BAC Information

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BAC

Clone NameMSMg01-048L08
Chromosome8 (Build37)
Map Location 32,975,325 - 33,142,201
singlet/doubletdoublet
Overlap geneNrg1
Upstream geneLOC547008, Dusp26, Rnf122, BC019943, Rbm13, Fut10, LOC666330, LOC666568, 7420700N18Rik, LOC100041329, EG330731, LOC100041340
Downstream gene2010007E15Rik, EG666589, EG546052, LOC100042715, LOC628408
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-048L08.T7 (MSMg01no048_l08.b1)MSMg01-048L08.TJ (MSMg01no048_l08.g1)
ACCAG278408AG278409
length1,2411,266
length of high quality
(start - end)
635 (77 - 711)646 (124 - 769)
definitionCHROMAT_FILE: MSMg01no048_l08.b1 PHD_FILE: MSMg01no048_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:09:57 2005CHROMAT_FILE: MSMg01no048_l08.g1 PHD_FILE: MSMg01no048_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:09:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,975,325 - 32,975,959)(33,141,556 - 33,142,201)
sequence
NCCTATGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATTCCTC
CAAGGCAGTTCACGCTTAAAATCACCATGTATCCATTAATGGATTCTGGC
TCACGATAGTTATTTCATAACCACATCCATGACCTTGTAGTAAAAACAAG
CAAATGACAGAAAAAGCGGAGCTCTTTTTCCTCCCCCACGTCTATGTAGA
TCATGTTCTTCCATCTCAGCCAGGGATTTATAGTTAACATCTCCTTGGTT
TCTAAACCATATTTTCGGAGAACGAGACTTAAAGTCTATTACTTCTAGGT
TTCACACTCTGAATAGAAAGCAGGAGGCTAAATGTCTGTCAAATCCATAC
TAGTTCAGTCTTGACTCCGAGAAACTGCTTGGATCCCATTATGGATCACT
CTGCTCTTGCAGAATAGAACACTCAAGCTTTCTGTTCAGCTTTCTTTAAC
TGATCCTGAGTAGCCGAGTTTAAATTAGGAAAGGGACTGACCAGCTGGAA
TGTTATAATGGATTCTATTCGCCCTCCAATCAAATTATCCTCATCTTCCT
TTTAAAAACGCTTTTAAGAAAATTCAATTTTCATTTAGTGACCATTTCAA
GGGTAGAAAAATATTACCCCTATTATTCCTTTACGAATCCTCAGTTACAG
AAATGCGCGTACCTGTAAGTATATGGACAAATATAAATATGCTGAGCTAT
AGGCACTGCGGTCACTCAGGACGTCAGGAACTGTACGAAATGAAGTGCTA
AATTTAGTTACGATGTCTGTGCAGTATTTAATATTCGCATAAGATGTGAC
TGACCTCCACGTAAAATTAATATTACTAGTTCCCTCCAGAAGTTGCCGGT
ACACATCAGAATCTGAAGGAAATAAGGTCTAAGATAAATTCTGCATTCCT
TGCATAGTGAATTTATAGATTATATCATATGACATTTTATTCTATGAATT
TTTGGATATATAAAGTTTCCTTTTTTTGGCTAAATATTATTCTTTTCTCC
AAAAATACTTTTTATTTACCCTAATATTTTTGTTATTTTTTCCCTTTTTA
AAAAGGTTATCTCTGATGTTCCTTCTTTCTCTGTCTCTTTTGTTCTTATT
TCCACTCTTTTTTCTCGTCTTTTTTTTTCCCATTCCTTCTTATTTATATT
CTTTTCTTTCTTCTCTTTTTCTACTTTTTTACTTTATTTATTTTCTATCT
TCTTTTCTCTTCCTTCTATTCCCTTTCTCACTATCTTCTCA
TTTTCAGGATGGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTTTTAATGCTCTGATGTCCTAAGATCTTCAGTA
CTGTGGTGATTGTTGGCCAGACGCCCCCCTCATGCCCTGGCTACATGACC
GTCTCACTTAGCATCTTGTTTAATCGAAGAAGCAATGGAGAAAAATCTGC
TAACAAAATGAAAGGCACTCTATGACATAAGCCCTGCAATGACATCTCAT
CCCTTTGCCTCGTCCTATGTATTACAAAGCAATTGGCTAGGCAAGACGAC
ACACAAGATAAGGATCTTCCACGAGGGACAAATACTAGGAGGCAGGCTGT
GGGCTGAAGTGCAATGTAGTGGCTCAGAGTCATAGGTAATGAACACATGT
GCACAGCTTTCTATAGTTAGCTGGCGTCTCCACTGTCTCACATCAAATCT
TTACCCCCTTTGCTCCAGTAATGATGGAGGTCAGTCAAGATGCCCTTCAT
CCACAAGCTAATGACGTCTCCCAAGGTTTTGCCATATTCAAATAACACAA
GCAATTGGCATCTGTTTCCCCCCTAGATGGGCCTGTGTCCCCTCCACATT
TTGTGCCTGTTCGGCTCACAACACCCTTTGGTGCTTCTTTCTTTCCCTCA
TGTTAGAAGGCTACCTGGTCAAGGGTTGCCCCTACCCCACATTTGATCCT
TTCCTGTTCTGTATCTACTCCACTTTAGAAATCAAAGCTTAATCTGTACT
TGCTCCGCACTGGACAGTTTATGATTTTTAAAAATTTCTTCTTTTGAAAA
CTCTCGGTTTGTGTCTACTCCTTTTTGTTTTTGATTTGTTTAAGTTGTTT
GCTTGTGTTCTTTGCTGACCTGCTTTCCAAGTGTTCTGAGCATCTCTCTA
TTCCACCCCTCTGTTTAATGGATAGTTTGTATAGATTTCTTTCCCATTTT
CATAAGCTGCCTCTTCACTCTAATTAATGGATTCTTTTCTCCTACTAAAC
TTTTTTTTCTTTACAAAACATCCTTTTTCCTATTGCCTGGTCTTTTTTCC
TAAAATCCCCGAATCTTTTTTTTAAAATATCTATATTATGTATATACATT
TTTTCCATTTAACTTGCAATCTATCTTCCTCCTAGATTCTTAAACTCTCT
TATTATACTCATATTCTCAACTTTTCTATACTCCTCTCATTACCTCTTTT
TTTTACCTTTCTATTCTCTCCTCTTCATATCCTTACTTATTTACATTTTT
CTCTCTTTTTATCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no048_l08.b1 MSMg01no048_l08.b1 CHROMAT_FILE:
MSMg01no048_l08.b1 PHD_FILE: MSMg01no048_l08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:09:57 2005
         (635 letters)



