAAAGGCAAGACTGTAAGAGAGAAAAGGGGTCCAAAAAGCAGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAAAAGGCAAGACTGTAAGAGAGAAAAGGGGTCCAAAAAGCAGGCT  400

seq1  AAAGAGTCAAACACACACACTGTTAGCAGTCCCACAAGAAGACCAAGCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTCAAACACACACACTGTTAGCAGTCCCACAAGAAGACCAAGCTA  450

seq1  TACAAATGTAACATGTATTCAGAGAACCTACATCAGACCCATGAAGGGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATGTAACATGTATTCAGAGAACCTACATCAGACCCATGAAGGGCC  500

seq1  TTTGGTTATTGATCCAGTCTCTGTGAGGATCTATGAGCACAGAATAGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTATTGATCCAGTCTCTGTGAGGATCTATGAGCACAGAATAGTTG  550

seq1  ATTCTGTGGTTTTTCTGTGGTGTCTTTGATCCCTCTGGTTCCTATAATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTGGTTTTTCTGTGGTGTCTTTGATCCCTCTGGTTCCTATAATTC  600

seq1  TCATTTTCAGCAAGATTCCCTGAGCTCCTCCTAATGTTTGGCTGTGTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTCAGCAAGATTCCCTGAGCTCCTCCTAATGTTTGGCTGTGTGTT  650

seq1  TCTGCATGTGTTTACATTACTTGCTAGATGAAGCCTCTCTGGTGGCAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATGTGTTTACATTACTTGCTAGATGAAGCCTCTCTGGTGGCAATT  700

seq1  GAGTTATGAAATAATCTATGAGTATGACAGAATATTATTAGACATCATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTATGAAATAATCTATGAGTATGACAGAATATTATTAGACATCATTT  750

seq1  CATTAACACATCTCTTTGCTAGACATGTGAGGTCCTATCCCAAGTCTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAACACATCTCTTTGCTAGACATGTGAGGTCCTATCCCAAGTCTCTG  800

seq1  GGCTATTCAGCCTCTGGTTTCTGATTCTTTAGGCAGTGTCAAGGGTGGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATTCAGCCTCTGGTTTCTGATTCTTTAGGCAGTGTCAAGGGTGGAC  850

seq1  TTGACCCAGCACATTATACTGGCAGAACAAATTGTAGGAAGAAC-GGTTG  899
      |||||||||||||||||||||||||||| ||||||||||||||| |||||
seq2  TTGACCCAGCACATTATACTGGCAGAAC-AATTGTAGGAAGAACGGGTTG  899

seq1  TGGCTGGG-TTGGTGTCCAATCCC-TCCAATAGAAGTCT-GGCCAGTTAA  946
      |||||||| ||||||||||||||| |||||||||||||| ||||||||||
seq2  TGGCTGGGTTTGGTGTCCAATCCCTTCCAATAGAAGTCTGGGCCAGTTAA  949

seq1  GGCTTTACATCCCCCATTGCTAAGTATCTTAGCTAGGGTCACCCTAATCA  996
      ||||||||||||||||||||| |||||| |||||| ||||||||| ||||
seq2  GGCTTTACATCCCCCATTGCT-AGTATC-TAGCTA-GGTCACCCT-ATCA  995

seq1  ATTTCTGGAAGGTCCCAGTTCAATAAATCTTAAAGAAAGCAGTATCCCCA  1046
       ||  ||||  || |||| || |||||||||||||||||||||||||| |
seq2  TTTCTTGGA--GTTCCAG-TCCATAAATCTTAAAGAAAGCAGTATCCCAA  1042

seq1  TCTAAGGAGACATGGACA-GTCTACTCAGAC  1076
      ||||| ||||||| |||| ||||||||||||
seq2  TCTAA-GAGACAT-GACAGGTCTACTCAGAC  1071