BAC Information

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BAC

Clone NameMSMg01-045G16
Chromosome8 (Build37)
Map Location 58,417,807 - 58,418,206
singlet/doubletsinglet
Overlap genenone
Upstream geneGm392, LOC100040212, Gm1153, EG664808, EG664818, EG664834, EG664859, EG664876, LOC100040356, LOC664916, Adam29
Downstream geneGlra3, LOC664812, Hpgd, LOC664948, BC088983, Fbxo8, LOC100040431, EG624433
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-045G16.T7 (MSMg01no045_g16.b1)MSMg01-045G16.TJ (MSMg01no045_g16.g1)
ACCAG276055AG276056
length653746
length of high quality
(start - end)
389 (54 - 442)429 (125 - 553)
definitionCHROMAT_FILE: MSMg01no045_g16.b1 PHD_FILE: MSMg01no045_g16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:22 2005CHROMAT_FILE: MSMg01no045_g16.g1 PHD_FILE: MSMg01no045_g16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAATAAAGATCCGCGAATCCCAATTTCCCAGACCTGTTTTTCTGAGTTT
GTTGTGAGCATCTGTGATTTACTTTTAAGCAAGTTAACATTTTAAAAATA
TTTATTTATTTTCTGAGATTATAATTATTTCATTTTTCTCCTTTCTTTCC
TCCTCAACACTTCCATATAAACCTTTGTTCTTTTTCAAATCCATGGTCTA
TCTCTTTGTTAATTGCTGTTATGTTTATGCATGTATACATGTATTCATCT
TGGACAGAATCTCATTAAGACATCGGCTGTTCACAAAAGTTCTAGACCTA
TAGGTCACAACCCCTTATACGGCCAGAAAACACACATATTTACATTATGA
TTCATAACCATAGGGTAAAAGTATGAGCTCACTTCTAGGAATTGAACACT
CACCAAACCATGACCTTGAAAACTAGCAAATCCCCGAGCTTTCCTAAAGA
TCAAGTCACAAAATCTCATTAATTCTAGGCCACCCAGGATAGCACCCACA
CTGCTCAAAGATTTTCAAAGAAAATAGATAAAATAAGAACACCTACTCAT
TTCTCTTTCTTGCCCAAATATAACAGATACAGCCACTTTTCTTGTGTCTT
TCTCAATAAATCTCATGTGCACTTTGTTATGCTCTGTGACTTTTTCATAT
TCG
NNNNNNNNNNNNNNNNNNNNNNCCCCCCCCNNCNNNNNNNNNNNNTTTAT
TCNNNNCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTTCCCGCGGAATTCGTTTCTATATTTGTAGAAGAC
ATGTTTTATGTGACTCTTTTCTGATTTAAATCATCAACTTACAGAAGACT
CATAAGAAACACATCAGTTTTATACCTCCTAGAAGGTTCATAATACTCTT
TTTTGTATCTATATTACATTTGTGTGTACATGTATGAATGCACACATGGA
TGATTGCATGGACTAATGTATGTCATGTTTGAAGGTCATAAGATCTGTGG
ACAGGCAATTCTGTCATTTCACATTGTGAGTTGGAGGGATCACACTTAGG
TCTCTCGCCTGGCAGCAAATGCCTTTACCTGCTGCGACATCTCACTGCCT
CTGAGAAGATATCCTCTTTGAAGAACCTGTTGAAAACTTACACTACACAG
ATGCTTCTCAGTTACTTATTCACTGATTAAAAATTACAGCGCATTGCCTT
TTATGGCATCCCTGGGAGGGGAGCATCTTGGTTCAGTAGAGGCTCAATGA
CCCATGGTATGGGCATTATATGTTGGTGAGGAGTCGGTGGTTGTTGTGAG
TGGGAGAGCAACCTTCTAGAGGTATGTGGAGGGGAAGGAGGGAAAACAGG
GGCTTGCAAATGCAACATTTGGCATGTATCCCTTCATCTCCTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no045_g16.g1 MSMg01no045_g16.g1 CHROMAT_FILE:
MSMg01no045_g16.g1 PHD_FILE: MSMg01no045_g16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:22 2005
         (429 letters)



>mm_chr8_58417807_58418636
          Length = 830

 Score =  700 bits (362), Expect = 0.0
 Identities = 390/400 (97%), Gaps = 4/400 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattcgtttctatatttgtagaagacatgttttatgtgactcttttctgatttaaatcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 aattcgtttctatatttgtagaagacatgttttatgtgactcttttctgatttaaatcat 341

                                                                       
Query: 61  caacttacagaagactcataagaaacacatcagttttatacctcctagaaggttcataat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 caacttacagaagactcataagaaacacatcagttttatacctcctagaaggttcataat 281

                                                                       
Query: 121 ac-tcttttttgtatctatattacatttgtgtgtacatgtatgaatgcacacatggatga 179
            | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 gctttttttttgtatctatattacatttgtgtgtacatgtatgaatgcacacatggatga 221

                                                                       
Query: 180 ttgcatggactaatgtatgtcatgtttgaaggtcataagat--c-tgtggacaggcaatt 236
           ||||||||||||||||||||||||||||||||| |||||||  | |||||||||||||||
Sbjct: 220 ttgcatggactaatgtatgtcatgtttgaaggttataagataacgtgtggacaggcaatt 161

                                                                       
Query: 237 ctgtcatttcacattgtgagttggagggatcacacttaggtctctcgcctggcagcaaat 296
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 ctgtcatttcacattgcgagttggagggatcacacttaggtctctcgcctggcagcaaat 101

                                                                       
Query: 297 gcctttacctgctgcgacatctcactgcctctgagaagatatcctctttgaagaacctgt 356
            | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 acatttacctgctgcgacatctcactgcctctgagaagatatcctctttgaagaacctgt 41

                                                   
Query: 357 tgaaaacttacactacacagatgcttctcagttacttatt 396
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 40  tgaaaacttacactacacagatgcttctcagttacttatt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 830
Length adjustment: 9
Effective length of query: 420
Effective length of database: 821
Effective search space:   344820
Effective search space used:   344820
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)