BAC Information

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BAC

Clone NameMSMg01-045P10
Chromosome8 (Build37)
Map Location 32,975,311 - 33,142,255
singlet/doubletdoublet
Overlap geneNrg1
Upstream geneLOC547008, Dusp26, Rnf122, BC019943, Rbm13, Fut10, LOC666330, LOC666568, 7420700N18Rik, LOC100041329, EG330731, LOC100041340
Downstream gene2010007E15Rik, EG666589, EG546052, LOC100042715, LOC628408
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-045P10.T7 (MSMg01no045_p10.b1)MSMg01-045P10.TJ (MSMg01no045_p10.g1)
ACCAG276460AG276461
length764773
length of high quality
(start - end)
456 (129 - 584)297 (143 - 439)
definitionCHROMAT_FILE: MSMg01no045_p10.b1 PHD_FILE: MSMg01no045_p10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:02 2005CHROMAT_FILE: MSMg01no045_p10.g1 PHD_FILE: MSMg01no045_p10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,975,311 - 32,975,766)(33,141,959 - 33,142,255)
sequence
GGGGGGGGGGGNNNGGGGGGGGGGTTTTTGTGTGGGGTGGGGGTTATTTT
TTNNCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAA
TCCGCGGAATTCCATCCAAGGCACCTCATGCCAAGGCTCATCATGTATCC
ATTAATGGATTCTGGCTCACGATAGTTATTTCATAACTACATCCATGACC
TTGTAGTAAAAACAAGCAAATGACAGAAAAAGCGGAGCTCTTTTTCCTCC
CCCACGTCTATGTAGATCATGTTCTTCCATCTCAGCCAGGGATTTATAGT
TAACATCTCCTTGGTTTCTAAACCATATTTTCGGAGAACGAGACTTAAAG
TCTATTACTTCTAGGTTTCACACTCTGAATAGAAAGCAGGAGGCTAAATG
TCTGTCAAATCCATACTAGTTCAGTCTTGACTCCGAGAAACTGCTTGGAT
CCCATTATGGACCACTCTGCTCTTGCAGAATAGAACACTCAAGCTTTCTG
TTCAGCTTTCTTTAACTGATCCTGAGTAGCCGAGTTTAAATTATGAAAGG
GACTGACCAGCTGGAATGTTATAATGGATTCTATTCGCCCTCCCAACAAA
TTATCCTCATCTTCCTTTTAAAAACGCTTTTAAGAAAATTCAATTTTTCA
TTTATTGACCATTTCCAGGGTATATAAAAATTACCCCCTATTATTTCCTT
TACGAAACCTCTGTTACATAAATGTCCGTAACCTTTAATTATATGGACAA
ATATTTAATATGCN
TCCCTTTNNNNNNNNNNNNNCCNCCCCCCCCNCCCNNCCCCCCCCNCCCC
TCCCCCATTTCTTTNCCCCGATGATAGTXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTATGCG
CTGATGTCCTAAGATCTTCAGTACTGTGGTGACTGTTGGCCAGAGGCCCC
CCTCATGCCCTGGCTACATGACCGTCTCACTTAGCATCTTGTTTAATCGA
AGAAGCAATGGAGAAAAATCTGCTAACAAAATGAAAGGCACTCTATGACA
TAAGCCCTGCAATGACATCTCATCCCTTTGCCTCGTCCTATGTATTACAA
AGCAATTGGCTAGGCAAGACGACACACAAGATAAGGATCTTCCACGAGGG
ACAAATACTAGGAGGCAGGCTGTGGGCTGAAGTGCAATGTAGTGGCTCAG
AGTCATAGGTAATGAACACATGTGCACAGCTTTCTATAGTTAGCTGGCGT
CTCCACTGTCTCACATCAAATCTTTACCCCCTTTGCTCCAGTAATGATGG
AGGTCAGTCAAGATGCCCTTCATCCACAAGCTAATGACGTCTCCCAAGGT
TTTGCCATATTTCAAATTAACACAAGCAATTGGCATCTGTTTCCCCCCTA
TATGGGCCTGTGCCCCCTCCCACTTTTGTGCCTGTTCGGTTTCACAAACC
CTTTTGGCGCTTCCTTCTTTTCCTCACGTTATAAAGCTACTTGGTTCAAG
GGTTGCCCCTACCCCACATTTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no045_p10.b1 MSMg01no045_p10.b1 CHROMAT_FILE:
MSMg01no045_p10.b1 PHD_FILE: MSMg01no045_p10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:02 2005
         (456 letters)



