BAC Information

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BAC

Clone NameMSMg01-049G11
Chromosome8 (Build37)
Map Location 101,429,175 - 101,429,744
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041173, EG636915
Downstream geneCdh8, A330008L17Rik, LOC667531
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-049G11.T7 (MSMg01no049_g11.b1)MSMg01-049G11.TJ (MSMg01no049_g11.g1)
ACCAG278871AG278872
length1,1921,272
length of high quality
(start - end)		570 (85 - 654)702 (80 - 781)
definitionCHROMAT_FILE: MSMg01no049_g11.b1 PHD_FILE: MSMg01no049_g11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:11:23 2005CHROMAT_FILE: MSMg01no049_g11.g1 PHD_FILE: MSMg01no049_g11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:11:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCTCTTNNNNNNGCATTGGGCGCTATAGACTCCTATAGGGAGAGGATCC
GCGGAATTCTAGTCAGCTTCTGTAAGACGTTAGCCTTGATTTTCAACCTG
TCATAAGACAAAACCATACCACTAACCTATTTCAGGTGTGCAGAGAACCA
TTAAAGTAAGAATATTCGGTCTAAGTATGTTGAAAGTTTTAAATGGGAGA
TTTCAAGATTATACAACATTGTCCTGTGTTGTGGATTTTTGAAAACCATC
TATACGTGCTAGCTGCATTCCTTGACTTCAGTTCCAATTGAAAACTTCAG
AGACATCTGCAAGTTTTTATAGGAGCAAAATGCATTCTTAAGAGTTAAGA
TCCACTGCTATTGAGATGTTTTTCACATTTTATATATTATATATTTTAAT
TCAACCAAAAATTATATCTGTATATACATACATATATATATTACATTTAT
GTTACAGATAACATTAGCCATTCTTATATAATAAATGTAACCCTATCAAA
TTTTTAGTTCTAGCTTTCATTATTGGTAATAATGATTTCAAAGTAAAGCA
TGGGTAGTGGACATCATGATCTTATGTGGTGGCATAACCATCATGAACAA
GAGAAATGGCTTAGTCTATAGCCACTCACAGTGAAAGCATAGATAGAAAT
GTTCXXXXXXXXXXXXXXXXXXXXGTCAGAATTTCTATTAGTTTCTTTTT
ATTGTTATCATAAAATGACACTATCAAAGAAACCGATGATAGAACGAGCT
TATTTGTGTTTATGGATCCAGAGGCAGAGTGTATAAGACCAGAGGAGGCA
ACAACTAAGGGATCCTAGCAGGAAACTTCAACTTTTCATTCCTCAGGTGC
AAAACAAAAACAGGGCACACTTGTATTGGAGGGCTCCATTAAACTCCTTG
CTGCAAAAAAGTTACCCATTCCCTTTTGTAACCAATATTTTTGCTTATAA
CTTCTACAACTCCTAAAATAAATCTATTTCTAGCTGTTTGAACTATCCCC
CCATTTATATTTATGGTTAATGGGGAAAAAATTTTTTAATTTTATATTTA
TTATATNTTAAAATTATTTTTAATATGGGGGTGATAAAATATTGGTAAAT
TTTATTATATAAAAATATTTTTGTTTTTAAATGATTNTTAGTAAATAAAT
TGGTTTAAATANATTGTATTAAATTAAGATTTGTTATTATAT

