BAC Information

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BAC

Clone NameMSMg01-046N02
Chromosome8 (Build37)
Map Location 76,695,795 - 76,695,989
singlet/doubletsinglet
Overlap genenone
Upstream geneLarge, LOC100039001, LOC666134, Crry-ps, LOC666146
Downstream geneIsx, Hmgb2l1, Tom1, LOC100039134, Hmox1, Mcm5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-046N02.T7 (MSMg01no046_n02.b1)MSMg01-046N02.TJ (MSMg01no046_n02.g1)
ACCAG277102AG277103
length767710
length of high quality
(start - end)
---202 (75 - 276)
definitionCHROMAT_FILE: MSMg01no046_n02.b1 PHD_FILE: MSMg01no046_n02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:03 2005CHROMAT_FILE: MSMg01no046_n02.g1 PHD_FILE: MSMg01no046_n02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GAAGGATTGGTCGGTGTGTTTTTTTTTCTTTTCCCCTGGCTTTGTCGTTC
CCCCCCTTTTTCTTTCTTTATCTTTCTGCTTTTCCTATTTTTTTTCCTTT
CCCCTTTTTCTTTCTCCACTTTTCCGCCCCCCTCTTTCCGCCGTGGCCAC
TGCCCTCGCCGTGCCCGTCGGGTGTGGGGGCGGGCCGGTCGTCGCGCCAC
TTGTTCTCCTCTCTTTTTTTTTCTTCGCTCCCCCCTTTCCCCCCCGGGGG
GAGGGGGGGGGGGGGGGCCCNNNNTTCTTTNCNNNNTTCATGACGCGAGA
GGGGGGANNNTGGGGGGGCGAGGGGGGGGGTGGACCTGTGGACGGGGGGG
TTTTNTCNATACTGGGGTTTCTCCACACGTAGCTCCAGGGAGGGCGGCCG
GGGCTCTAATAAATTTTGCGGCCGGCCTAAATACGAAAACTCACCTATTA
ATTCCCCGCAAGAAAATCCCGNCGGGGAAAAATTTCCTTTCCAAAATTTT
TTCTTTTTCCCCTTTTCCAGGGAAGAGAAACTTTTTGTGGAAAAACCTTT
TTTCCCTTGTTGCCGGCCCCCTATAAAAGAGGGGGGGGGAGCCCCCCTTT
TTTTTCCCCACCCCCCCTGTGGGGGGGGGCCTTTGGTCGCGGGGGTGGGT
TTTAATTAAAAAGGGGGGGGNAACCCCAAAAAAAAAAAAAGGGGGCCGCA
GGGGAAAAAATTTTTTTTGTTGGAGGAAGCNGGGGAAAAAATTTTTGGGG
GAGAGGGGGGGCAACAN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAATGACAATAAGGATTGAGATGAGG
AACAGAGATGACTTCTAACGCATCAGCATTAGCTCAGAACTCCACCACCT
GGAGCTCTATCAAAGCCAAGACTCAGTGCAAAGGCCTGCTCAAAGGACGG
TCTGACAACTGTGTGCTGAATACTTCATTTCTAAGCCCAGCTTTTTTTTT
TAGGGGGGGGGTGTTGTTTTGCCCNCNTCTCCCCTTCCTTCTTCCTTCTC
TTTCTCCCTTCTTTCCCCCTCTCCTTTTCCTTTTCCATCCTCTCTCTTTT
TCCTCCTTCCACCCCTTTTCCTGCCCTTCCCCTTTCCTGCATATTTACAG
CACCCTTTGCCTCTCACTCTATCTTTTATTTGATCGTCTTTTTCTACCCA
CCTTCATCCCCTTTCCTTCTTTCTCACACCTGCCCCGTTGACGTACCCAT
TTTCCCTCCCATCACCCGCTTTTCCCCCCCTACTTTTGACTCTCCCTTCA
TTCCACTGCTCTATCCATTTTTTTTTATTTCCCCCACCCCTCCACCTTTC
CCCCCCATATTTCTTATTATTTTCGCATTTTTCTCTCCCTCACCCCCCCC
TTAGAGGCAACCTATTAAAATTATTTTATAATATTTTTCCAAAACCAACG
TTCGACCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no046_n02.g1 MSMg01no046_n02.g1 CHROMAT_FILE:
MSMg01no046_n02.g1 PHD_FILE: MSMg01no046_n02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:03 2005
         (202 letters)



>mm_chr8_76695595_76696194
          Length = 600

 Score =  350 bits (181), Expect = e-101
 Identities = 193/197 (97%), Gaps = 2/197 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   caatgacaataaggattgagatgaggaacagagatgacttctaacgcatcagcattagct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 caatgacaataaggattgagatgaggaacagagatgacttctaacgcatcagcattagct 336

                                                                       
Query: 61  cagaactccaccacctggagctctatcaaagccaagactcagtgcaaaggcctgctcaaa 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 335 cagaactccaccacctggagctctatcaaacccaagactcagtgcaaaggcctgctcaaa 276

                                                                       
Query: 121 ggacggtctgacaactgtgtgctgaatacttcatttctaagcccagcttttttttttagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct: 275 ggacggtctgacaactgtgtgctgaatacttcatttctaagcccagc-ttttttttta-g 218

                            
Query: 181 gggggggtgttgttttg 197
           || ||||||||||||||
Sbjct: 217 ggtggggtgttgttttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 202
Length of database: 600
Length adjustment: 8
Effective length of query: 194
Effective length of database: 592
Effective search space:   114848
Effective search space used:   114848
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)