>mm_chr8_32975111_32975966
          Length = 856

 Score =  874 bits (452), Expect = 0.0
 Identities = 455/456 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgccaaggctcatcatgtatccattaatggattctggctcacgatagttatttcataact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgccaaggctcatcatgtatccattaatggattctggctcacgatagttatttcataact 260

                                                                       
Query: 61  acatccatgaccttgtagtaaaaacaagcaaatgacagaaaaagcggagctctttttcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acatccatgaccttgtagtaaaaacaagcaaatgacagaaaaagcggagctctttttcct 320

                                                                       
Query: 121 cccccacgtctatgtagatcatgttcttccatctcagccagggatttatagttaacatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccccacgtctatgtagatcatgttcttccatctcagccagggatttatagttaacatct 380

                                                                       
Query: 181 ccttggtttctaaaccatattttcggagaacgagacttaaagtctattacttctaggttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccttggtttctaaaccatattttcggagaacgagacttaaagtctattacttctaggttt 440

                                                                       
Query: 241 cacactctgaatagaaagcaggaggctaaatgtctgtcaaatccatactagttcagtctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacactctgaatagaaagcaggaggctaaatgtctgtcaaatccatactagttcagtctt 500

                                                                       
Query: 301 gactccgagaaactgcttggatcccattatggaccactctgctcttgcagaatagaacac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gactccgagaaactgcttggatcccattatggaccactctgctcttgcagaatagaacac 560

                                                                       
Query: 361 tcaagctttctgttcagctttctttaactgatcctgagtagccgagtttaaattatgaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 561 tcaagctttctgttcagctttctttaactgatcctgagtagccgagtttaaattaggaaa 620

                                               
Query: 421 gggactgaccagctggaatgttataatggattctat 456
           ||||||||||||||||||||||||||||||||||||
Sbjct: 621 gggactgaccagctggaatgttataatggattctat 656


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no045_p10.g1 MSMg01no045_p10.g1 CHROMAT_FILE:
MSMg01no045_p10.g1 PHD_FILE: MSMg01no045_p10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:03 2005
         (297 letters)



>mm_chr8_33141673_33142369
          Length = 697

 Score =  574 bits (297), Expect = e-168
 Identities = 297/297 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttatgcgctgatgtcctaagatcttcagtactgtggtgactgttggccagaggcccccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 cttatgcgctgatgtcctaagatcttcagtactgtggtgactgttggccagaggcccccc 524

                                                                       
Query: 61  tcatgccctggctacatgaccgtctcacttagcatcttgtttaatcgaagaagcaatgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 tcatgccctggctacatgaccgtctcacttagcatcttgtttaatcgaagaagcaatgga 464

                                                                       
Query: 121 gaaaaatctgctaacaaaatgaaaggcactctatgacataagccctgcaatgacatctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 gaaaaatctgctaacaaaatgaaaggcactctatgacataagccctgcaatgacatctca 404

                                                                       
Query: 181 tccctttgcctcgtcctatgtattacaaagcaattggctaggcaagacgacacacaagat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tccctttgcctcgtcctatgtattacaaagcaattggctaggcaagacgacacacaagat 344

                                                                    
Query: 241 aaggatcttccacgagggacaaatactaggaggcaggctgtgggctgaagtgcaatg 297
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 aaggatcttccacgagggacaaatactaggaggcaggctgtgggctgaagtgcaatg 287


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space:   198144
Effective search space used:   198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)