NCCCTAGTCNTTTTTTAAGCATGGAGGCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTTGAACAACAGGCTCCC
AGATAACAATTAAATATGACCCTTCTATTAAAATTGAAAGTCTATTGAAA
TCTACAGACTGGGGAAAAAAACCTTCACTAACTCCACATAAAATACAGGG
ATAACATCCAAAATATATAAAGAACACAAGAAGCTAACTTCCAAAAAACC
AAATAACCCAATCAAAAAATGGGGTATAGACATAAACAGAGAATTCACAA
CAGAGGAATCTTAAATGGCCAAGAAACACTTTAAAATGCTCAAAGTCACC
CAAGATATAAGATACAATTTGCTAAACACATGAAACTCAAGAAGAACGAA
GACCAAATTGTGGACACTTTGCCCCTTCTTAGAATTTGGAACAAAACACC
CATCGAAGGAGTTACAGAGACACAGTTTGGAGCTGAGACAAAAGGATGGA
CCACCTAGAGACTGCCATATCCGGGGATCCATTCCATAATCAGCTTCCAA
ATGCTTACACCATTGCATACACTAGAGAGATTTTGCTGAAAGGACCCAGA
TATAGCTGTCTCTTGTGAGACTATGCCGGGACCTAGCAAACACAGAAGGT
GATGCTCACAGTCAGCTATTGGATGGATCACAGAGCCCCCAATGGAGGAA
CTAGAGAAAGTAACCACCGAGCTAAAGGGATCTGCAACCCTATAGGTGGA
ACAACAATATGAACTAACCAGTACCCCACCAGAGCTCGCGTCTCTAGCTG
CATATGTATCAGAAGATGGCCTAGTCGGCCATCACTGGCAAGAGAGGCCC
ATTGGTCGTGCAAACTTTATCTGTCTCAGTACAGGGGAACGCCAGGGCCA
AAAATTGTGAATGCGTGGTTGGATAAACGTGTGCTTTGCTCTTCTTAAAT
ATTTGGATTTGGTATGGATATACATTCCTAATTTAACAGATTAAGTAATT
CATATTTTTTATTCATTTAATTTAATAAATTTAATATTATAATATTCCTA
AGATCTAATAAATTAGAAAATTGCATATTAATTGGTCACGAATTTTCTCT
TTAACTAATCAAAAATTTCTTATATCTCTTCTTCCTCTTTTCCTTCCTTC
TTTTCACCCTTCTTTTTAAATTAGTAACCTTTTATCTACACTACTGGAAT
ATACTAATTATAATTCACTACATTCAGATATTATTTATTGTGTTTCTCTC
CTAATTATTTTATATTAATCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no049_g11.b1 MSMg01no049_g11.b1 CHROMAT_FILE:
MSMg01no049_g11.b1 PHD_FILE: MSMg01no049_g11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:23 2005
         (570 letters)



>mm_chr8_101428975_101429944
          Length = 970

 Score = 1079 bits (558), Expect = 0.0
 Identities = 567/570 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttgattttcaacctgtcataagacaaaaccataccactaacctatttcaggtgtgcaga 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 cttgattttcaacctgtcataagacaaaaccatacaactaacctatttcaggtgtgcaga 260

                                                                       
Query: 61  gaaccattaaagtaagaatattcggtctaagtatgttgaaagttttaaatgggagatttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaccattaaagtaagaatattcggtctaagtatgttgaaagttttaaatgggagatttc 320

                                                                       
Query: 121 aagattatacaacattgtcctgtgttgtggatttttgaaaaccatctatacgtgctagct 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 aagattatacaacattgtcctgtgttgtggatttttgaaaaccatttatacgtgctagct 380

                                                                       
Query: 181 gcattccttgacttcagttccaattgaaaacttcagagacatctgcaagtttttatagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcattccttgacttcagttccaattgaaaacttcagagacatctgcaagtttttatagga 440

                                                                       
Query: 241 gcaaaatgcattcttaagagttaagatccactgctattgagatgtttttcacattttata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcaaaatgcattcttaagagttaagatccactgctattgagatgtttttcacattttata 500

                                                                       
Query: 301 tattatatattttaattcaaccaaaaattatatctgtatatacatacatatatatattac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tattatatattttaattcaaccaaaaattatatctgtatatacatacatatatatattac 560

                                                                       
Query: 361 atttatgttacagataacattagccattcttatataataaatgtaaccctatcaaatttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atttatgttacagataacattagccattcttatataataaatgtaaccctatcaaatttt 620

                                                                       
Query: 421 tagttctagctttcattattggtaataatgatttcaaagtaaagcatgggtagtggacat 480
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tagttctagttttcattattggtaataatgatttcaaagtaaagcatgggtagtggacat 680

                                                                       
Query: 481 catgatcttatgtggtggcataaccatcatgaacaagagaaatggcttagtctatagcca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 catgatcttatgtggtggcataaccatcatgaacaagagaaatggcttagtctatagcca 740

                                         
Query: 541 ctcacagtgaaagcatagatagaaatgttc 570
           ||||||||||||||||||||||||||||||
Sbjct: 741 ctcacagtgaaagcatagatagaaatgttc 770


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space:   537600
Effective search space used:   537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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