Query= MSMg01no047_h22.b1 MSMg01no047_h22.b1 CHROMAT_FILE:
MSMg01no047_h22.b1 PHD_FILE: MSMg01no047_h22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:51 2005
(480 letters)
>mm_chr8_45962609_45963488
Length = 880
Score = 851 bits (440), Expect = 0.0
Identities = 469/486 (96%), Gaps = 14/486 (2%)
Strand = Plus / Minus
Query: 5 gaattcttttcattccctctgagtctagatgtgtgtccaagacttatgaaaggaaacgga 64
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 gaattcttttcactccctctgagtctagatgtgtgtccaagacttatgaaaggaaacgga 799
Query: 65 ctcattggaaccacgtggacgtgtgtttcttgctagagttggaatctgaaggctgtgtgt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 ctcattggaaccacgtggacgtgtgtttcttgctagagttggaatctgaaggctgtgtgt 739
Query: 125 gtgtgtctc------tgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtctgtgtgtcc 178
||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 gtgtgtctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtctgtgtgtcc 679
Query: 179 ccatccatcctggcctttccctggaacttctgctcacacagcctatacatttcttagggt 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ccatccatcctggcctttccctggaacttctgctcacacagcctatacatttcttagggt 619
Query: 239 gtactgcttcttgaattagtgttttggaaatataatgctcatacagatgaatcttattct 298
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 atactgcttcttgaattagtgttttggaaatataatgctcatacagatgaatcttattct 559
Query: 299 ggacctaccaag----gttttatgctctcacacgtggtttgttggctactgggacaggcc 354
|||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ggacctaccaaggggcg----atgctctcacacgtggtttgttggctactgggacaggcc 503
Query: 355 cagggatgagcatcctcttcagccttgtgaagccctctttgaagtcagtgggcactatgc 414
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 502 cagggatgagcatcctcttcagccttgggaagccctctttgaagtcagtgggcactatgc 443
Query: 415 ctgttttaggtggaaagacagaaaaatgtttgccagctacctttagaagagttggttaca 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ctgttttaggtggaaagacagaaaaatgtttgccagctacctttagaagagttggttaca 383
Query: 475 cttctc 480
||||||
Sbjct: 382 cttctc 377
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space: 408900
Effective search space used: 408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no047_h22.g1 MSMg01no047_h22.g1 CHROMAT_FILE:
MSMg01no047_h22.g1 PHD_FILE: MSMg01no047_h22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:51 2005
(284 letters)
>mm_chr8_45789943_45790626
Length = 684
Score = 526 bits (272), Expect = e-154
Identities = 281/284 (98%)
Strand = Plus / Plus
Query: 1 agaagggactccactcgaaaggactccactcggagaactttatatgctccagtctagcac 60
|||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||
Sbjct: 201 agaagggactccactcgaaaggactccattcggagaactttaaatgctacagtctagcac 260
Query: 61 ccagcaactagaaacagaatgggagctcagattcttattttttattaaattaaattttat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccagcaactagaaacagaatgggagctcagattcttattttttattaaattaaattttat 320
Query: 121 tttatgaattaaaatatccagttcaaatcatgatgtgttgtggcagctgatgaatttcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttatgaattaaaatatccagttcaaatcatgatgtgttgtggcagctgatgaatttcct 380
Query: 181 cccacagaacagattatgtggaaaatccaatcgactttggagcgcgtccccattgtgggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccacagaacagattatgtggaaaatccaatcgactttggagcgcgtccccattgtgggc 440
Query: 241 acaattacgattgcattcagggtgtgctttgtccacccaggtta 284
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaattacgattgcattcagggtgtgctttgtccacccaggtta 484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space: 185625
Effective search space used: 185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
