CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATCAAATGCAAAGTAATGTAGCTTGTGAGATGCTGTAGCATATAA
ATGTGAGGAACAAAGATTGAGGTTAATAAAAGGAGTTGATAACAGTACAT
TTTGAAATTAAGATATATTTTCTCATAGCAAGCTTGGAGGAGATTCCAGA
TAGAAAATGTGATTCTATTCGGTCTGATGTAGAAAAGAGGGTTGATGGGT
CATGGAATAACTGATTTTATTCCATAAAAAAGCGATTCTGTTCAGTCAAA
TAAAGGACAGAGTGTGGATGGATCATGGGATAATTAGCTTTAATTTGCAA
CTTGATACAACCTGGGATTATCTGGGAAAAGGGTTTCAATGAAGAGGTTG
TCCATGTTGGGTTGGTAGACATGTCTAAAGGGAGACTGTTTTAATTATGC
CAGTTGATATGGGAGGTGCCAGCCCCCTGTGGGAGGCACCATTCCTTAGG
CTAGAGGATCAGTTTGCATTTGTCAATGGTGTCTCAGACTAAAATGAAGG
TTACAGGTTAGAGGGTTAAATATGTAGATAGAAGCAGAATTTGAGACTTT
TGATGGCATCTGTGCAAGACAATTGGTGTACCACTGGAACAGCAATCCAT
GGAGACAGAGAAGGCCAGTATCAAGAGTCCCCTGATGTTACTGAAGCTTC
AGA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTAATGTCATTAGAGGAGTTGGG
AGATGGTGCTGTGAGTAAGAGTGCTAATACAACCATGAGGAAGTGAGTTT
GAGTCTCTAGCAGCCAAATAAAAAGCTAGACATGGCAGTGCACATCCCAT
TTGACCAAGTGCTAGGAAAATGTAGAGCTAGGAGCATTACTCAAGCTTGC
TGGGTAATGAGAGAGTAGATGATGAGATGGGATGCCTGGCATCCTTCTTT
GGCCTACACACACACACGAGTAGGCACATGCCTCTGCGTGCGCGCACACA
CACACTCACTCATTCACACACATACACAAAGATAAACACACATACATTCA
CACACATGCACACACACATATACTCAGTCACATACACATACAAGCACACA
CTCACACACACATACACTCACTCACTCACATACACACACACATGCACATA
CACACACACTTATACTCACTCACATACACACACAAGCACACACACTCACA
TGTACACATACACTCACACACACACATACACTCACATACATACACACACA
CACCTGCATGTGTGTGTAGCAGAATCAGACATGCATACGCACAAATACAC
AAAGAGTCACTGATATTCCTTGAAATGTCTATATGTTCTGAAACATAGAC
GACA

Query= MSMg01no047_j08.b1 MSMg01no047_j08.b1 CHROMAT_FILE:
MSMg01no047_j08.b1 PHD_FILE: MSMg01no047_j08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:57 2005
         (583 letters)



>mm_chr8_115261734_115262716
          Length = 983

 Score = 1044 bits (540), Expect = 0.0
 Identities = 567/576 (98%), Gaps = 1/576 (0%)
 Strand = Plus / Plus

                                                                       
Query: 9   tcatcaaatgcaaagtaatgtagcttgtgagatgctgtagcatataaatgtgaggaacaa 68
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 208 tcatcaaatgcaaagtaatgtagcttgtaagatgctgtagcatataaatgtgaggaacaa 267

                                                                       
Query: 69  agattgaggttaataaaaggagttgataacagtacattttgaaattaagatatattttct 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 268 agattgaggttaataaaaggagttgataacagtacattttgaaattaagatgtattttct 327

                                                                       
Query: 129 catagcaagcttggaggagattccagatagaaaatgtgattctattcggtctgatgtaga 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 catagcaagcttggaggagattccagatagaaaatgtgattctattcggtctgatgtaga 387

                                                                       
Query: 189 aaagagggttgatgggtcatggaataactgattttattccataaaaaagcgattctgttc 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 aaagagggttgatgggtcatggaataactgattttattccataaaaaagcgattctgttc 447

                                                                       
Query: 249 agtcaaataaaggacagagtgtggatggatcatgggataattagctttaatttgcaactt 308
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 448 agtcaaataaaggacagagtgtgggtggatcatgggataattagctttaatttgcaactt 507

                                                                       
Query: 309 gatacaacctgggattatctgggaaaagggtttcaatgaagaggttgtccatgttgggtt 368
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 508 gatacaacctgggattatctgggaaaagggtttcaatgaagaggttggccatgttgggtt 567

                                                                       
Query: 369 ggtagaca-tgtctaaagggagactgttttaattatgccagttgatatgggaggtgccag 427
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ggtagacaatgtctaaagggagactgttttaattatgccagttgatatgggaggtgccag 627

                                                                       
Query: 428 ccccctgtgggaggcaccattccttaggctagaggatcagtttgcatttgtcaatggtgt 487
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ccccctgtgggaagcaccattccttaggctagaggatcagtttgcatttgtcaatggtgt 687

                                                                       
Query: 488 ctcagactaaaatgaaggttacaggttagagggttaaatatgtagatagaagcagaattt 547
           ||  |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 688 cttggactaaaatgaaggttacaggttagagggttaaatacgtagatagaagcagaattt 747

                                               
Query: 548 gagacttttgatggcatctgtgcaagacaattggtg 583
           ||||||||||||||||||||||||||||||||||||
Sbjct: 748 gagacttttgatggcatctgtgcaagacaattggtg 783


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space:   557529
Effective search space used:   557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)