Query= MSMg01no048_c12.b1 MSMg01no048_c12.b1 CHROMAT_FILE:
MSMg01no048_c12.b1 PHD_FILE: MSMg01no048_c12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:47 2005
(613 letters)
>mm_chr8_46250479_46251500
Length = 1022
Score = 1089 bits (563), Expect = 0.0
Identities = 605/623 (97%), Gaps = 10/623 (1%)
Strand = Plus / Plus
Query: 1 atcattcacagataggctgacaggtccggatcatgaggaacagtccagcccggcaggcag 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 200 atcattcacagataggctgacaggtccggatcatgaggaacagtccagcctggcaggcag 259
Query: 61 cccatacatgcagcctcactgcgcatgctcgggca-ggcagtaaacaagtgggtttcacg 119
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 260 cccatacatgcagcctcactgcgcatgctcgggcaaggcagtaaacaagtgggtttcacg 319
Query: 120 tggcctgtggccgcacccgcttcctgcagttgggagacagagaacagacagacagacaga 179
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 320 tggcctgtggccgcacccgcttcctgcagttgggagacagagagcagacagacagacaga 379
Query: 180 tagagacagagacagacagatatatggatatcacacattaattagatatgaaaagtcta- 238
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tagagacagagacagacagatatatggatatcacacattaattagatatgaaaagtctac 439
Query: 239 -tata--catcatacattagttagagtacagatgaagactttgtgtaggtcctgaaaata 295
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atatagacatcacacattagttagagtacagatgaagactttgtgtaggtcctgaaaata 499
Query: 296 tgtcagagagtgatagtgtttgtctgagaatgataatggtgtgagcccagggttgggtga 355
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 500 tgtcagagagtgatagtgtttgtctgagaatgagaatggtgtgagcccagggttgggtga 559
Query: 356 cagatgcccaggaatagacagaggctgggtataaaaccagcaaggcactgct-----gtt 410
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 560 cagatgcccaggaatagacagaggctgggtataaaaccagcaaggcactgctaaggagtt 619
Query: 411 tcaatattgctcttagtgcaaccccaggaagaatttgagcaggaggataagacacctaaa 470
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 620 tcaatattgctcttagtgcaaccccaggaagaatttgagcaggaggataagacagctaaa 679
Query: 471 tgtgagttagagatctacaattctgtgctatatatgaacaaaacaatgcaaatgagctca 530
|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 680 tgtgagttagagatatacaattctgtgctatatatgaacaaaacaatggaaatgagctca 739
Query: 531 ttaaattgacattttatagctgagtagtctatctatgtttttcaataactgatatatacc 590
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 740 ttaaattgacattttatagctgagtagtctacctatgtttttcaataactgatatatacc 799
Query: 591 aaaaacagaacaattttctccaa 613
|||||||||||||||||||||||
Sbjct: 800 aaaaacagaacaattttctccaa 822
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1022
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1012
Effective search space: 610236
Effective search space used: 610236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no048_c12.g1 MSMg01no048_c12.g1 CHROMAT_FILE:
MSMg01no048_c12.g1 PHD_FILE: MSMg01no048_c12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:47 2005
(455 letters)
>mm_chr8_46406856_46407715
Length = 860
Score = 820 bits (424), Expect = 0.0
Identities = 449/460 (97%), Gaps = 5/460 (1%)
Strand = Plus / Minus
Query: 1 ttccattttccttggctccattttgtccccaggctcgagtcacaacttacccatgttcaa 60
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 515 ttccattttccttggctccattttgtccccaggcttgagtcacaacttatttatgttcaa 456
Query: 61 aactcttgagtaaatttctctgaggcataagacttaatgaaccacagagaaaaacaaatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 aactcttgagtaaatttctctgaggcataagacttaatgaaccacagagaaaaacaaatg 396
Query: 121 ctgataaatattgatctgaaaagcagacaatgctctaggtctgatcctctaatgttttga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ctgataaatattgatctgaaaagcagacaatgctctaggtctgatcctctaatgttttga 336
Query: 181 tgtctaaattcctc-----tttttttgtttaataattctcttcttaaggtgattttgacc 235
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtctaaattcctctcttttttttttgtttaataattctcttcttaaggtgattttgacc 276
Query: 236 agttctaagcaaattgataaatcgtttttgtacaagttcctacagccatggctgggacta 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 agttctaagcaaattgataaatcgtttttgtacaagttcctacagccatggctgggacta 216
Query: 296 ggacttcttacaaggtgagtgaatgaacaaaagatatccaaagaaaggcatgttattgcc 355
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 215 ggacttcttacaaggtgagtgaatgaacaaaagagatccaaagaaaggcatgttattgcc 156
Query: 356 cctaagcatggtgcatgagaaagtttattgtagagaaaagggagagtgtagtgcgagagg 415
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 155 cctaagcatggtgcatgagaaagtttattgtagagaaaagggagagtgtagtgggagagg 96
Query: 416 cagagatatctcagagagtccagggttcacatgctcctaa 455
||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 cagagatatctcagagagtccagggttcacatgctcctaa 56
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 860
Length adjustment: 10
Effective length of query: 445
Effective length of database: 850
Effective search space: 378250
Effective search space used: 378250
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
