Query= MSMg01no045_m21.b1 MSMg01no045_m21.b1 CHROMAT_FILE:
MSMg01no045_m21.b1 PHD_FILE: MSMg01no045_m21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:51 2005
(563 letters)
>mm_chr8_24988934_24989895
Length = 962
Score = 1073 bits (555), Expect = 0.0
Identities = 561/563 (99%), Gaps = 1/563 (0%)
Strand = Plus / Minus
Query: 1 atgctatataattgaccaaggctttcaggaactccttaccacagagatttcatctttccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 atgctatataattgaccaaggctttcaggaactccttaccacagagatttcatctttccc 703
Query: 61 tcagagcatagagcttcactgagacttcccttgactatgtaacatcattagcatagagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 tcagagcatagagcttcactgagacttcccttgactatgtaacatcattagcatagagca 643
Query: 121 catcgtgcagaattgaatgtcagttctttgagaaaatatattatcctatacattgttgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 catcgtgcagaattgaatgtcagttctttgagaaaatatattatcctatacattgttgtg 583
Query: 181 tggttattgaaaaaaaatacactgaacattaaattaaatcggaacatatttgcattaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 tggttattgaaaaaaaatacactgaacattaaattaaatcggaacatatttgcattaaaa 523
Query: 241 acaagcagtttagattttggttttaaatgggagagacatgcgattgtcagttgcaaaaaa 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 522 acaagcagtttagattttggttttaaatgggagagacatgcgattgtcagttgc-aaaaa 464
Query: 301 tccttctcatttttaacacaagggtaatatttacctgtccaatcaagatggaggaattgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tccttctcatttttaacacaagggtaatatttacctgtccaatcaagatggaggaattgc 404
Query: 361 aagtggagtcaggctgatgctgagaatggagggtagcgtggggactatgacctagaaatc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 aagtggagtcaggctgatgctgagaatggagggtagcgtggggactatgacctagaaatc 344
Query: 421 cgggatctgcagtgtccttggattcaggcagtacaacaccagaatctaagaatgaggacg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 cgggatctgcagtgtccttggattcaggcagtacaacaccagaatctaagaatgaggacg 284
Query: 481 atcaggtgcaacatccagatggagcaggcacacctggacaaagggctctatgtgtttggt 540
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 atcaggtgcaacatccagacggagcaggcacacctggacaaagggctctatgtgtttggt 224
Query: 541 gtgtcaacaactgtgacagggtg 563
|||||||||||||||||||||||
Sbjct: 223 gtgtcaacaactgtgacagggtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 962
Length adjustment: 10
Effective length of query: 553
Effective length of database: 952
Effective search space: 526456
Effective search space used: 526456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no045_m21.g1 MSMg01no045_m21.g1 CHROMAT_FILE:
MSMg01no045_m21.g1 PHD_FILE: MSMg01no045_m21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:51 2005
(512 letters)
>mm_chr8_24879593_24880504
Length = 912
Score = 955 bits (494), Expect = 0.0
Identities = 503/506 (99%)
Strand = Plus / Plus
Query: 1 agattgaatctgataaggaaactcgaggggatgctgtgaggaatattgcaagcttgtaca 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 agattgaatctgataaggaaactcgaggggatgctgtgaggaatattgcaagcttgcaca 260
Query: 61 tcctggtcctttgacctcaccggcctgggcagcagctgtgtgtagcagggtgggagggag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcctggtcctttgacctcaccggcctgggcagcagctgtgtgtagcagggtgggagggag 320
Query: 121 ggagacgcctgggcaattagtacagtaaagtaacacttaagtctgcaattctgaaagttt 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggagacgcctgggtaattagtacagtaaagtaacacttaagtctgcaattctgaaagttt 380
Query: 181 tcctttcccctctcttcttcgtttaactaaatgccgccaagacagtgataaaaggctggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcctttcccctctcttcttcgtttaactaaatgccgccaagacagtgataaaaggctggg 440
Query: 241 tggatttccacagtcccggtgaacagagtcagccggagaagtgctgactcaagcattaac 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 tggatttccacagtcccggtgaacagagtcagccggagaaatgctgactcaagcattaac 500
Query: 301 tagttccctcccccaagtggttttctcctcctttgctaaatagttcctgaaaaatgcatc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagttccctcccccaagtggttttctcctcctttgctaaatagttcctgaaaaatgcatc 560
Query: 361 tcaaaatggcacatctgagatccttgctcattcttcatcatggatttgagtaaatcctac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcaaaatggcacatctgagatccttgctcattcttcatcatggatttgagtaaatcctac 620
Query: 421 agagtccgtttatccaggagggtagtgggtgaggacaaggcgggggtgaatggtggtggg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agagtccgtttatccaggagggtagtgggtgaggacaaggcgggggtgaatggtggtggg 680
Query: 481 gtagcacttgtgtgaaggtcagctgt 506
||||||||||||||||||||||||||
Sbjct: 681 gtagcacttgtgtgaaggtcagctgt 706
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space: 452804
Effective search space used: 452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
