Query= MSMg01no045_b07.b1 MSMg01no045_b07.b1 CHROMAT_FILE:
MSMg01no045_b07.b1 PHD_FILE: MSMg01no045_b07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:04:56 2005
(653 letters)
>mm_chr8_58680493_58681547
Length = 1055
Score = 1166 bits (603), Expect = 0.0
Identities = 639/651 (98%), Gaps = 2/651 (0%)
Strand = Plus / Plus
Query: 4 ggaattcattgctgtgacaagcgctcactacttgagtggaggcgtgaagcctttggtaaa 63
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcattgctgtgagaagtgctcactacttgagtggaggcgtgaagcctttggtaaa 263
Query: 64 gacagaacacttaagaccgaatcgccaccagaaggattcactgtcgaatattgatatgat 123
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 264 gacagaacacttaagaccaaatcaccaccagaaggattcactgtcgaatattgatatgat 323
Query: 124 gttatttaaatagcaacctgaacttta-ggggggtgttttctggaaa-gataagtttcac 181
|||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 324 gttagttaaatagcaacctgaactttagggggggtgttttctggaaatgataagtttcac 383
Query: 182 aattatgctttgctttcctgtgggattacagctgcctggggagtaaatttagtataaaca 241
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 384 aattatgctttgctttcctgtgggattacagctgcctggggagtaaatttaatataaaca 443
Query: 242 tgagaacactacccaaatatgtgttgctcctttaaaataatagtgaaaatatacataaat 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgagaacactacccaaatatgtgttgctcctttaaaataatagtgaaaatatacataaat 503
Query: 302 gctgtattgttgatgataggcacattttaaaaatactcagaaaattttttacagaaaact 361
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 504 gctgtattgttgatgataggcacatttttaaaatactcagaaaattttttacagaaaact 563
Query: 362 aatttatttatttttgatgtgatgatagatcagaagggtaaatgttacttagctgtcaga 421
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 564 aatttgtttatttttgatgtgataatagatcagaagggtaaatgttacttagctgtcaga 623
Query: 422 aatatacaagtctggtaattagagtaaagtcagtcttctttaagcatgatgggctgattt 481
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aatataccagtctggtaattagagtaaagtcagtcttctttaagcatgatgggctgattt 683
Query: 482 ggagtttccagctctttctgtgtaaataagtcaagatgtataataatgcactgttctcag 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ggagtttccagctctttctgtgtaaataagtcaagatgtataataatgcactgttctcag 743
Query: 542 tgaaaatgcccctctgggacaatgtctgctccatctctgtctttcacacagttcaaaacc 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tgaaaatgcccctctgggacaatgtctgctccatctctgtctttcacacagttcaaaacc 803
Query: 602 cggatgcaacattttcctgccagaagttaatgctgacttccatttattctc 652
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 cggatgcaacattttcctgccagaagttaatgctgacttccatttattctc 854
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1055
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1045
Effective search space: 671935
Effective search space used: 671935
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no045_b07.g1 MSMg01no045_b07.g1 CHROMAT_FILE:
MSMg01no045_b07.g1 PHD_FILE: MSMg01no045_b07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:04:56 2005
(622 letters)
>mm_chr8_58821750_58822770
Length = 1021
Score = 1096 bits (567), Expect = 0.0
Identities = 573/575 (99%), Gaps = 1/575 (0%)
Strand = Plus / Minus
Query: 47 gtgtgtgtgtgtgctgctaaggactgagctgagacctgtacccaaaatagagaaactctc 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 gtgtgtgtgtgtgctgctaaggactgagctgagacctgtacccaaaatagagaaactctc 772
Query: 107 taccactgaactccttacccagccctagtccagagacttggcagattgcctatattttcc 166
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 771 taccactgaactccttacccagccctagtccagagacttggcagagtgcctatattttcc 712
Query: 167 tgtgcctgataaaaatacatctgttctggtttcttgaagacacacacggaggtagttaca 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 tgtgcctgataaaaatacatctgttctggtttcttgaagacacacacggaggtagttaca 652
Query: 227 atgggacattctgttagtatttgcttagagccaagcattgaaattgttattccaaaatga 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 atgggacattctgttagtatttgcttagagccaagcattgaaattgttattccaaaatga 592
Query: 287 cctctgattttagaaatgtagcctgagggaacctaaaacctcggtgtctacaagcccaag 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 cctctgattttagaaatgtagcctgagggaacctaaaacctcggtgtctacaagcccaag 532
Query: 347 cttgctcttcaggttcttgttatctggaaaggctgtagacaaggagaaactttgcaacgc 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 cttgctcttcaggttcttgttatctggaaaggctgtagacaaggagaaactttgcaacgc 472
Query: 407 tagtcacagagagcatcttgcatttccagtgtgggtctgaacgcccccgacaggtaaaac 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 tagtcacagagagcatcttgcatttccagtgtgggtctgaacgcccccgacaggtaaaac 412
Query: 467 ctgtctaatgaagaactaattcaagttatgtcaggtaaagcctcagagatccataaagtg 526
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 411 ctgtctaatgaagaactaattcaag-tatgtcaggtaaagcctcagagatccataaagtg 353
Query: 527 aagttagtgtcattcaggggtattttcttgtgtactaacatcttttacatgcactggggg 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 aagttagtgtcattcaggggtattttcttgtgtactaacatcttttacatgcactggggg 293
Query: 587 taggttagaactataaaaatctcaactctgagaat 621
|||||||||||||||||||||||||||||||||||
Sbjct: 292 taggttagaactataaaaatctcaactctgagaat 258
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1021
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1011
Effective search space: 618732
Effective search space used: 618732
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
