Query= MSMg01no049_a22.b1 MSMg01no049_a22.b1 CHROMAT_FILE:
MSMg01no049_a22.b1 PHD_FILE: MSMg01no049_a22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:39 2005
(618 letters)
>mm_chr8_101713767_101714783
Length = 1017
Score = 1033 bits (534), Expect = 0.0
Identities = 568/588 (96%), Gaps = 14/588 (2%)
Strand = Plus / Minus
Query: 1 tggactttgagaccaaaaaatcctatactctgaccgtggaagcagccaatatccacatcg 60
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 588 tggactttgagaccaaaaaatcctatactctgaaggtggaagcagccaatatccacatcg 529
Query: 61 acccacgtttcagtagcaggggaccctttaaggatacagcaacagtcaaaattgtcgtag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 acccacgtttcagtagcaggggaccctttaaggatacagcaacagtcaaaattgtcgtag 469
Query: 121 aggatgctgatgagcctccggtcttctcttcaccaacttacctccttgaagttcatgaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 aggatgctgatgagcctccggtcttctcttcaccaacttacctccttgaagttcatgaaa 409
Query: 181 atgctgctttgaactctgtgattggccaagtgacagctcgtgaccctgatatcacttcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 atgctgctttgaactctgtgattggccaagtgacagctcgtgaccctgatatcacttcca 349
Query: 241 gtccaataaggtattttgtttctaactgttgtacacggtgcttcattggacaagagaagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 gtccaataaggtattttgtttctaactgttgtacacggtgcttcattggacaagagaagg 289
Query: 301 agccctgggactgtgcccctgtgatgaaggactttacattatttatctcccccccctctc 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 288 agccctgggactgtgcccctgtgatgaaggactttacattatttatctcccccccccctc 229
Query: 361 tctctctgtgtgtgtgtgtgtgtg--------------ctgtgcatccacagtctactaa 406
||| | |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 228 tctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctgtgcatccacagtctactaa 169
Query: 407 gtcacaaagaatggctaggaataggaatatcaaaataagtcaagtttttccagctcttgg 466
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 gtcacaaacaatggctaggaataggaatatcaaaataagtcaagtttttccagctcttgg 109
Query: 467 aaagcttgaaggggatgaaaaattacaaatgttttgtagcactttgggaagaatctttta 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 aaagcttgaaggggatgaaaaattacaaatgttttgtagcactttgggaagaatctttta 49
Query: 527 catttcatgctttatatagtttatatttttagtattgcatgagcaagg 574
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48 catttcatgctttatatagtttatatttttagtattgcatgagcaagg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1017
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1007
Effective search space: 612256
Effective search space used: 612256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no049_a22.g1 MSMg01no049_a22.g1 CHROMAT_FILE:
MSMg01no049_a22.g1 PHD_FILE: MSMg01no049_a22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:39 2005
(471 letters)
>mm_chr8_101648561_101649431
Length = 871
Score = 861 bits (445), Expect = 0.0
Identities = 463/469 (98%), Gaps = 2/469 (0%)
Strand = Plus / Plus
Query: 1 gatcaggacggcattggactcagaaatcttcctgcctcttcctcccaagtgctgggatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gatcaggacggcattggactcagaaatcttcctgcctcttcctcccaagtgctgggatta 260
Query: 61 aaaggcatgtgccaccactgcctggcaaaattgattttcttattgatcactttgtttcta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 aaaggcatgtgccaccactgcctggcaaaattgattttcttattgatcactttttttcta 320
Query: 121 ataatacttaattgtgcacatgggaaaaatccatgttaggtaaatacaacatctacagta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataatacttaattgtgcacatgggaaaaatccatgttaggtaaatacaacatctacagta 380
Query: 181 ttgttccatctcagtgagttttgtcatttgttgttatgaaacttttccttgaattacagt 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgttccatctcagtgtgttttgtcatttgttgttatgaaacttttccttgaattacagt 440
Query: 241 aatatttctcctctgttgactcttgaccttttttgtttgtttgtttgtttgtttgtctga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatatttctcctctgttgactcttgaccttttttgtttgtttgtttgtttgtttgtctga 500
Query: 301 attggtatacgtcttgtattccttttaacctttatgtgtacctattatttaacatccata 360
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 attggtatacgtcttgtattccttttaacctttatgtgtacctattacttaacatccata 560
Query: 361 tatgaatagaaatgaggcttacatattgccttctttataaaatctgccctgataattggt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatgaatagaaatgaggcttacatattgccttctttataaaatctgccctgataattggt 620
Query: 421 ctagtagacgaatttatagcagtctatttatacg-aatgtgaaagtttt 468
|||||||||||||||||||||||||||||||| | |||||||| |||||
Sbjct: 621 ctagtagacgaatttatagcagtctatttata-gcaatgtgaaggtttt 668
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space: 396921
Effective search space used: 396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