>mm_chr8_32975125_32976159
          Length = 1035

 Score = 1212 bits (627), Expect = 0.0
 Identities = 633/635 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtatccattaatggattctggctcacgatagttatttcataaccacatccatgacctt 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 atgtatccattaatggattctggctcacgatagttatttcataactacatccatgacctt 260

                                                                       
Query: 61  gtagtaaaaacaagcaaatgacagaaaaagcggagctctttttcctcccccacgtctatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtagtaaaaacaagcaaatgacagaaaaagcggagctctttttcctcccccacgtctatg 320

                                                                       
Query: 121 tagatcatgttcttccatctcagccagggatttatagttaacatctccttggtttctaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagatcatgttcttccatctcagccagggatttatagttaacatctccttggtttctaaa 380

                                                                       
Query: 181 ccatattttcggagaacgagacttaaagtctattacttctaggtttcacactctgaatag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccatattttcggagaacgagacttaaagtctattacttctaggtttcacactctgaatag 440

                                                                       
Query: 241 aaagcaggaggctaaatgtctgtcaaatccatactagttcagtcttgactccgagaaact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagcaggaggctaaatgtctgtcaaatccatactagttcagtcttgactccgagaaact 500

                                                                       
Query: 301 gcttggatcccattatggatcactctgctcttgcagaatagaacactcaagctttctgtt 360
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcttggatcccattatggaccactctgctcttgcagaatagaacactcaagctttctgtt 560

