Query= MSMg01no048_m02.b1 MSMg01no048_m02.b1 CHROMAT_FILE:
MSMg01no048_m02.b1 PHD_FILE: MSMg01no048_m02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:03 2005
(285 letters)
>mm_chr8_25660307_25660991
Length = 685
Score = 513 bits (265), Expect = e-150
Identities = 277/281 (98%)
Strand = Plus / Minus
Query: 1 tttattgacctttcgacaaacaaccaatccatggaaacttcattttcacagttgaatctg 60
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tttattgacttttcaacaaacaaccaatccatggaaacttcattttcacagttgaatctg 422
Query: 61 tctcaggcggtcgacgcaaggcagcatttacttttgttataaattaaaacagcaaacaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tctcaggcggtcgacgcaaggcagcatttacttttgttataaattaaaacagcaaacaag 362
Query: 121 aagtcgaggctggacataaagggacctttcttggcatgctggttgtaggtagccatgcag 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aagtccaggctggacataaagggacctttcttggcatgctggttgtaggtagccatgcag 302
Query: 181 tgctgaaagagatggttgagatctgctgtgtaccctttcaagagacccttccttttaaga 240
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 301 tgctgaaagagatggttgagatctgctgtggaccctttcaagagacccttccttttaaga 242
Query: 241 actggggagggctcctcttatctacagtctgctgagcctta 281
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 actggggagggctcctcttatctacagtctgctgagcctta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space: 186576
Effective search space used: 186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no048_m02.g1 MSMg01no048_m02.g1 CHROMAT_FILE:
MSMg01no048_m02.g1 PHD_FILE: MSMg01no048_m02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:03 2005
(599 letters)
>mm_chr8_25509494_25510492
Length = 999
Score = 1046 bits (541), Expect = 0.0
Identities = 583/597 (97%), Gaps = 2/597 (0%)
Strand = Plus / Plus
Query: 1 cctggggaatggagagtcccgagtcctacaatcacccatagaagatctatcacgaaagat 60
|||||||||||||||||||||||||||||||||| | |||||||||||| | |||||||
Sbjct: 201 cctggggaatggagagtcccgagtcctacaatcaaacgtagaagatctattatgaaagat 260
Query: 61 cagttttaagagcaagaggaacaacctctttaggtttttttgttccagaagcatctcaaa 120
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 261 cagttttaagagcaagaggaacagcctctttagttttttttgttccagaagcatctcaaa 320
Query: 121 acagaaaggttgcaaga-ggctaaacctaatctttagtggtgttgaccgtgccttctctc 179
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acagaaaggttgca-gaaggctaaacctaatctttagtggtgttgaccgtgccttctctc 379
Query: 180 gccacagcacaccacggcaaagacccctgaggcagctgcccttccctctattcccataac 239
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 380 gccacagcacaccgtggcaaagacccctggggcagctgcccttccctctattcccataac 439
Query: 240 acccagtaaacgacaaatgaaagcatgaagacctttccccattatgacacaagcaaaatt 299
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 440 acccagtaaacgacaaatgaaagcatgaagacctttccccattatgacacgagcaaaatt 499
Query: 300 ggccagatcccagaggattggcatctgttttggcttctgaattctccttctgctggaatg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ggccagatcccagaggattggcatctgttttggcttctgaattctccttctgctggaatg 559
Query: 360 cagaaattaccccagggtgattcagtcctgtctcaccagcccttgagatgacatggcaac 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tagaaattaccccagggtgattcagtcctgtctcaccagcccttgagatgacatggcaac 619
Query: 420 agacgtcacagcatggctctggaaatcactcttacccctggctatgttttgcaagccccc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 agacgtcacagcatggctctggaaatcactcttacccctggctatgttttgcaagccccc 679
Query: 480 aacacagctgacaaatctcagagcagtacctcctcctgcatccttagagacacagtctca 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aacacagctgacaaatctcagagcagtacctcctcctgcatccttagagacacagtctca 739
Query: 540 gagctcagtgaactgtagagtggtgtttctcaacctgagagtcatgatccctttgtg 596
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gagctcagtgaactgtagagtggtgtttctcaacctgagagtcatgatccctttgtg 796
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space: 582521
Effective search space used: 582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