                                                                       
Query: 361 cagctttctttaactgatcctgagtagccgagtttaaattaggaaagggactgaccagct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagctttctttaactgatcctgagtagccgagtttaaattaggaaagggactgaccagct 620

                                                                       
Query: 421 ggaatgttataatggattctattcgccctccaatcaaattatcctcatcttccttttaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggaatgttataatggattctattcgccctccaatcaaattatcctcatcttccttttaaa 680

                                                                       
Query: 481 aacgcttttaagaaaattcaattttcatttagtgaccatttcaagggtagaaaaatatta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aacgcttttaagaaaattcaattttcatttagtgaccatttcaagggtagaaaaatatta 740

                                                                       
Query: 541 cccctattattcctttacgaatcctcagttacagaaatgcgcgtacctgtaagtatatgg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cccctattattcctttacgaatcctcagttacagaaatgcgcgtacctgtaagtatatgg 800

                                              
Query: 601 acaaatataaatatgctgagctataggcactgcgg 635
           |||||||||||||||||||||||||||||||||||
Sbjct: 801 acaaatataaatatgctgagctataggcactgcgg 835


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space:   640625
Effective search space used:   640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no048_l08.g1 MSMg01no048_l08.g1 CHROMAT_FILE:
MSMg01no048_l08.g1 PHD_FILE: MSMg01no048_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:09:57 2005
         (646 letters)



>mm_chr8_33141356_33142401
          Length = 1046

 Score = 1241 bits (642), Expect = 0.0
 Identities = 645/646 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cccccctcatgccctggctacatgaccgtctcacttagcatcttgtttaatcgaagaagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 cccccctcatgccctggctacatgaccgtctcacttagcatcttgtttaatcgaagaagc 787

                                                                       
Query: 61  aatggagaaaaatctgctaacaaaatgaaaggcactctatgacataagccctgcaatgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 aatggagaaaaatctgctaacaaaatgaaaggcactctatgacataagccctgcaatgac 727

                                                                       
Query: 121 atctcatccctttgcctcgtcctatgtattacaaagcaattggctaggcaagacgacaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 atctcatccctttgcctcgtcctatgtattacaaagcaattggctaggcaagacgacaca 667

                                                                       
Query: 181 caagataaggatcttccacgagggacaaatactaggaggcaggctgtgggctgaagtgca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 caagataaggatcttccacgagggacaaatactaggaggcaggctgtgggctgaagtgca 607

                                                                       
Query: 241 atgtagtggctcagagtcataggtaatgaacacatgtgcacagctttctatagttagctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 atgtagtggctcagagtcataggtaatgaacacatgtgcacagctttctatagttagctg 547

                                                                       
Query: 301 gcgtctccactgtctcacatcaaatctttaccccctttgctccagtaatgatggaggtca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gcgtctccactgtctcacatcaaatctttaccccctttgctccagtaatgatggaggtca 487

                                                                       
Query: 361 gtcaagatgcccttcatccacaagctaatgacgtctcccaaggttttgccatattcaaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gtcaagatgcccttcatccacaagctaatgacgtctcccaaggttttgccatattcaaat 427

                                                                       
Query: 421 aacacaagcaattggcatctgtttcccccctagatgggcctgtgtcccctccacattttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 aacacaagcaattggcatctgtttcccccctagatgggcctgtgtcccctccacattttg 367

                                                                       
Query: 481 tgcctgttcggctcacaacaccctttggtgcttctttctttccctcatgttagaaggcta 540
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tgcctgttcggctcacaaaaccctttggtgcttctttctttccctcatgttagaaggcta 307

                                                                       
Query: 541 cctggtcaagggttgcccctaccccacatttgatcctttcctgttctgtatctactccac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 cctggtcaagggttgcccctaccccacatttgatcctttcctgttctgtatctactccac 247

                                                         
Query: 601 tttagaaatcaaagcttaatctgtacttgctccgcactggacagtt 646
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttagaaatcaaagcttaatctgtacttgctccgcactggacagtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space:   658896
Effective search space used:   658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)